Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|2017
Gene name
Locationscaffold_18:73957..74268
Strand-
Gene length (bp)311
Transcript length (bp)243
Coding sequence length (bp)240
Protein length (aa) 80

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular Signal peptide 0.0723 0.0599 0.9512 0.0414 0.0615 0.0024 0.0602 0.0864 0.0262 0.0024

SignalP

SignalP signal predicted Location Score
Yes 1 - 17 0.999784

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 129.28 44.09 214.46
CcL In ants, during behavior modification 4.23 0.00 11.57
CcD In ants, recently dead 8.99 0.00 19.78

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.008428 yes
SC16a CcD 0.000286 yes
CcL CcD 0.328431 no

Orthologs

Orthofinder run ID4
Orthogroup5434
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|4687
Ophiocordyceps australis map64 (Brazil) OphauB2|3198
Ophiocordyceps camponoti-floridani Ophcf2|00974
Ophiocordyceps camponoti-rufipedis Ophun1|1331
Ophiocordyceps kimflemingae Ophio5|2017 (this protein)
Ophiocordyceps subramaniannii Hirsu2|5965

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|2017
MKFLALTIAALASVVAASYEKECEPATYACSNEMGKPGWKVCNTSGKWEFAGYYPPKTHYEFNKENGSPYCLPDY
WKKEY
Coding >Ophio5|2017
ATGAAGTTCCTCGCCCTCACTATCGCGGCCCTGGCCTCCGTCGTCGCCGCTAGCTACGAGAAGGAGTGCGAGCCT
GCCACGTATGCCTGCTCCAACGAAATGGGCAAGCCTGGCTGGAAGGTCTGCAACACGAGTGGCAAGTGGGAGTTC
GCTGGCTACTATCCGCCCAAGACTCACTACGAGTTCAATAAGGAGAATGGCAGCCCCTACTGCCTTCCGGACTAC
TGGAAGAAGGAGTAC
Transcript >Ophio5|2017
ATGAAGTTCCTCGCCCTCACTATCGCGGCCCTGGCCTCCGTCGTCGCCGCTAGCTACGAGAAGGAGTGCGAGCCT
GCCACGTATGCCTGCTCCAACGAAATGGGCAAGCCTGGCTGGAAGGTCTGCAACACGAGTGGCAAGTGGGAGTTC
GCTGGCTACTATCCGCCCAAGACTCACTACGAGTTCAATAAGGAGAATGGCAGCCCCTACTGCCTTCCGGACTAC
TGGAAGAAGGAGTACTAA
Gene >Ophio5|2017
ATGAAGTTCCTCGCCCTCACTATCGCGGCCCTGGCCTCCGTCGTCGCCGCTAGCTACGAGAAGGAGTGCGAGCCT
GCCACGTATGCCTGCTCCAACGAAATGGGCAAGCCTGGCTGGAAGGTCTGCAACACGAGTGGCAAGTGGGAGGTG
AGTTTTCCTATCTCTTGACGATGCTTTCAAAATCTTGGCCTTAACTCTAACTGACGCTGCTTCAGTTCGCTGGCT
ACTATCCGCCCAAGACTCACTACGAGTTCAATAAGGAGAATGGCAGCCCCTACTGCCTTCCGGACTACTGGAAGA
AGGAGTACTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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