© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|2097 |
| Gene name | |
| Location | scaffold_185:7763..8134 |
| Strand | - |
| Gene length (bp) | 371 |
| Transcript length (bp) | 270 |
| Coding sequence length (bp) | 267 |
| Protein length (aa) | 89 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09803 | Pet100 | Pet100 | 6.4E-20 | 1 | 77 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P38958|PT100_YEAST | Protein PET100, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PET100 PE=1 SV=1 | 5 | 80 | 1.0E-14 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005739 | mitochondrion | Yes |
| GO:0033617 | mitochondrial cytochrome c oxidase assembly | Yes |
| GO:0043229 | intracellular organelle | No |
| GO:0065003 | protein-containing complex assembly | No |
| GO:0008150 | biological_process | No |
| GO:0017004 | cytochrome complex assembly | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0008535 | respiratory chain complex IV assembly | No |
| GO:0043226 | organelle | No |
| GO:0043933 | protein-containing complex organization | No |
| GO:0005575 | cellular_component | No |
| GO:0016043 | cellular component organization | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0022607 | cellular component assembly | No |
| GO:0009987 | cellular process | No |
| GO:0033108 | mitochondrial respiratory chain complex assembly | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 4 | 26 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 318.76 | 156.66 | 480.86 |
| CcL | In ants, during behavior modification | 210.96 | 91.42 | 330.49 |
| CcD | In ants, recently dead | 245.56 | 114.91 | 376.22 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.121261 | no |
| SC16a | CcD | 0.328058 | no |
| CcL | CcD | 0.617475 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|2097 MGGINLEIFKFGMYVMFPIGIMYYFGTNLDNRFAVPGFWPKPEECNKLPRDREEIEAEYHRIVARQRRRRALEEE KQKKESQAVRGDDD |
| Coding | >Ophio5|2097 ATGGGCGGCATCAACCTGGAAATCTTCAAGTTCGGCATGTACGTCATGTTCCCGATCGGCATCATGTATTACTTT GGCACCAACCTCGACAACCGCTTCGCCGTGCCGGGCTTCTGGCCCAAGCCCGAAGAGTGCAACAAGTTACCCCGC GACAGGGAAGAGATTGAGGCCGAATACCACCGCATCGTCGCGCGACAGCGGCGTCGTCGGGCGCTCGAGGAGGAG AAGCAGAAGAAGGAGTCGCAAGCGGTGCGGGGAGACGATGAC |
| Transcript | >Ophio5|2097 ATGGGCGGCATCAACCTGGAAATCTTCAAGTTCGGCATGTACGTCATGTTCCCGATCGGCATCATGTATTACTTT GGCACCAACCTCGACAACCGCTTCGCCGTGCCGGGCTTCTGGCCCAAGCCCGAAGAGTGCAACAAGTTACCCCGC GACAGGGAAGAGATTGAGGCCGAATACCACCGCATCGTCGCGCGACAGCGGCGTCGTCGGGCGCTCGAGGAGGAG AAGCAGAAGAAGGAGTCGCAAGCGGTGCGGGGAGACGATGACTGA |
| Gene | >Ophio5|2097 ATGGGCGGCATCAACCTGGAAATCTTCAAGGTAAAAATGACACACACACAACACACACACACACACACACACACA CAAAAGAAAAGTCTGATAGCGCAGCGGGCCCGCGTTGGATGCGCTGATGCTTCCAGTTCGGCATGTACGTCATGT TCCCGATCGGCATCATGTATTACTTTGGCACCAACCTCGACAACCGCTTCGCCGTGCCGGGCTTCTGGCCCAAGC CCGAAGAGTGCAACAAGTTACCCCGCGACAGGGAAGAGATTGAGGCCGAATACCACCGCATCGTCGCGCGACAGC GGCGTCGTCGGGCGCTCGAGGAGGAGAAGCAGAAGAAGGAGTCGCAAGCGGTGCGGGGAGACGATGACTGA |