Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|1977
Gene name
Location	scaffold_179:472..1762
Strand	-
Gene length (bp)	1290
Transcript length (bp)	1290
Coding sequence length (bp)	1287
Protein length (aa)	429

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00153	Mito_carr	Mitochondrial carrier protein	1.4E-06	160	249

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 40	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	31.42	15.46	47.39
CcL	In ants, during behavior modification	48.51	25.77	71.26
CcD	In ants, recently dead	53.26	28.69	77.82

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.070527	no
SC16a	CcD	0.026348	yes
CcL	CcD	0.743583	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|1977 MSHEPSPQPNSSEETIPGRAPRSNAATAASAAGVRAVSAQLVAFYFRAPAKAFFRTRVDYLAFARSLQDASRVAE LKPSSSSSSSSWAATLRLWMRNSTAGVLTSVIRHQGWSVVPRQILPPLAANVSVGAVLYASYIHVLARLHPESAR ASKRTYPPPPPTSTFAAGFLAGGLQSVVAAPLDALQARYHHRHLLVPGDAGRPRSLWAFGAEKLREIGLRGILAG WTLSFTKDSLGSAVFFTTFEYVKAQAYYRFVTWYYGGLPTDMVDTLALKRPHGPPQQQDTKVIRPHYAIEPMFLL LAGASASFAQQLLLHPLTHFQLSHWDRLQDLDAEAVRYRQSDKKPPRRWRMLRAYYRAYRDTWANCIAEAATHGQ RPHRWLYRGFFSAAVRQVPSTSAGLIIFELVRRKYGFGTEEVRITKDGYDILLT
Coding	>Ophio5\|1977 ATGAGCCATGAGCCGAGCCCACAGCCGAACTCCTCGGAAGAAACCATCCCGGGCCGCGCCCCTCGAAGTAACGCG GCCACGGCCGCCTCTGCTGCCGGCGTCCGCGCCGTGAGCGCCCAGCTGGTAGCCTTTTACTTTCGCGCCCCAGCA AAGGCCTTCTTCCGCACACGCGTCGACTATCTGGCCTTTGCCCGCTCCCTTCAGGACGCGAGTCGCGTCGCAGAG CTGAAGCCATCGTCGTCGTCGTCGTCCTCGTCATGGGCTGCCACTTTGCGTCTCTGGATGCGCAACTCGACGGCT GGCGTCTTGACATCCGTCATTCGTCATCAGGGTTGGTCGGTCGTGCCGCGTCAGATCTTGCCGCCTCTGGCAGCC AATGTTAGTGTCGGGGCTGTGCTATACGCCAGTTACATTCATGTCCTTGCTCGGCTGCACCCTGAGAGTGCGAGG GCTAGCAAGAGGACGTATCCGCCGCCGCCGCCGACTTCGACTTTTGCTGCTGGCTTTTTGGCTGGTGGGCTGCAG AGCGTCGTAGCGGCGCCACTCGATGCCCTGCAGGCGCGTTACCATCATCGTCATCTGCTTGTCCCCGGTGACGCA GGTCGACCGCGTAGCCTCTGGGCCTTTGGAGCCGAGAAGCTTCGCGAGATCGGCCTGCGTGGTATCTTGGCTGGT TGGACCCTCTCGTTTACCAAGGATAGTCTCGGCAGCGCCGTCTTCTTTACCACCTTTGAGTACGTCAAGGCTCAG GCCTACTACCGCTTCGTCACCTGGTATTACGGCGGTTTGCCCACGGACATGGTCGACACGCTCGCCCTCAAGCGT CCTCATGGTCCTCCCCAACAACAAGATACGAAGGTGATACGCCCCCATTACGCCATTGAGCCCATGTTTCTTCTC CTCGCCGGCGCCAGCGCCTCCTTCGCCCAACAGCTCCTCCTCCACCCCTTGACGCACTTCCAACTCAGCCACTGG GACCGGCTCCAAGACCTCGACGCCGAAGCGGTCCGATATCGACAGTCGGACAAGAAGCCGCCGCGTCGGTGGAGG ATGCTGCGCGCCTACTATCGCGCCTACAGGGACACGTGGGCCAACTGCATCGCCGAAGCCGCGACCCATGGCCAG CGCCCGCACCGTTGGCTGTATCGCGGCTTCTTCTCCGCTGCTGTTCGTCAGGTGCCCAGCACGAGCGCGGGTTTG ATCATCTTTGAGCTCGTCAGGCGCAAGTACGGGTTTGGCACCGAGGAGGTTCGCATCACCAAGGATGGATATGAT ATTCTGCTCACT
Transcript	>Ophio5\|1977 ATGAGCCATGAGCCGAGCCCACAGCCGAACTCCTCGGAAGAAACCATCCCGGGCCGCGCCCCTCGAAGTAACGCG GCCACGGCCGCCTCTGCTGCCGGCGTCCGCGCCGTGAGCGCCCAGCTGGTAGCCTTTTACTTTCGCGCCCCAGCA AAGGCCTTCTTCCGCACACGCGTCGACTATCTGGCCTTTGCCCGCTCCCTTCAGGACGCGAGTCGCGTCGCAGAG CTGAAGCCATCGTCGTCGTCGTCGTCCTCGTCATGGGCTGCCACTTTGCGTCTCTGGATGCGCAACTCGACGGCT GGCGTCTTGACATCCGTCATTCGTCATCAGGGTTGGTCGGTCGTGCCGCGTCAGATCTTGCCGCCTCTGGCAGCC AATGTTAGTGTCGGGGCTGTGCTATACGCCAGTTACATTCATGTCCTTGCTCGGCTGCACCCTGAGAGTGCGAGG GCTAGCAAGAGGACGTATCCGCCGCCGCCGCCGACTTCGACTTTTGCTGCTGGCTTTTTGGCTGGTGGGCTGCAG AGCGTCGTAGCGGCGCCACTCGATGCCCTGCAGGCGCGTTACCATCATCGTCATCTGCTTGTCCCCGGTGACGCA GGTCGACCGCGTAGCCTCTGGGCCTTTGGAGCCGAGAAGCTTCGCGAGATCGGCCTGCGTGGTATCTTGGCTGGT TGGACCCTCTCGTTTACCAAGGATAGTCTCGGCAGCGCCGTCTTCTTTACCACCTTTGAGTACGTCAAGGCTCAG GCCTACTACCGCTTCGTCACCTGGTATTACGGCGGTTTGCCCACGGACATGGTCGACACGCTCGCCCTCAAGCGT CCTCATGGTCCTCCCCAACAACAAGATACGAAGGTGATACGCCCCCATTACGCCATTGAGCCCATGTTTCTTCTC CTCGCCGGCGCCAGCGCCTCCTTCGCCCAACAGCTCCTCCTCCACCCCTTGACGCACTTCCAACTCAGCCACTGG GACCGGCTCCAAGACCTCGACGCCGAAGCGGTCCGATATCGACAGTCGGACAAGAAGCCGCCGCGTCGGTGGAGG ATGCTGCGCGCCTACTATCGCGCCTACAGGGACACGTGGGCCAACTGCATCGCCGAAGCCGCGACCCATGGCCAG CGCCCGCACCGTTGGCTGTATCGCGGCTTCTTCTCCGCTGCTGTTCGTCAGGTGCCCAGCACGAGCGCGGGTTTG ATCATCTTTGAGCTCGTCAGGCGCAAGTACGGGTTTGGCACCGAGGAGGTTCGCATCACCAAGGATGGATATGAT ATTCTGCTCACTTGA
Gene	>Ophio5\|1977 ATGAGCCATGAGCCGAGCCCACAGCCGAACTCCTCGGAAGAAACCATCCCGGGCCGCGCCCCTCGAAGTAACGCG GCCACGGCCGCCTCTGCTGCCGGCGTCCGCGCCGTGAGCGCCCAGCTGGTAGCCTTTTACTTTCGCGCCCCAGCA AAGGCCTTCTTCCGCACACGCGTCGACTATCTGGCCTTTGCCCGCTCCCTTCAGGACGCGAGTCGCGTCGCAGAG CTGAAGCCATCGTCGTCGTCGTCGTCCTCGTCATGGGCTGCCACTTTGCGTCTCTGGATGCGCAACTCGACGGCT GGCGTCTTGACATCCGTCATTCGTCATCAGGGTTGGTCGGTCGTGCCGCGTCAGATCTTGCCGCCTCTGGCAGCC AATGTTAGTGTCGGGGCTGTGCTATACGCCAGTTACATTCATGTCCTTGCTCGGCTGCACCCTGAGAGTGCGAGG GCTAGCAAGAGGACGTATCCGCCGCCGCCGCCGACTTCGACTTTTGCTGCTGGCTTTTTGGCTGGTGGGCTGCAG AGCGTCGTAGCGGCGCCACTCGATGCCCTGCAGGCGCGTTACCATCATCGTCATCTGCTTGTCCCCGGTGACGCA GGTCGACCGCGTAGCCTCTGGGCCTTTGGAGCCGAGAAGCTTCGCGAGATCGGCCTGCGTGGTATCTTGGCTGGT TGGACCCTCTCGTTTACCAAGGATAGTCTCGGCAGCGCCGTCTTCTTTACCACCTTTGAGTACGTCAAGGCTCAG GCCTACTACCGCTTCGTCACCTGGTATTACGGCGGTTTGCCCACGGACATGGTCGACACGCTCGCCCTCAAGCGT CCTCATGGTCCTCCCCAACAACAAGATACGAAGGTGATACGCCCCCATTACGCCATTGAGCCCATGTTTCTTCTC CTCGCCGGCGCCAGCGCCTCCTTCGCCCAACAGCTCCTCCTCCACCCCTTGACGCACTTCCAACTCAGCCACTGG GACCGGCTCCAAGACCTCGACGCCGAAGCGGTCCGATATCGACAGTCGGACAAGAAGCCGCCGCGTCGGTGGAGG ATGCTGCGCGCCTACTATCGCGCCTACAGGGACACGTGGGCCAACTGCATCGCCGAAGCCGCGACCCATGGCCAG CGCCCGCACCGTTGGCTGTATCGCGGCTTCTTCTCCGCTGCTGTTCGTCAGGTGCCCAGCACGAGCGCGGGTTTG ATCATCTTTGAGCTCGTCAGGCGCAAGTACGGGTTTGGCACCGAGGAGGTTCGCATCACCAAGGATGGATATGAT ATTCTGCTCACTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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