Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1973
Gene name
Locationscaffold_178:22950..23692
Strand-
Gene length (bp)742
Transcript length (bp)549
Coding sequence length (bp)546
Protein length (aa) 182

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08534 Redoxin Redoxin 2.7E-24 30 181

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|O14313|PMP20_SCHPO Putative peroxiredoxin pmp20 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmp20 PE=2 SV=2 28 181 5.0E-32
sp|P30044|PRDX5_HUMAN Peroxiredoxin-5, mitochondrial OS=Homo sapiens GN=PRDX5 PE=1 SV=4 18 181 2.0E-26
sp|Q9GLW7|PRDX5_CHLAE Peroxiredoxin-5, mitochondrial OS=Chlorocebus aethiops GN=PRDX5 PE=2 SV=1 18 181 6.0E-26
sp|P99029|PRDX5_MOUSE Peroxiredoxin-5, mitochondrial OS=Mus musculus GN=Prdx5 PE=1 SV=2 17 181 9.0E-26
sp|Q9GLW9|PRDX5_PAPHA Peroxiredoxin-5, mitochondrial OS=Papio hamadryas GN=PRDX5 PE=2 SV=1 18 181 1.0E-25
[Show all]
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Swissprot ID Swissprot Description Start End E-value
sp|O14313|PMP20_SCHPO Putative peroxiredoxin pmp20 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmp20 PE=2 SV=2 28 181 5.0E-32
sp|P30044|PRDX5_HUMAN Peroxiredoxin-5, mitochondrial OS=Homo sapiens GN=PRDX5 PE=1 SV=4 18 181 2.0E-26
sp|Q9GLW7|PRDX5_CHLAE Peroxiredoxin-5, mitochondrial OS=Chlorocebus aethiops GN=PRDX5 PE=2 SV=1 18 181 6.0E-26
sp|P99029|PRDX5_MOUSE Peroxiredoxin-5, mitochondrial OS=Mus musculus GN=Prdx5 PE=1 SV=2 17 181 9.0E-26
sp|Q9GLW9|PRDX5_PAPHA Peroxiredoxin-5, mitochondrial OS=Papio hamadryas GN=PRDX5 PE=2 SV=1 18 181 1.0E-25
sp|Q9R063|PRDX5_RAT Peroxiredoxin-5, mitochondrial OS=Rattus norvegicus GN=Prdx5 PE=1 SV=1 17 181 1.0E-23
sp|Q9FR35|PRX2C_ORYSJ Peroxiredoxin-2C OS=Oryza sativa subsp. japonica GN=PRXIIC PE=1 SV=1 26 182 3.0E-23
sp|Q9XEX2|PRX2B_ARATH Peroxiredoxin-2B OS=Arabidopsis thaliana GN=PRXIIB PE=1 SV=1 26 173 1.0E-20
sp|Q9BGI1|PRDX5_BOVIN Peroxiredoxin-5, mitochondrial OS=Bos taurus GN=PRDX5 PE=2 SV=2 18 181 2.0E-20
sp|O22711|PRX2D_ARATH Peroxiredoxin-2D OS=Arabidopsis thaliana GN=PRXIID PE=1 SV=2 26 166 6.0E-20
sp|Q9SRZ4|PRX2C_ARATH Peroxiredoxin-2C OS=Arabidopsis thaliana GN=PRXIIC PE=1 SV=1 26 173 1.0E-19
sp|Q9SDD6|PRX2F_ORYSJ Peroxiredoxin-2F, mitochondrial OS=Oryza sativa subsp. japonica GN=PRXIIF PE=2 SV=1 51 182 2.0E-19
sp|Q9M7T0|PRX2F_ARATH Peroxiredoxin-2F, mitochondrial OS=Arabidopsis thaliana GN=PRXIIF PE=1 SV=2 51 181 4.0E-19
sp|Q949U7|PRX2E_ARATH Peroxiredoxin-2E, chloroplastic OS=Arabidopsis thaliana GN=PRXIIE PE=1 SV=2 1 166 2.0E-18
sp|O43099|PMP20_ASPFU Putative peroxiredoxin pmp20 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pmp20 PE=1 SV=1 50 182 4.0E-18
sp|P14292|PMPA_CANBO Putative peroxiredoxin-A OS=Candida boidinii GN=PMPA PE=1 SV=3 26 181 5.0E-18
sp|P14293|PMPB_CANBO Putative peroxiredoxin-B OS=Candida boidinii GN=PMPB PE=1 SV=3 62 181 9.0E-18
sp|Q7F8S5|PR2E2_ORYSJ Peroxiredoxin-2E-2, chloroplastic OS=Oryza sativa subsp. japonica GN=PRXIIE-2 PE=1 SV=1 23 166 1.0E-17
sp|Q5ASN8|PMP20_EMENI Putative peroxiredoxin pmp20 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=AN8692 PE=1 SV=1 54 182 2.0E-16
sp|P44758|PRX5_HAEIN Hybrid peroxiredoxin hyPrx5 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0572 PE=1 SV=1 49 176 4.0E-16
sp|P73728|Y1621_SYNY3 Putative peroxiredoxin sll1621 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1621 PE=1 SV=1 62 168 7.0E-16
sp|P38013|AHP1_YEAST Peroxiredoxin type-2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AHP1 PE=1 SV=4 62 177 2.0E-15
sp|B3EWI1|GSPRX_MARGR Glutathione amide-dependent peroxidase OS=Marichromatium gracile GN=garA PE=1 SV=1 55 181 5.0E-14
sp|P56578|MALF3_MALFU Putative peroxiredoxin (Fragment) OS=Malassezia furfur PE=1 SV=1 62 177 5.0E-14
sp|Q69TY4|PR2E1_ORYSJ Peroxiredoxin-2E-1, chloroplastic OS=Oryza sativa subsp. japonica GN=PRXIIE-1 PE=2 SV=1 30 166 7.0E-14
sp|Q01116|PMP20_LIPKO Putative peroxisomal peroxiredoxin OS=Lipomyces kononenkoae PE=2 SV=2 54 168 8.0E-14
sp|P56577|MALF2_MALFU Putative peroxiredoxin OS=Malassezia furfur PE=1 SV=1 53 160 2.0E-12
sp|Q53212|Y4VD_RHISN Putative peroxiredoxin y4vD OS=Rhizobium sp. (strain NGR234) GN=NGR_a01200 PE=3 SV=1 53 166 5.0E-11
sp|O69777|YRP2_RHIET Putative peroxiredoxin in rpoN2 3'region OS=Rhizobium etli PE=3 SV=2 53 168 1.0E-10
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GO

GO Term Description Terminal node
GO:0016491 oxidoreductase activity Yes
GO:0003824 catalytic activity No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 14 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 306.22 166.32 446.13
CcL In ants, during behavior modification 363.15 191.65 534.65
CcD In ants, recently dead 332.44 179.96 484.92

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.495148 no
SC16a CcD 0.760924 no
CcL CcD 0.743716 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1973
MAFRTALRRVALARPVARSFHSTPRACISVGDEVPIFDGLLEDSPGNKVNLADEFSSADGYIIGVPGAFTGTCSS
KHIPSYINHPKLKQAGRVFVVSVNDPFVMKAWREQMDPAGESSIRFIADPTAGFTKALDLGFDGANIFGGIRSKR
YALKIDGGKVTKAHIEPEVSSADVTMADKVLE
Coding >Ophio5|1973
ATGGCTTTCCGCACAGCTCTTCGGCGTGTCGCCCTCGCCCGTCCCGTTGCCCGGAGCTTCCACTCGACGCCCCGA
GCTTGCATCAGCGTTGGCGACGAAGTGCCCATCTTTGACGGGCTCTTGGAGGACTCGCCCGGCAACAAGGTTAAC
CTGGCAGACGAATTCAGTTCAGCTGATGGGTATATCATCGGCGTTCCAGGCGCCTTCACGGGGACCTGCTCGAGC
AAGCACATTCCTTCCTACATCAACCACCCCAAACTGAAGCAGGCTGGTCGCGTCTTTGTGGTCTCCGTCAACGAT
CCTTTTGTCATGAAGGCCTGGCGCGAGCAGATGGACCCTGCGGGCGAAAGCTCAATACGCTTCATAGCCGATCCG
ACAGCAGGCTTTACCAAGGCCCTTGATCTAGGCTTCGACGGCGCAAACATTTTCGGCGGCATCCGTAGCAAGCGA
TATGCCTTGAAGATTGACGGCGGAAAGGTGACCAAGGCGCACATCGAGCCCGAAGTGTCTAGTGCCGACGTTACA
ATGGCCGATAAGGTGTTGGAA
Transcript >Ophio5|1973
ATGGCTTTCCGCACAGCTCTTCGGCGTGTCGCCCTCGCCCGTCCCGTTGCCCGGAGCTTCCACTCGACGCCCCGA
GCTTGCATCAGCGTTGGCGACGAAGTGCCCATCTTTGACGGGCTCTTGGAGGACTCGCCCGGCAACAAGGTTAAC
CTGGCAGACGAATTCAGTTCAGCTGATGGGTATATCATCGGCGTTCCAGGCGCCTTCACGGGGACCTGCTCGAGC
AAGCACATTCCTTCCTACATCAACCACCCCAAACTGAAGCAGGCTGGTCGCGTCTTTGTGGTCTCCGTCAACGAT
CCTTTTGTCATGAAGGCCTGGCGCGAGCAGATGGACCCTGCGGGCGAAAGCTCAATACGCTTCATAGCCGATCCG
ACAGCAGGCTTTACCAAGGCCCTTGATCTAGGCTTCGACGGCGCAAACATTTTCGGCGGCATCCGTAGCAAGCGA
TATGCCTTGAAGATTGACGGCGGAAAGGTGACCAAGGCGCACATCGAGCCCGAAGTGTCTAGTGCCGACGTTACA
ATGGCCGATAAGGTGTTGGAATAA
Gene >Ophio5|1973
ATGGCTTTCCGCACAGCTCTTCGGCGTGTCGCCCTCGCCCGTCCCGTTGCCCGGAGCTTCCACTCGACGCCCCGA
GCTTGCATCAGCGTTGGCGACGAAGTGCCCATCTTTGACGGGCTCTTGGAGGACTCGCCCGGCAACAAGGTTAAC
CTGGCAGACGAATTCAGTTCAGCTGATGGGTATATCATCGGCGTTCCAGGCGCCTTCACGGGGACCTGCTCGAGC
AAGCACATTCCTTCCTACATCAACCACCCCAAACTGAAGCAGGCTGGTCGCGTCTTTGTGGTCTCCGTCAACGAT
CCTTTTGTGTAAGCGACTGGACCGTGTGCACCGGACTGATGGGAGACCGAAGAGCAAGCTGGCTGACCCACGCAG
CATGAAGGCCTGGCGCGAGCAGATGGACCCTGCGGGCGAAAGCTCAGTAAGTGCATCACAACGACTGTTGACACG
GGCACCGAGTGTTGATAAGGTCTTCATAGATACGCTTCATAGCCGATCCGACAGCAGGCTTTACCAAGGCCCTTG
ATCTAGGCTTCGACGGCGCAAACATTTTCGGCGGCATCCGTAGCAAGCGATATGCCTTGAAGATTGACGGCGGAA
AGGTGACCAAGGCGCACATCGAGCCCGAAGTGTCTAGTGCCGACGGTAAGCTGGATAACTCATGGTGGCTTAATT
TTGGGAATGAGGTCGCTAACATGTTCTTGTCGTGGCAGTTACAATGGCCGATAAGGTGTTGGAATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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