© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|1958 |
| Gene name | |
| Location | scaffold_177:17256..18186 |
| Strand | - |
| Gene length (bp) | 930 |
| Transcript length (bp) | 843 |
| Coding sequence length (bp) | 840 |
| Protein length (aa) | 280 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04193 | PQ-loop | PQ loop repeat | 1.7E-14 | 51 | 110 |
| PF04193 | PQ-loop | PQ loop repeat | 1.1E-07 | 167 | 220 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9R0Q9|MPU1_MOUSE | Mannose-P-dolichol utilization defect 1 protein OS=Mus musculus GN=Mpdu1 PE=1 SV=1 | 26 | 257 | 1.0E-42 |
| sp|O75352|MPU1_HUMAN | Mannose-P-dolichol utilization defect 1 protein OS=Homo sapiens GN=MPDU1 PE=1 SV=2 | 18 | 253 | 1.0E-40 |
| sp|Q60441|MPU1_CRIGR | Mannose-P-dolichol utilization defect 1 protein OS=Cricetulus griseus GN=MPDU1 PE=2 SV=2 | 26 | 256 | 1.0E-38 |
| sp|Q9VMW8|MPU1_DROME | Mannose-P-dolichol utilization defect 1 protein homolog OS=Drosophila melanogaster GN=CG3792 PE=1 SV=2 | 26 | 249 | 2.0E-35 |
| sp|Q20157|MPU1_CAEEL | Mannose-P-dolichol utilization defect 1 protein homolog OS=Caenorhabditis elegans GN=F38E1.9 PE=3 SV=2 | 19 | 257 | 8.0E-29 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9R0Q9|MPU1_MOUSE | Mannose-P-dolichol utilization defect 1 protein OS=Mus musculus GN=Mpdu1 PE=1 SV=1 | 26 | 257 | 1.0E-42 |
| sp|O75352|MPU1_HUMAN | Mannose-P-dolichol utilization defect 1 protein OS=Homo sapiens GN=MPDU1 PE=1 SV=2 | 18 | 253 | 1.0E-40 |
| sp|Q60441|MPU1_CRIGR | Mannose-P-dolichol utilization defect 1 protein OS=Cricetulus griseus GN=MPDU1 PE=2 SV=2 | 26 | 256 | 1.0E-38 |
| sp|Q9VMW8|MPU1_DROME | Mannose-P-dolichol utilization defect 1 protein homolog OS=Drosophila melanogaster GN=CG3792 PE=1 SV=2 | 26 | 249 | 2.0E-35 |
| sp|Q20157|MPU1_CAEEL | Mannose-P-dolichol utilization defect 1 protein homolog OS=Caenorhabditis elegans GN=F38E1.9 PE=3 SV=2 | 19 | 257 | 8.0E-29 |
| sp|Q8VY63|MPU12_ARATH | Mannose-P-dolichol utilization defect 1 protein homolog 2 OS=Arabidopsis thaliana GN=At4g07390 PE=2 SV=1 | 40 | 244 | 1.0E-26 |
| sp|Q9LTI3|MPU11_ARATH | Mannose-P-dolichol utilization defect 1 protein homolog 1 OS=Arabidopsis thaliana GN=At5g59470 PE=2 SV=1 | 40 | 258 | 1.0E-23 |
| sp|Q8C6U2|PQLC3_MOUSE | PQ-loop repeat-containing protein 3 OS=Mus musculus GN=Pqlc3 PE=1 SV=1 | 60 | 244 | 6.0E-14 |
| sp|Q8N755|PQLC3_HUMAN | PQ-loop repeat-containing protein 3 OS=Homo sapiens GN=PQLC3 PE=2 SV=1 | 60 | 244 | 3.0E-12 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 13 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 79 | 101 | 22 |
| 2 | 111 | 133 | 22 |
| 3 | 138 | 160 | 22 |
| 4 | 223 | 245 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1958 MDVIRATLQPVTHNLPLPLQDLGISLLGPRCYNTLVLEIDLSAHECLKLAVSKGLGIAIVCAASIVKLPQIIKLV RARSAHGVSFLSYLLETSALLITLAYNFRNRFPFSTYGESALILAQDLVISVLLLNYGGRAPAAAVLVAVLAAAA ALLFADGPLGHDTLGYLQAGAGLLGVASKLPQIMAIWQQGGTGQLSAFAVFNYLLGSLSRIFTTLQEVDDKLILY GFVSGFILNAILALQMLYYWNAPSEKARGKRREAPMAMTTATSMSGKSPTTRRRG |
| Coding | >Ophio5|1958 ATGGACGTCATCCGCGCAACTCTCCAACCCGTAACTCACAACCTTCCACTACCGCTTCAAGATCTGGGCATCTCC CTGCTCGGCCCGCGCTGCTATAACACGCTCGTCCTCGAAATCGACCTCTCGGCCCATGAATGTCTCAAGCTCGCC GTCAGCAAGGGCTTAGGCATCGCCATCGTCTGCGCCGCCTCCATCGTCAAGCTTCCGCAAATCATCAAGCTTGTA CGCGCCCGTTCCGCCCATGGCGTCTCCTTTCTTTCCTATTTGCTGGAGACGAGCGCGCTACTCATCACGCTCGCC TATAATTTTCGCAATCGTTTTCCTTTTAGTACCTATGGCGAGTCGGCTTTGATTCTCGCTCAGGATCTTGTCATC TCGGTTTTGCTCCTGAATTATGGCGGGAGAGCCCCGGCTGCCGCCGTACTCGTCGCTGTCCTGGCTGCTGCGGCC GCGCTGCTGTTCGCTGATGGTCCCTTGGGTCATGACACGTTGGGTTATCTGCAGGCTGGTGCCGGCCTTCTCGGC GTCGCGAGCAAGCTGCCGCAGATCATGGCCATCTGGCAACAGGGAGGCACAGGTCAACTCAGCGCCTTTGCCGTC TTCAATTACCTCCTCGGCTCGCTATCGCGCATCTTCACCACATTGCAAGAAGTCGACGATAAGCTGATACTCTAC GGCTTCGTGTCCGGTTTCATTCTCAACGCCATCCTCGCCCTGCAGATGCTGTACTACTGGAACGCACCGTCGGAG AAGGCCAGGGGTAAGCGCAGAGAGGCACCCATGGCCATGACCACGGCGACGTCCATGTCCGGGAAGAGTCCGACG ACTCGACGTCGAGGA |
| Transcript | >Ophio5|1958 ATGGACGTCATCCGCGCAACTCTCCAACCCGTAACTCACAACCTTCCACTACCGCTTCAAGATCTGGGCATCTCC CTGCTCGGCCCGCGCTGCTATAACACGCTCGTCCTCGAAATCGACCTCTCGGCCCATGAATGTCTCAAGCTCGCC GTCAGCAAGGGCTTAGGCATCGCCATCGTCTGCGCCGCCTCCATCGTCAAGCTTCCGCAAATCATCAAGCTTGTA CGCGCCCGTTCCGCCCATGGCGTCTCCTTTCTTTCCTATTTGCTGGAGACGAGCGCGCTACTCATCACGCTCGCC TATAATTTTCGCAATCGTTTTCCTTTTAGTACCTATGGCGAGTCGGCTTTGATTCTCGCTCAGGATCTTGTCATC TCGGTTTTGCTCCTGAATTATGGCGGGAGAGCCCCGGCTGCCGCCGTACTCGTCGCTGTCCTGGCTGCTGCGGCC GCGCTGCTGTTCGCTGATGGTCCCTTGGGTCATGACACGTTGGGTTATCTGCAGGCTGGTGCCGGCCTTCTCGGC GTCGCGAGCAAGCTGCCGCAGATCATGGCCATCTGGCAACAGGGAGGCACAGGTCAACTCAGCGCCTTTGCCGTC TTCAATTACCTCCTCGGCTCGCTATCGCGCATCTTCACCACATTGCAAGAAGTCGACGATAAGCTGATACTCTAC GGCTTCGTGTCCGGTTTCATTCTCAACGCCATCCTCGCCCTGCAGATGCTGTACTACTGGAACGCACCGTCGGAG AAGGCCAGGGGTAAGCGCAGAGAGGCACCCATGGCCATGACCACGGCGACGTCCATGTCCGGGAAGAGTCCGACG ACTCGACGTCGAGGATAG |
| Gene | >Ophio5|1958 ATGGACGTCATCCGCGCAACTCTCCAACCCGTAACTCACAACCTTCCACTACCGCTTCAAGATCTGGGCATCTCC CTGCTCGGCCCGCGCTGCTATAACACGCTCGTCCTCGAAATCGACCTCTCGGCCCATGAATGTCTCAAGCTCGCC GTCAGCAAGGGCTTAGGCATCGCCATCGTCTGCGCCGCCTCCATCGTCAAGCTTCCGCAAATCATCAAGCTTGTA CGCGCCCGTTCCGCCCATGGCGTCTCCTTTCTTTCCTATTTGCTGGAGACGAGCGCGCTACTCATCACGCTCGCC TATAATTTTCGCAATCGTTTTCCTTTTAGTACCTATGGCGAGTCGGCTTTGATTCTCGCTCAGGATCTTGTCATC TCGGTTTTGCTCCTGAATTATGGCGGGAGAGCCCCGGCTGCCGCCGTACTCGTCGCTGTCCTGGCTGCTGCGGCC GCGCTGCTGTTCGCTGATGGTCCCTTGGGTCATGACACGTTGGGTTATCTGCAGGCTGGTGCCGGCCTTCTCGGC GTCGCGAGCAAGCTGCCGCAGATCATGGCCATCTGGCAACAGGGAGGCACAGGTCAACTCAGCGCCTTTGCCGTG CGTTCCCCCCCCCCTTAAGCCTATTTTCGACTCTCATGATGCTCTCGTGACTGACCAGGTTGGCACTTCCCCCCC CCCTCCCAGGTCTTCAATTACCTCCTCGGCTCGCTATCGCGCATCTTCACCACATTGCAAGAAGTCGACGATAAG CTGATACTCTACGGCTTCGTGTCCGGTTTCATTCTCAACGCCATCCTCGCCCTGCAGATGCTGTACTACTGGAAC GCACCGTCGGAGAAGGCCAGGGGTAAGCGCAGAGAGGCACCCATGGCCATGACCACGGCGACGTCCATGTCCGGG AAGAGTCCGACGACTCGACGTCGAGGATAG |