© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|2022 |
| Gene name | |
| Location | scaffold_180:53..956 |
| Strand | + |
| Gene length (bp) | 903 |
| Transcript length (bp) | 507 |
| Coding sequence length (bp) | 504 |
| Protein length (aa) | 168 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04145 | Ctr | Ctr copper transporter family | 8.6E-33 | 24 | 155 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P38865|CTR2_YEAST | Copper transport protein CTR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CTR2 PE=1 SV=1 | 1 | 168 | 1.0E-30 |
| sp|Q9USV7|CTR6_SCHPO | Copper transport protein ctr6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ctr6 PE=1 SV=1 | 13 | 152 | 5.0E-17 |
| sp|Q8K211|COPT1_MOUSE | High affinity copper uptake protein 1 OS=Mus musculus GN=Slc31a1 PE=2 SV=1 | 13 | 168 | 2.0E-16 |
| sp|O94722|CTR4_SCHPO | Copper transport protein ctr4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ctr4 PE=1 SV=1 | 20 | 166 | 5.0E-16 |
| sp|O15431|COPT1_HUMAN | High affinity copper uptake protein 1 OS=Homo sapiens GN=SLC31A1 PE=1 SV=1 | 8 | 168 | 9.0E-15 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P38865|CTR2_YEAST | Copper transport protein CTR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CTR2 PE=1 SV=1 | 1 | 168 | 1.0E-30 |
| sp|Q9USV7|CTR6_SCHPO | Copper transport protein ctr6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ctr6 PE=1 SV=1 | 13 | 152 | 5.0E-17 |
| sp|Q8K211|COPT1_MOUSE | High affinity copper uptake protein 1 OS=Mus musculus GN=Slc31a1 PE=2 SV=1 | 13 | 168 | 2.0E-16 |
| sp|O94722|CTR4_SCHPO | Copper transport protein ctr4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ctr4 PE=1 SV=1 | 20 | 166 | 5.0E-16 |
| sp|O15431|COPT1_HUMAN | High affinity copper uptake protein 1 OS=Homo sapiens GN=SLC31A1 PE=1 SV=1 | 8 | 168 | 9.0E-15 |
| sp|Q5RAS6|COPT1_PONAB | High affinity copper uptake protein 1 OS=Pongo abelii GN=SLC31A1 PE=2 SV=1 | 9 | 168 | 5.0E-14 |
| sp|Q8WNR0|COPT1_PIG | High affinity copper uptake protein 1 OS=Sus scrofa GN=SLC31A1 PE=2 SV=1 | 14 | 168 | 2.0E-12 |
| sp|Q9JK41|COPT1_RAT | High affinity copper uptake protein 1 OS=Rattus norvegicus GN=Slc31a1 PE=2 SV=1 | 16 | 168 | 3.0E-12 |
| sp|Q9P7F9|CTR5_SCHPO | Copper transport protein ctr5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ctr5 PE=1 SV=1 | 20 | 166 | 1.0E-10 |
| sp|Q93VM8|COPT5_ARATH | Copper transporter 5 OS=Arabidopsis thaliana GN=COPT5 PE=1 SV=1 | 22 | 164 | 9.0E-08 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005375 | copper ion transmembrane transporter activity | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0035434 | copper ion transmembrane transport | Yes |
| GO:0000041 | transition metal ion transport | No |
| GO:0008150 | biological_process | No |
| GO:0098655 | cation transmembrane transport | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0046915 | transition metal ion transmembrane transporter activity | No |
| GO:0051234 | establishment of localization | No |
| GO:0098662 | inorganic cation transmembrane transport | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0006810 | transport | No |
| GO:0051179 | localization | No |
| GO:0003674 | molecular_function | No |
| GO:0034220 | ion transmembrane transport | No |
| GO:0005215 | transporter activity | No |
| GO:0055085 | transmembrane transport | No |
| GO:0006811 | ion transport | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| GO:0006825 | copper ion transport | No |
| GO:0030001 | metal ion transport | No |
| GO:0005575 | cellular_component | No |
| GO:0046873 | metal ion transmembrane transporter activity | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0098660 | inorganic ion transmembrane transport | No |
| GO:0006812 | cation transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 40 | 62 | 22 |
| 2 | 113 | 135 | 22 |
| 3 | 139 | 156 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|2022 MDHRHMGHDHGGHGGHDDMCSMNMLFTWDTTNLCIVFRQWHIRSTASLIFSLLAVILLAMLYEALRALSRRFEAS QERRIAAMPNDDLLGPAETTPLLHPGQNHYQASQRVQVIKSLFYALQNFYAFMLMLIFMTYNGWVMIAVSLGAFF GYLLFGQATSATKDNACH |
| Coding | >Ophio5|2022 ATGGACCACCGACACATGGGCCACGACCACGGCGGCCACGGCGGCCACGACGACATGTGCAGCATGAACATGCTC TTCACCTGGGACACGACCAACCTCTGCATCGTCTTTCGCCAGTGGCACATCCGCTCAACCGCCTCCCTCATCTTC TCCCTCCTGGCCGTCATCCTGCTCGCCATGCTGTACGAGGCCCTGCGCGCTCTCTCGCGTCGCTTCGAGGCTAGC CAGGAGAGGCGCATCGCCGCCATGCCCAACGATGATCTTCTTGGCCCTGCTGAGACGACTCCTTTACTGCATCCA GGGCAGAACCATTACCAGGCCAGTCAGCGCGTCCAGGTCATCAAATCTCTCTTTTACGCTCTGCAAAACTTTTAC GCCTTTATGCTCATGCTCATCTTTATGACGTACAACGGCTGGGTCATGATTGCCGTCTCCCTCGGCGCCTTCTTT GGATACCTGCTATTTGGACAGGCGACGTCGGCGACCAAGGATAACGCCTGTCAT |
| Transcript | >Ophio5|2022 ATGGACCACCGACACATGGGCCACGACCACGGCGGCCACGGCGGCCACGACGACATGTGCAGCATGAACATGCTC TTCACCTGGGACACGACCAACCTCTGCATCGTCTTTCGCCAGTGGCACATCCGCTCAACCGCCTCCCTCATCTTC TCCCTCCTGGCCGTCATCCTGCTCGCCATGCTGTACGAGGCCCTGCGCGCTCTCTCGCGTCGCTTCGAGGCTAGC CAGGAGAGGCGCATCGCCGCCATGCCCAACGATGATCTTCTTGGCCCTGCTGAGACGACTCCTTTACTGCATCCA GGGCAGAACCATTACCAGGCCAGTCAGCGCGTCCAGGTCATCAAATCTCTCTTTTACGCTCTGCAAAACTTTTAC GCCTTTATGCTCATGCTCATCTTTATGACGTACAACGGCTGGGTCATGATTGCCGTCTCCCTCGGCGCCTTCTTT GGATACCTGCTATTTGGACAGGCGACGTCGGCGACCAAGGATAACGCCTGTCATTAG |
| Gene | >Ophio5|2022 ATGGACCACCGACACATGGGCCACGACCACGGCGGCCACGGCGGCCACGACGACATGTGCAGCATGAACGTACGC CTCTCTCTCCCTCTCCCTCTNNNNNNNNNNCCTCTCTCTCTCTTCCTCTCCAGAAGCCGATCCCCCCGGTCTTTC CCCAACGCTGACAAGACTCGTCGTCGCAGATGCTCTTCACCTGGGACACGACCAACCTCTGCATCGTCTTTCGCC AGTGGCACATCCGCTCAACCGCCTCCCTCATCTTCTCCCTCCTGGCCGTCATCCTGCTCGCCATGCTGTACGAGG CCCTGCGCGCTCTCTCGCGTCGCTTCGAGGCTAGCCAGGAGAGGCGCATCGCCGCCATGCCCAGTGAGCTTCCTT TGCCCTCCCCACCTCCTCTCCCTCCCCNNNNNNNNNNNNNNNNNNCACCACCACCACCACCACCACGACGGGCAG TATCATATACACACACACATAAACAAACAAACAAACAAACAAGTCGATTGCTTCATCTACATTGCGCCACTTCTC TCCTGCTTCTATGGGACTTGTGCCAATGCTGAAACGTCGCCCGCTCCCCCGTCTCGTCCAGACGATGATCTTCTT GGCCCTGCTGAGACGACTCCTTTACTGCATCCAGGGCAGAACCATTACCAGGCCAGTCAGCGCGTCCAGGTCATC AAATCTCTCTTTTACGCTCTGCAAAACTTTTACGCCTTTATGCTCATGTGAGTCGAGTCTCCCCCCAATCCCTGC CTCTCGGTCATAGCTGAAAAAGTCGGCCTGCAAAGGCTCATCTTTATGACGTACAACGGCTGGGTCATGATTGCC GTCTCCCTCGGCGCCTTCTTTGGATACCTGCTATTTGGACAGGCGACGTCGGCGACCAAGGATAACGCCTGTCAT TAG |