Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|2061
Gene name
Locationscaffold_182:30474..30975
Strand-
Gene length (bp)501
Transcript length (bp)501
Coding sequence length (bp)498
Protein length (aa) 166

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 19 0.45

Transmembrane Domains

Domain # Start End Length
1 60 82 22
2 89 111 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 2.67 0.00 5.64
CcL In ants, during behavior modification 278.60 129.11 428.09
CcD In ants, recently dead 12.74 3.09 22.38

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.000286 yes
SC16a CcD 0.006181 yes
CcL CcD 0.000286 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|2061
MATSSLGLDLLRLAPLLSSTCSLLYAWDQHFFLGLLNRPEIRLRSRALLPTYFTHVFRRGLPFVLAAVAVSFGSG
ISNLLYLGPSSPLSWRCYVAGSVLAAAHLLYVPWIAPSCHQLLLLSPHSGDDDDHDPDPNALLDGWLSVNAWRSL
TVDLGAWIAFVVATAA
Coding >Ophio5|2061
ATGGCCACCTCCAGTCTGGGCCTCGACCTCCTCCGCCTCGCGCCCCTGCTCTCCTCCACCTGCTCGCTTCTCTAC
GCCTGGGACCAGCACTTCTTCTTGGGCCTCCTCAATCGGCCCGAGATCCGGCTTCGCAGTCGAGCCCTGTTGCCT
ACTTACTTCACCCACGTCTTTCGCCGCGGCCTGCCCTTCGTCCTCGCTGCCGTGGCCGTCTCGTTTGGCTCCGGA
ATCAGTAACCTCCTCTACCTCGGTCCTTCCTCTCCCCTCTCGTGGCGCTGCTATGTCGCTGGCTCCGTTCTCGCT
GCCGCTCACCTCCTTTACGTCCCTTGGATCGCCCCCAGCTGTCATCAACTGCTGCTGCTGTCTCCGCATTCGGGA
GACGATGATGACCATGACCCTGATCCCAACGCTTTGCTCGATGGTTGGCTTTCCGTCAATGCTTGGCGTAGCTTG
ACCGTCGACTTGGGCGCCTGGATCGCTTTTGTCGTGGCTACGGCGGCC
Transcript >Ophio5|2061
ATGGCCACCTCCAGTCTGGGCCTCGACCTCCTCCGCCTCGCGCCCCTGCTCTCCTCCACCTGCTCGCTTCTCTAC
GCCTGGGACCAGCACTTCTTCTTGGGCCTCCTCAATCGGCCCGAGATCCGGCTTCGCAGTCGAGCCCTGTTGCCT
ACTTACTTCACCCACGTCTTTCGCCGCGGCCTGCCCTTCGTCCTCGCTGCCGTGGCCGTCTCGTTTGGCTCCGGA
ATCAGTAACCTCCTCTACCTCGGTCCTTCCTCTCCCCTCTCGTGGCGCTGCTATGTCGCTGGCTCCGTTCTCGCT
GCCGCTCACCTCCTTTACGTCCCTTGGATCGCCCCCAGCTGTCATCAACTGCTGCTGCTGTCTCCGCATTCGGGA
GACGATGATGACCATGACCCTGATCCCAACGCTTTGCTCGATGGTTGGCTTTCCGTCAATGCTTGGCGTAGCTTG
ACCGTCGACTTGGGCGCCTGGATCGCTTTTGTCGTGGCTACGGCGGCCTGA
Gene >Ophio5|2061
ATGGCCACCTCCAGTCTGGGCCTCGACCTCCTCCGCCTCGCGCCCCTGCTCTCCTCCACCTGCTCGCTTCTCTAC
GCCTGGGACCAGCACTTCTTCTTGGGCCTCCTCAATCGGCCCGAGATCCGGCTTCGCAGTCGAGCCCTGTTGCCT
ACTTACTTCACCCACGTCTTTCGCCGCGGCCTGCCCTTCGTCCTCGCTGCCGTGGCCGTCTCGTTTGGCTCCGGA
ATCAGTAACCTCCTCTACCTCGGTCCTTCCTCTCCCCTCTCGTGGCGCTGCTATGTCGCTGGCTCCGTTCTCGCT
GCCGCTCACCTCCTTTACGTCCCTTGGATCGCCCCCAGCTGTCATCAACTGCTGCTGCTGTCTCCGCATTCGGGA
GACGATGATGACCATGACCCTGATCCCAACGCTTTGCTCGATGGTTGGCTTTCCGTCAATGCTTGGCGTAGCTTG
ACCGTCGACTTGGGCGCCTGGATCGCTTTTGTCGTGGCTACGGCGGCCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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