Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|1983
Gene name
Location	scaffold_179:14285..14971
Strand	-
Gene length (bp)	686
Transcript length (bp)	531
Coding sequence length (bp)	528
Protein length (aa)	176

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF16015	Promethin	Promethin	2.0E-28	45	147

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 69	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	70	92	22
2	97	119	22
3	129	148	19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	108.30	54.40	162.20
CcL	In ants, during behavior modification	21.24	6.68	35.81
CcD	In ants, recently dead	41.68	17.21	66.15

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.000286	yes
SC16a	CcD	0.000535	yes
CcL	CcD	0.041816	yes

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|1983 MASSQDEGGQQQQQQQQYSIPNPQSNGLSHLAASEVDAGLFQRCLDYVVAPSSRRRAYDYASSVASSRPILFSLV ASQLLFSFLPLLLFVAFAAATVAFALGAAVLFALFWVAFALLLLLPALLVASSIALLVWAWALFSFFVARWVWTN ANGAAAAKQDHHRHGIKAETKAENGD
Coding	>Ophio5\|1983 ATGGCCTCCTCGCAAGACGAAGGCGGCCAGCAGCAGCAGCAGCAGCAGCAGTACAGCATTCCCAACCCGCAGAGC AACGGCCTCTCTCATCTCGCCGCCTCCGAAGTCGACGCAGGTCTCTTTCAGCGCTGTCTCGATTACGTAGTCGCT CCGTCTTCTCGCCGTCGCGCATACGACTACGCCTCGTCCGTCGCCTCGTCGCGGCCGATCCTCTTCTCACTTGTC GCCTCGCAGCTACTCTTCTCCTTCCTCCCCCTTCTCCTCTTCGTCGCCTTCGCCGCCGCTACCGTCGCCTTCGCT CTCGGCGCCGCCGTCCTCTTCGCCCTCTTTTGGGTCGCTTTCGCCCTCCTCCTTCTCCTGCCAGCTTTGCTCGTC GCCTCTTCCATCGCCTTGCTCGTTTGGGCTTGGGCTTTGTTCAGCTTCTTCGTCGCTCGCTGGGTCTGGACCAAC GCCAACGGCGCCGCGGCCGCGAAGCAAGACCATCACCGCCATGGCATCAAGGCCGAGACCAAGGCCGAGAACGGG GAT
Transcript	>Ophio5\|1983 ATGGCCTCCTCGCAAGACGAAGGCGGCCAGCAGCAGCAGCAGCAGCAGCAGTACAGCATTCCCAACCCGCAGAGC AACGGCCTCTCTCATCTCGCCGCCTCCGAAGTCGACGCAGGTCTCTTTCAGCGCTGTCTCGATTACGTAGTCGCT CCGTCTTCTCGCCGTCGCGCATACGACTACGCCTCGTCCGTCGCCTCGTCGCGGCCGATCCTCTTCTCACTTGTC GCCTCGCAGCTACTCTTCTCCTTCCTCCCCCTTCTCCTCTTCGTCGCCTTCGCCGCCGCTACCGTCGCCTTCGCT CTCGGCGCCGCCGTCCTCTTCGCCCTCTTTTGGGTCGCTTTCGCCCTCCTCCTTCTCCTGCCAGCTTTGCTCGTC GCCTCTTCCATCGCCTTGCTCGTTTGGGCTTGGGCTTTGTTCAGCTTCTTCGTCGCTCGCTGGGTCTGGACCAAC GCCAACGGCGCCGCGGCCGCGAAGCAAGACCATCACCGCCATGGCATCAAGGCCGAGACCAAGGCCGAGAACGGG GATTGA
Gene	>Ophio5\|1983 ATGGCCTCCTCGCAAGACGAAGGCGGCCAGCAGCAGCAGCAGCAGCAGCAGTACAGCATTCCCAACCCGCAGAGC AACGGCCTCTCTCATCTCGCCGCCTCCGAAGTCGACGCAGGTCTCTTTCAGCGCTGTCTCGATTACGTAGTCGCT CCGTCTTCTCGCCGTCGCGCATACGACTACGCCTCGTCCGTCGCCTCGTCGCGGCCGATCCTCTTCGTCCGTATA CCCTCTCTCTCTCTCTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNTCTCTCTCTCTCTCTCTCCTTGTTCCATCTAGACAACTGACCCTCTGGAGCAGTCAC TTGTCGCCTCGCAGCTACTCTTCTCCTTCCTCCCCCTTCTCCTCTTCGTCGCCTTCGCCGCCGCTACCGTCGCCT TCGCTCTCGGCGCCGCCGTCCTCTTCGCCCTCTTTTGGGTCGCTTTCGCCCTCCTCCTTCTCCTGCCAGCTTTGC TCGTCGCCTCTTCCATCGCCTTGCTCGTTTGGGCTTGGGCTTTGTTCAGCTTCTTCGTCGCTCGCTGGGTCTGGA CCAACGCCAACGGCGCCGCGGCCGCGAAGCAAGACCATCACCGCCATGGCATCAAGGCCGAGACCAAGGCCGAGA ACGGGGATTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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