© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|2110 |
| Gene name | |
| Location | scaffold_186:10239..12213 |
| Strand | - |
| Gene length (bp) | 1974 |
| Transcript length (bp) | 1695 |
| Coding sequence length (bp) | 1692 |
| Protein length (aa) | 564 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04820 | Trp_halogenase | Tryptophan halogenase | 4.6E-12 | 9 | 65 |
| PF04820 | Trp_halogenase | Tryptophan halogenase | 2.8E-11 | 154 | 366 |
| PF01494 | FAD_binding_3 | FAD binding domain | 4.7E-11 | 7 | 369 |
| PF13450 | NAD_binding_8 | NAD(P)-binding Rossmann-like domain | 1.2E-04 | 11 | 38 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q0VZ69|THAL_CHOCO | Tryptophan 2-halogenase OS=Chondromyces crocatus GN=cmdE PE=4 SV=1 | 1 | 387 | 3.0E-64 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0071949 | FAD binding | Yes |
| GO:0004497 | monooxygenase activity | Yes |
| GO:0036094 | small molecule binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0000166 | nucleotide binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0043167 | ion binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0050660 | flavin adenine dinucleotide binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 26.19 | 13.40 | 38.98 |
| CcL | In ants, during behavior modification | 19.62 | 9.18 | 30.06 |
| CcD | In ants, recently dead | 8.36 | 3.19 | 13.54 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.284152 | no |
| SC16a | CcD | 0.000286 | yes |
| CcL | CcD | 0.002815 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|2110 MAVPKSCTVLIIGAGPAGSYAACCLAREGIDTVVLEADKFPRYHIGESTLPSLRHFFKFIDVDDAFDAYGFFKKG SSRNGAVFRLNQAHPDALTDFIEAGGPDGYAWNLIRAESDDLLFRHAKACGAHTFDETKVDSIQFERGTDRTCFG EGQDKAMDSGRPVSATWSRKDGSAGTIAFKYLIDASGRHGILSTKYLKSRRFNRGFKNVASWAYWKSDNLYGQGT SWEGLPYFEALQDASGWCWYMPLHDGTRSVGIVQDQAMATDKKRKLGKPSTSEFYRQSLELATRTNELLSGATLA SDIKSASDWSYTSSTYHIPYARICGDAGCFIDPLFSSGVHLAIAGGLSAAVTIAASLKGDYDEETAGSWHSKKTV ESYARFLLAVCAATKQIRYEDEPVMHDFDEEGLQRAFDILQPIIQGTVDGEARGRTTDIEVSQVLKFCFRAFNYV PHEKKEALFEKLDRLDPGFGEGDAAKRIEEMHKHLTAEEMEIVEALRSRRLIREDVFTLGSFTLDIIDGLAPRLV RGELGLVKASKARLDSRHFLSAPFLDGKVEAIRTHGEGI |
| Coding | >Ophio5|2110 ATGGCTGTTCCGAAAAGTTGTACAGTTCTGATCATTGGGGCCGGTCCTGCAGGATCATACGCGGCCTGTTGTTTG GCACGTGAGGGCATCGACACGGTTGTGCTCGAGGCAGACAAGTTTCCCCGATATCATATTGGAGAGAGCACGCTT CCTTCGCTGCGGCACTTCTTCAAGTTTATAGACGTTGACGATGCCTTTGATGCTTATGGCTTCTTCAAGAAGGGA AGTAGTCGCAACGGAGCAGTGTTTCGGCTCAATCAAGCTCATCCCGATGCGTTAACCGACTTCATCGAGGCGGGC GGGCCCGACGGTTATGCCTGGAACTTGATCCGGGCCGAATCCGACGACTTGCTCTTCAGGCACGCAAAAGCGTGC GGGGCTCACACCTTTGACGAAACCAAGGTTGACTCGATTCAATTCGAGCGAGGCACAGACAGGACATGCTTCGGT GAGGGTCAGGACAAGGCCATGGATTCAGGCCGGCCCGTATCGGCAACCTGGAGCCGCAAAGACGGCTCGGCCGGA ACCATCGCCTTCAAGTATCTCATTGATGCCAGTGGAAGACACGGAATTCTGAGCACCAAGTACCTAAAGAGCAGG AGGTTTAATCGCGGCTTCAAGAATGTCGCCAGTTGGGCCTATTGGAAGAGCGACAACTTATACGGTCAGGGAACG TCCTGGGAGGGCCTTCCGTATTTTGAGGCGCTGCAAGATGCCAGCGGTTGGTGTTGGTATATGCCGCTTCACGAC GGCACTCGCTCCGTCGGCATCGTCCAGGACCAAGCCATGGCGACGGATAAGAAGCGAAAGCTGGGGAAGCCATCG ACGTCGGAATTTTATAGGCAGTCTCTCGAGCTGGCCACTCGGACTAATGAGTTGCTCTCCGGGGCTACGCTTGCC AGCGATATCAAGTCGGCGTCAGACTGGTCCTACACGTCGTCCACCTACCACATTCCATATGCGCGCATCTGTGGA GACGCTGGATGCTTCATCGACCCTCTTTTCTCATCAGGCGTCCACCTGGCCATCGCAGGCGGCCTCTCGGCGGCA GTCACCATCGCCGCGTCGCTCAAGGGCGACTACGACGAGGAGACTGCAGGCTCGTGGCATTCCAAGAAGACGGTC GAAAGCTATGCCCGTTTCCTGCTGGCCGTCTGCGCCGCCACGAAGCAAATTCGATACGAGGATGAGCCCGTGATG CACGACTTTGACGAGGAGGGTTTGCAGAGGGCGTTTGATATCCTTCAACCCATTATCCAGGGTACGGTCGACGGC GAGGCCCGGGGAAGGACGACGGATATTGAAGTATCCCAGGTACTGAAATTCTGTTTCCGGGCGTTCAACTACGTC CCGCACGAGAAGAAGGAAGCCTTGTTCGAGAAGCTCGACAGACTCGACCCCGGTTTCGGTGAAGGGGATGCTGCG AAACGCATCGAGGAGATGCATAAGCACCTGACTGCCGAAGAGATGGAGATAGTAGAGGCACTGCGGAGTCGGCGA TTGATTCGCGAAGACGTCTTCACCCTGGGCAGCTTCACGCTCGACATCATTGACGGACTGGCGCCCAGGCTGGTG CGAGGCGAGCTCGGCCTCGTCAAGGCTAGCAAGGCCCGGCTCGACAGTCGTCACTTTTTATCGGCGCCTTTCTTG GATGGCAAGGTTGAGGCGATTCGGACGCATGGAGAGGGGATC |
| Transcript | >Ophio5|2110 ATGGCTGTTCCGAAAAGTTGTACAGTTCTGATCATTGGGGCCGGTCCTGCAGGATCATACGCGGCCTGTTGTTTG GCACGTGAGGGCATCGACACGGTTGTGCTCGAGGCAGACAAGTTTCCCCGATATCATATTGGAGAGAGCACGCTT CCTTCGCTGCGGCACTTCTTCAAGTTTATAGACGTTGACGATGCCTTTGATGCTTATGGCTTCTTCAAGAAGGGA AGTAGTCGCAACGGAGCAGTGTTTCGGCTCAATCAAGCTCATCCCGATGCGTTAACCGACTTCATCGAGGCGGGC GGGCCCGACGGTTATGCCTGGAACTTGATCCGGGCCGAATCCGACGACTTGCTCTTCAGGCACGCAAAAGCGTGC GGGGCTCACACCTTTGACGAAACCAAGGTTGACTCGATTCAATTCGAGCGAGGCACAGACAGGACATGCTTCGGT GAGGGTCAGGACAAGGCCATGGATTCAGGCCGGCCCGTATCGGCAACCTGGAGCCGCAAAGACGGCTCGGCCGGA ACCATCGCCTTCAAGTATCTCATTGATGCCAGTGGAAGACACGGAATTCTGAGCACCAAGTACCTAAAGAGCAGG AGGTTTAATCGCGGCTTCAAGAATGTCGCCAGTTGGGCCTATTGGAAGAGCGACAACTTATACGGTCAGGGAACG TCCTGGGAGGGCCTTCCGTATTTTGAGGCGCTGCAAGATGCCAGCGGTTGGTGTTGGTATATGCCGCTTCACGAC GGCACTCGCTCCGTCGGCATCGTCCAGGACCAAGCCATGGCGACGGATAAGAAGCGAAAGCTGGGGAAGCCATCG ACGTCGGAATTTTATAGGCAGTCTCTCGAGCTGGCCACTCGGACTAATGAGTTGCTCTCCGGGGCTACGCTTGCC AGCGATATCAAGTCGGCGTCAGACTGGTCCTACACGTCGTCCACCTACCACATTCCATATGCGCGCATCTGTGGA GACGCTGGATGCTTCATCGACCCTCTTTTCTCATCAGGCGTCCACCTGGCCATCGCAGGCGGCCTCTCGGCGGCA GTCACCATCGCCGCGTCGCTCAAGGGCGACTACGACGAGGAGACTGCAGGCTCGTGGCATTCCAAGAAGACGGTC GAAAGCTATGCCCGTTTCCTGCTGGCCGTCTGCGCCGCCACGAAGCAAATTCGATACGAGGATGAGCCCGTGATG CACGACTTTGACGAGGAGGGTTTGCAGAGGGCGTTTGATATCCTTCAACCCATTATCCAGGGTACGGTCGACGGC GAGGCCCGGGGAAGGACGACGGATATTGAAGTATCCCAGGTACTGAAATTCTGTTTCCGGGCGTTCAACTACGTC CCGCACGAGAAGAAGGAAGCCTTGTTCGAGAAGCTCGACAGACTCGACCCCGGTTTCGGTGAAGGGGATGCTGCG AAACGCATCGAGGAGATGCATAAGCACCTGACTGCCGAAGAGATGGAGATAGTAGAGGCACTGCGGAGTCGGCGA TTGATTCGCGAAGACGTCTTCACCCTGGGCAGCTTCACGCTCGACATCATTGACGGACTGGCGCCCAGGCTGGTG CGAGGCGAGCTCGGCCTCGTCAAGGCTAGCAAGGCCCGGCTCGACAGTCGTCACTTTTTATCGGCGCCTTTCTTG GATGGCAAGGTTGAGGCGATTCGGACGCATGGAGAGGGGATCTGA |
| Gene | >Ophio5|2110 ATGGCTGTTCCGAAAAGTTGTACAGTTCTGATCATTGGGGCCGGTCCTGCAGGATCATACGCGGCCTGTTGTTTG GCACGTGAGGGCATCGACACGGTTGTGCTCGAGGCAGACAAGTTTCCCCGGTTAGTGAGCAGCCTGTAACTTGAT TAGCATCTCGTTTTGACGGTTGGTAGATATCATATTGGAGAGAGCACGCTTCCTTCGCTGCGGCACTTCTTCAAG TTTATAGACGTTGACGATGCCTTTGATGCTTATGGCTTCTTCAAGAAGGGAAGTAGTCGCGTGCGGAAACGTACA GACTACAGAAAATGACTCTTAGCTTGCAGAACGGAGCAGTGTTTCGGCTCAATCAAGCTCATCCCGATGCGTGTA AGTCTGCATCTGCCACTGCATAAATCCTCCAGGCAATTGAGCTCACGTCTGATCAGTAACCGACTTCATCGAGGC GGGCGGGCCCGACGGTTATGCCTGGAACTTGATCCGGGCCGAATCCGACGACTTGCTCTTCAGGCACGCAAAAGC GTGCGGGGCTCACACCTTTGACGAAACCAAGGTTGACTCGATTCAATTCGAGCGAGGCACAGACAGGACATGCTT CGGTGAGGGTCAGGACAAGGCCATGGATTCAGGCCGGCCCGTATCGGCAACCTGGAGCCGCAAAGACGGCTCGGC CGGAACCATCGCCTTCAAGTATCTCATTGATGCCAGTGGAAGACACGGAATTCTGAGCACCAAGTACCTAAAGAG CAGGAGGTTTAATCGCGGCTTCAAGAATGTCGCCAGTTGGGCCTATTGGAAGAGCGACAACTTATACGGTCAGGG AACGTCCTGGGAGGGCCTTCCGTATTTTGAGGCGCTGCAAGGTCAGTTATTCAAGGCTTGCACTTGTCGTCCATC CATGTTCAACTCGGCGTGACAGATGCCAGCGGTTGGTGTTGGTATATGCCGCTTCACGACGGCACTCGCTCCGTC GGCATCGTCCAGGACCAAGCCATGGCGACGGATAAGAAGCGAAAGCTGGGGAAGCCATCGACGTCGGAATTTTAT AGGCAGTCTCTCGAGCTGGCCACTCGGACTAATGAGTTGCTCTCCGGGGCTACGCTTGCCAGCGATATCAAGTCG GCGTCAGACTGGTCCTACACGTCGTCCACCTACCACATTCCATATGCGCGCATCTGTGGAGACGCTGGATGCTTC ATCGACCCTCTTTTCTCATCAGGCGTCCACCTGGCCATCGCAGGCGGCCTCTCGGCGGCAGTCACCATCGCCGCG TCGCTCAAGGGCGACTACGACGAGGAGACTGCAGGCTCGTGGCATTCCAAGAAGACGGTCGAAAGCTATGCCCGT TTCCTGCTGGCCGTCTGCGCCGCCACGAAGCAAATTCGATACGAGGATGAGCCCGTGATGCACGACTTTGACGAG GAGGGTTTGCAGAGGGCGTTTGATATCCTTCAACCCAGTAAGAAAGCCGAGCGTAGCGGCATTCAAGAATAGGCT ATTGCAAAGCCGGCTAACATCAGCCTTCCAGTTATCCAGGGTACGGTCGACGGCGAGGCCCGGGGAAGGACGACG GATATTGAAGTATCCCAGGTACTGAAATTCTGTTTCCGGGCGTTCAACTACGTCCCGCACGAGAAGAAGGAAGCC TTGTTCGAGAAGCTCGACAGACTCGACCCCGGTTTCGGTGAAGGGGATGCTGCGAAACGCATCGAGGAGATGCAT AAGCACCTGACTGCCGAAGAGATGGAGATAGTAGAGGCACTGCGGAGTCGGCGATTGATTCGCGAAGACGTCTTC ACCCTGGGCAGCTTCACGCTCGACATCATTGACGGACTGGCGCCCAGGCTGGTGCGAGGCGAGCTCGGCCTCGTC AAGGCTAGCAAGGCCCGGCTCGACAGTCGTCACTTTTTATCGGCGCCTTTCTTGGATGGCAAGGTTGAGGCGATT CGGACGCATGGAGAGGGGATCTGA |