© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|200 |
| Gene name | |
| Location | scaffold_1031:2386..3934 |
| Strand | + |
| Gene length (bp) | 1548 |
| Transcript length (bp) | 1398 |
| Coding sequence length (bp) | 1395 |
| Protein length (aa) | 465 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10104 | Brr6_like_C_C | Di-sulfide bridge nucleocytoplasmic transport domain | 2.1E-36 | 244 | 366 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055088 | lipid homeostasis | Yes |
| GO:0031965 | nuclear membrane | Yes |
| GO:0031090 | organelle membrane | No |
| GO:0065007 | biological regulation | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0016020 | membrane | No |
| GO:0042592 | homeostatic process | No |
| GO:0005575 | cellular_component | No |
| GO:0065008 | regulation of biological quality | No |
| GO:0008150 | biological_process | No |
| GO:0048878 | chemical homeostasis | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Transmembrane domain | 0.1064 | 0.3936 | 0.0264 | 0.1066 | 0.1683 | 0.0152 | 0.5334 | 0.1408 | 0.2885 | 0.0069 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 248 | 267 | 19 |
| 2 | 351 | 370 | 19 |
| Orthofinder run ID | 4 |
| Orthogroup | 1021 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|200 MESRTSEGPMDWEYQGRGPLDPTSPFSHAARNAQRNLFGSPADSPVRPANPLPTPSKMQQQPPPQAARFTPQLPP RNMAPPFRNPAFSTPRRPFDEVVMSEASGAEDSPAATEVSDYPNDTPEADHRAEAHSAISMTPLKIDKSSRYGKF KKHAPGKGEIRGRRDASVGMRKRKRHNHDRDVGSVNRDYHGHDSEAWDSESESDNGAGGRRIWSRSAKRENQGAF ESFFQALNKYPNTPDHMQRWMQFGANLFLVSVLAYLGWSVVSTVRSDIYKANDVARQELVSRMTECQTQYTMNEC SKKDRPALRVMCDEWYDCMMQNPESILRVKVTAKQVAEIINEFSETMHLKAWGIVLAFILVCTTVNVGSLNRQGG HKPTAPAPIPQPSSAVADADAARSPGIAPGYMLVPVHTPRVSRRAQLDEGTDTDTSPLNLKAALSQFTPSRHKSP SKQFSAMKNRAPKQW |
| Coding | >Ophio5|200 ATGGAATCGAGGACGTCCGAAGGTCCCATGGACTGGGAATACCAGGGTCGTGGCCCTCTCGATCCCACCAGTCCG TTTTCACATGCGGCGAGGAACGCGCAGCGAAACTTGTTTGGCTCGCCCGCAGACTCTCCAGTCCGTCCCGCAAAC CCACTCCCGACGCCGTCCAAGATGCAGCAGCAACCACCGCCACAGGCAGCCCGCTTCACACCACAACTGCCTCCG AGGAACATGGCGCCTCCGTTTCGAAACCCAGCCTTCTCGACACCCAGACGGCCGTTTGATGAGGTGGTCATGTCG GAGGCGTCGGGCGCCGAGGACAGCCCTGCGGCGACGGAAGTGTCCGACTATCCCAACGATACGCCCGAGGCAGAC CACAGAGCAGAGGCCCACAGTGCCATCTCGATGACGCCGCTCAAGATCGACAAGTCAAGCCGTTATGGCAAGTTC AAGAAACACGCGCCGGGAAAGGGGGAGATACGGGGGCGCAGAGATGCCTCGGTCGGGATGAGAAAGCGCAAACGG CACAATCACGACAGAGACGTCGGGTCCGTCAATCGTGACTACCACGGGCACGACAGCGAAGCCTGGGACTCGGAA TCCGAGTCGGACAATGGCGCGGGCGGGCGGCGCATTTGGTCACGGTCCGCCAAGCGCGAGAACCAAGGGGCTTTC GAGTCGTTCTTCCAAGCCCTCAATAAATACCCCAACACGCCCGACCACATGCAGCGATGGATGCAATTCGGCGCC AACCTGTTTCTCGTCTCGGTGCTGGCCTACCTCGGCTGGTCCGTCGTGAGCACCGTTCGCAGCGACATATACAAG GCCAACGACGTGGCCCGACAAGAGCTCGTCAGCAGGATGACGGAGTGCCAGACGCAGTACACGATGAACGAATGC TCTAAAAAGGACCGTCCGGCCCTCCGAGTCATGTGCGACGAGTGGTACGACTGCATGATGCAGAACCCCGAGTCG ATTCTGAGAGTAAAGGTCACGGCAAAGCAGGTGGCGGAGATCATCAACGAGTTTTCCGAGACGATGCATCTCAAG GCCTGGGGTATCGTGCTGGCCTTTATCTTGGTGTGCACCACGGTCAATGTCGGGTCGCTCAACCGACAAGGCGGC CATAAGCCCACCGCTCCGGCACCGATACCTCAGCCGAGCAGCGCGGTGGCAGACGCCGATGCTGCGAGATCGCCC GGCATCGCTCCCGGATACATGTTGGTACCGGTGCATACGCCGAGGGTATCGCGCCGGGCACAGCTGGACGAGGGG ACAGACACGGACACGTCGCCGCTCAACCTGAAGGCGGCCCTGTCGCAGTTCACACCTTCCAGACACAAGAGTCCG AGTAAGCAGTTTAGCGCGATGAAGAACAGGGCACCGAAACAGTGG |
| Transcript | >Ophio5|200 ATGGAATCGAGGACGTCCGAAGGTCCCATGGACTGGGAATACCAGGGTCGTGGCCCTCTCGATCCCACCAGTCCG TTTTCACATGCGGCGAGGAACGCGCAGCGAAACTTGTTTGGCTCGCCCGCAGACTCTCCAGTCCGTCCCGCAAAC CCACTCCCGACGCCGTCCAAGATGCAGCAGCAACCACCGCCACAGGCAGCCCGCTTCACACCACAACTGCCTCCG AGGAACATGGCGCCTCCGTTTCGAAACCCAGCCTTCTCGACACCCAGACGGCCGTTTGATGAGGTGGTCATGTCG GAGGCGTCGGGCGCCGAGGACAGCCCTGCGGCGACGGAAGTGTCCGACTATCCCAACGATACGCCCGAGGCAGAC CACAGAGCAGAGGCCCACAGTGCCATCTCGATGACGCCGCTCAAGATCGACAAGTCAAGCCGTTATGGCAAGTTC AAGAAACACGCGCCGGGAAAGGGGGAGATACGGGGGCGCAGAGATGCCTCGGTCGGGATGAGAAAGCGCAAACGG CACAATCACGACAGAGACGTCGGGTCCGTCAATCGTGACTACCACGGGCACGACAGCGAAGCCTGGGACTCGGAA TCCGAGTCGGACAATGGCGCGGGCGGGCGGCGCATTTGGTCACGGTCCGCCAAGCGCGAGAACCAAGGGGCTTTC GAGTCGTTCTTCCAAGCCCTCAATAAATACCCCAACACGCCCGACCACATGCAGCGATGGATGCAATTCGGCGCC AACCTGTTTCTCGTCTCGGTGCTGGCCTACCTCGGCTGGTCCGTCGTGAGCACCGTTCGCAGCGACATATACAAG GCCAACGACGTGGCCCGACAAGAGCTCGTCAGCAGGATGACGGAGTGCCAGACGCAGTACACGATGAACGAATGC TCTAAAAAGGACCGTCCGGCCCTCCGAGTCATGTGCGACGAGTGGTACGACTGCATGATGCAGAACCCCGAGTCG ATTCTGAGAGTAAAGGTCACGGCAAAGCAGGTGGCGGAGATCATCAACGAGTTTTCCGAGACGATGCATCTCAAG GCCTGGGGTATCGTGCTGGCCTTTATCTTGGTGTGCACCACGGTCAATGTCGGGTCGCTCAACCGACAAGGCGGC CATAAGCCCACCGCTCCGGCACCGATACCTCAGCCGAGCAGCGCGGTGGCAGACGCCGATGCTGCGAGATCGCCC GGCATCGCTCCCGGATACATGTTGGTACCGGTGCATACGCCGAGGGTATCGCGCCGGGCACAGCTGGACGAGGGG ACAGACACGGACACGTCGCCGCTCAACCTGAAGGCGGCCCTGTCGCAGTTCACACCTTCCAGACACAAGAGTCCG AGTAAGCAGTTTAGCGCGATGAAGAACAGGGCACCGAAACAGTGGTGA |
| Gene | >Ophio5|200 ATGGAATCGAGGACGTCCGAAGGTCCCATGGACTGGGAATACCAGGGTCGTGGCCCTCTCGATCCCACCAGTCCG TTTTCACATGCGGCGAGGAACGCGCAGCGAAACTGTGAGCGTCCCAATCTGCAAGTCGAGGATCACGGGCCATGC TGGCCCCTTTGGAATTGGCCTCTACCGTTGAGGCGGCGACTGATGCAGATTCTCAAGTGTTTGGCTCGCCCGCAG ACTCTCCAGTCCGTCCCGCAAACCCACTCCCGACGCCGTCCAAGATGCAGCAGCAACCACCGCCACAGGCAGCCC GCTTCACACCACAACTGCCTCCGAGGAACATGGCGCCTCCGTTTCGAAACCCAGCCTTCTCGACACCCAGACGGC CGTTTGATGAGGTGGTCATGTCGGAGGCGTCGGGCGCCGAGGACAGCCCTGCGGCGACGGAAGTGTCCGACTATC CCAACGATACGCCCGAGGCAGACCACAGAGCAGAGGCCCACAGTGCCATCTCGATGACGCCGCTCAAGATCGACA AGTCAAGCCGTTATGGCAAGTTCAAGAAACACGCGCCGGGAAAGGGGGAGATACGGGGGCGCAGAGATGCCTCGG TCGGGATGAGAAAGCGCAAACGGCACAATCACGACAGAGACGTCGGGTCCGTCAATCGTGACTACCACGGGCACG ACAGCGAAGCCTGGGACTCGGAATCCGAGTCGGACAATGGCGCGGGCGGGCGGCGCATTTGGTCACGGTCCGCCA AGCGCGAGAACCAAGGGGCTTTCGAGTCGTTCTTCCAAGCCCTCAATAAATACCCCAACACGCCCGACCACATGC AGCGATGGATGCAATTCGGCGCCAACCTGTTTCTCGTCTCGGTGCTGGCCTACCTCGGCTGGTCCGTCGTGAGCA CCGTTCGCAGCGACATATACAAGGCCAACGACGTGGCCCGACAAGAGCTCGTCAGCAGGATGACGGAGTGCCAGA CGCAGTACACGATGAACGAATGCTCTAAAAAGGACCGTCCGGCCCTCCGAGTCATGTGCGACGAGTGGTACGACT GCATGATGCAGAACCCCGAGTCGATTCTGAGAGTAAAGGTCACGGCAAAGCAGGTGGCGGAGATCATCAACGAGT TTTCCGAGACGATGCATCTCAAGGCCTGGGTAAGTTGCTCCCGTCTCTCGTGGGCGTACAAGGTCGCCAACTCGC TTCCAGGGTATCGTGCTGGCCTTTATCTTGGTGTGCACCACGGTCAATGTCGGGTCGCTCAACCGACAAGGCGGC CATAAGCCCACCGCTCCGGCACCGATACCTCAGCCGAGCAGCGCGGTGGCAGACGCCGATGCTGCGAGATCGCCC GGCATCGCTCCCGGATACATGTTGGTACCGGTGCATACGCCGAGGGTATCGCGCCGGGCACAGCTGGACGAGGGG ACAGACACGGACACGTCGCCGCTCAACCTGAAGGCGGCCCTGTCGCAGTTCACACCTTCCAGACACAAGAGTCCG AGTAAGCAGTTTAGCGCGATGAAGAACAGGGCACCGAAACAGTGGTGA |