© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophio5|2037 |
| Gene name | |
| Location | scaffold_1806:34..916 |
| Strand | - |
| Gene length (bp) | 882 |
| Transcript length (bp) | 882 |
| Coding sequence length (bp) | 879 |
| Protein length (aa) | 293 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01674 | Lipase_2 | Lipase (class 2) | 3.0E-08 | 60 | 177 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P08658|LIP_PSEFR | Lipase OS=Pseudomonas fragi PE=3 SV=2 | 62 | 230 | 1.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016787 | hydrolase activity | Yes |
| GO:0016042 | lipid catabolic process | Yes |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0009056 | catabolic process | No |
| GO:0006629 | lipid metabolic process | No |
| GO:1901575 | organic substance catabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0008152 | metabolic process | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 21 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 9.27 | 2.68 | 15.86 |
| CcL | In ants, during behavior modification | 6.35 | 1.42 | 11.28 |
| CcD | In ants, recently dead | 3.39 | 0.50 | 6.28 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.338542 | no |
| SC16a | CcD | 0.007782 | yes |
| CcL | CcD | 0.115308 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|2037 MVSLARLLIAGLLSLAAVSASPVPEEQKQQQQQQQQHLEQLERELAAFGGTNDWSCKSANKPVVLLHGLFGSDKT DLYVFGKWLRRRGYCIFALTYGTYTPHLPFWAGIKPIAESSGEIAAFINEVRRRTGAIKVDVVGHSEGAFQALYV SKFRGMADSIDSIVAIAPPTHGTDVSGLYKYASLIGVRHLLDVVGCAACEELGTDGSAVLRLNDGRPIVQPGNSV TVITSRNDEIVTPPATAFVNEAGVRNLYVQDSCPRDIIGHVTEALDPNIWNLALNALERKFDRKFACI |
| Coding | >Ophio5|2037 ATGGTATCCCTCGCCAGACTTCTCATCGCAGGCCTGCTGTCGCTCGCCGCCGTTTCGGCATCACCAGTACCCGAG GAGCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCATCTGGAACAGCTGGAGCGGGAACTCGCCGCCTTCGGTGGA ACCAACGACTGGTCCTGCAAGAGCGCCAACAAGCCCGTCGTCCTGCTTCACGGCCTCTTCGGCAGCGACAAGACC GATCTCTACGTGTTCGGGAAATGGCTGCGCAGACGCGGATATTGCATCTTCGCCCTCACGTACGGCACCTACACG CCCCATCTACCCTTCTGGGCCGGCATCAAGCCCATCGCCGAGTCGTCGGGCGAGATCGCCGCCTTCATCAATGAG GTCCGGCGCCGCACGGGGGCTATCAAGGTCGACGTGGTCGGCCATTCCGAGGGCGCTTTCCAGGCTCTCTACGTG TCCAAGTTTCGGGGCATGGCCGACTCCATCGACTCCATCGTCGCCATCGCTCCGCCCACGCACGGCACCGACGTC TCCGGGCTCTACAAGTACGCCTCTTTGATCGGCGTCCGCCATCTCCTCGATGTCGTCGGCTGTGCTGCCTGTGAG GAATTAGGCACCGACGGTTCGGCCGTTCTTCGTCTCAACGACGGCCGGCCCATTGTACAGCCCGGAAATAGTGTC ACCGTCATCACCTCGCGCAATGATGAGATCGTCACCCCGCCCGCCACCGCCTTCGTCAACGAGGCCGGCGTCCGA AACCTCTACGTTCAGGATTCCTGTCCGCGCGACATCATCGGACACGTGACCGAGGCCCTCGATCCAAACATCTGG AATCTCGCTCTCAATGCCTTGGAGAGGAAGTTCGATCGCAAGTTTGCCTGCATC |
| Transcript | >Ophio5|2037 ATGGTATCCCTCGCCAGACTTCTCATCGCAGGCCTGCTGTCGCTCGCCGCCGTTTCGGCATCACCAGTACCCGAG GAGCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCATCTGGAACAGCTGGAGCGGGAACTCGCCGCCTTCGGTGGA ACCAACGACTGGTCCTGCAAGAGCGCCAACAAGCCCGTCGTCCTGCTTCACGGCCTCTTCGGCAGCGACAAGACC GATCTCTACGTGTTCGGGAAATGGCTGCGCAGACGCGGATATTGCATCTTCGCCCTCACGTACGGCACCTACACG CCCCATCTACCCTTCTGGGCCGGCATCAAGCCCATCGCCGAGTCGTCGGGCGAGATCGCCGCCTTCATCAATGAG GTCCGGCGCCGCACGGGGGCTATCAAGGTCGACGTGGTCGGCCATTCCGAGGGCGCTTTCCAGGCTCTCTACGTG TCCAAGTTTCGGGGCATGGCCGACTCCATCGACTCCATCGTCGCCATCGCTCCGCCCACGCACGGCACCGACGTC TCCGGGCTCTACAAGTACGCCTCTTTGATCGGCGTCCGCCATCTCCTCGATGTCGTCGGCTGTGCTGCCTGTGAG GAATTAGGCACCGACGGTTCGGCCGTTCTTCGTCTCAACGACGGCCGGCCCATTGTACAGCCCGGAAATAGTGTC ACCGTCATCACCTCGCGCAATGATGAGATCGTCACCCCGCCCGCCACCGCCTTCGTCAACGAGGCCGGCGTCCGA AACCTCTACGTTCAGGATTCCTGTCCGCGCGACATCATCGGACACGTGACCGAGGCCCTCGATCCAAACATCTGG AATCTCGCTCTCAATGCCTTGGAGAGGAAGTTCGATCGCAAGTTTGCCTGCATCTAA |
| Gene | >Ophio5|2037 ATGGTATCCCTCGCCAGACTTCTCATCGCAGGCCTGCTGTCGCTCGCCGCCGTTTCGGCATCACCAGTACCCGAG GAGCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCATCTGGAACAGCTGGAGCGGGAACTCGCCGCCTTCGGTGGA ACCAACGACTGGTCCTGCAAGAGCGCCAACAAGCCCGTCGTCCTGCTTCACGGCCTCTTCGGCAGCGACAAGACC GATCTCTACGTGTTCGGGAAATGGCTGCGCAGACGCGGATATTGCATCTTCGCCCTCACGTACGGCACCTACACG CCCCATCTACCCTTCTGGGCCGGCATCAAGCCCATCGCCGAGTCGTCGGGCGAGATCGCCGCCTTCATCAATGAG GTCCGGCGCCGCACGGGGGCTATCAAGGTCGACGTGGTCGGCCATTCCGAGGGCGCTTTCCAGGCTCTCTACGTG TCCAAGTTTCGGGGCATGGCCGACTCCATCGACTCCATCGTCGCCATCGCTCCGCCCACGCACGGCACCGACGTC TCCGGGCTCTACAAGTACGCCTCTTTGATCGGCGTCCGCCATCTCCTCGATGTCGTCGGCTGTGCTGCCTGTGAG GAATTAGGCACCGACGGTTCGGCCGTTCTTCGTCTCAACGACGGCCGGCCCATTGTACAGCCCGGAAATAGTGTC ACCGTCATCACCTCGCGCAATGATGAGATCGTCACCCCGCCCGCCACCGCCTTCGTCAACGAGGCCGGCGTCCGA AACCTCTACGTTCAGGATTCCTGTCCGCGCGACATCATCGGACACGTGACCGAGGCCCTCGATCCAAACATCTGG AATCTCGCTCTCAATGCCTTGGAGAGGAAGTTCGATCGCAAGTTTGCCTGCATCTAA |