Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1956
Gene name
Locationscaffold_177:14679..15743
Strand+
Gene length (bp)1064
Transcript length (bp)927
Coding sequence length (bp)924
Protein length (aa) 308

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13639 zf-RING_2 Ring finger domain 1.9E-07 194 243
PF12861 zf-ANAPC11 Anaphase-promoting complex subunit 11 RING-H2 finger 1.9E-06 162 247

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q9D9X6|ZSWM2_MOUSE E3 ubiquitin-protein ligase Zswim2 OS=Mus musculus GN=Zswim2 PE=1 SV=1 65 271 7.0E-11
sp|Q8NEG5|ZSWM2_HUMAN E3 ubiquitin-protein ligase ZSWIM2 OS=Homo sapiens GN=ZSWIM2 PE=1 SV=2 112 246 2.0E-06

GO

GO Term Description Terminal node
GO:0031145 anaphase-promoting complex-dependent catabolic process Yes
GO:0005680 anaphase-promoting complex Yes
GO:0008270 zinc ion binding Yes
GO:0061630 ubiquitin protein ligase activity Yes
GO:0097602 cullin family protein binding Yes
GO:0046872 metal ion binding No
GO:0044260 cellular macromolecule metabolic process No
GO:1990234 transferase complex No
GO:0003674 molecular_function No
GO:0044237 cellular metabolic process No
GO:0043169 cation binding No
GO:0043167 ion binding No
GO:0008152 metabolic process No
GO:0019941 modification-dependent protein catabolic process No
GO:1902494 catalytic complex No
GO:0031461 cullin-RING ubiquitin ligase complex No
GO:0030163 protein catabolic process No
GO:0004842 ubiquitin-protein transferase activity No
GO:0044238 primary metabolic process No
GO:0006508 proteolysis No
GO:0005515 protein binding No
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process No
GO:0032991 protein-containing complex No
GO:0000151 ubiquitin ligase complex No
GO:1901564 organonitrogen compound metabolic process No
GO:0008150 biological_process No
GO:0043170 macromolecule metabolic process No
GO:0051603 proteolysis involved in protein catabolic process No
GO:0140513 nuclear protein-containing complex No
GO:0043632 modification-dependent macromolecule catabolic process No
GO:0003824 catalytic activity No
GO:0006807 nitrogen compound metabolic process No
GO:1901575 organic substance catabolic process No
GO:0009057 macromolecule catabolic process No
GO:0000152 nuclear ubiquitin ligase complex No
GO:0044248 cellular catabolic process No
GO:0019787 ubiquitin-like protein transferase activity No
GO:0006511 ubiquitin-dependent protein catabolic process No
GO:0046914 transition metal ion binding No
GO:1901565 organonitrogen compound catabolic process No
GO:0016740 transferase activity No
GO:0005575 cellular_component No
GO:0019538 protein metabolic process No
GO:0009056 catabolic process No
GO:0140535 intracellular protein-containing complex No
GO:0010498 proteasomal protein catabolic process No
GO:0009987 cellular process No
GO:0005488 binding No
GO:0140096 catalytic activity, acting on a protein No
GO:0071704 organic substance metabolic process No
GO:0061659 ubiquitin-like protein ligase activity No
GO:0044265 cellular macromolecule catabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 50 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1956
MAALRLEHKRLRAGSSRERPIDLCNSSDDDDDGDNDAPPAKKQHLAGDNSNKQAATSEKRLRKFRTHPPQSFDVL
YDRALSQRFCVLERIRGGDAECPEETVLLAGSTGNVYTVHIGREPRCDCPHALRGNQCKHVLYVLERVLQAPFEL
VYQLALLSSELRTIFATAWRVDARSSCGPEETPDGVRRKTLEGDCPICYCELETRAPESVVWCRAACGQNMHRAC
LDMWAEKSISLVSCPMCRSPWKEENEDGDAPVEVGPRSRAWIEEGVASEGYANVAHRLGISTARDTSSYSRWYRD
PGSRDEWW
Coding >Ophio5|1956
ATGGCAGCACTGCGGCTCGAGCATAAGCGACTCCGAGCGGGCTCAAGCCGGGAGCGTCCGATCGACCTCTGCAAC
AGTAGCGACGATGACGACGACGGTGACAACGACGCACCACCAGCGAAGAAGCAGCATCTAGCGGGCGACAACAGC
AACAAGCAGGCGGCGACGTCTGAAAAGCGACTGCGAAAATTCCGCACTCACCCGCCGCAAAGCTTCGACGTCTTG
TACGACCGCGCGCTGTCGCAGCGCTTCTGCGTGCTGGAGCGGATACGCGGCGGCGACGCAGAGTGTCCCGAGGAG
ACAGTTTTGCTGGCCGGTTCGACGGGCAATGTCTACACGGTGCATATTGGGCGGGAACCTCGTTGTGACTGCCCG
CACGCGCTGCGTGGGAATCAGTGCAAGCATGTCCTCTACGTGCTCGAGCGTGTGCTTCAAGCTCCCTTTGAACTG
GTCTACCAACTCGCGCTGCTGAGTTCGGAGCTCCGAACCATCTTCGCCACGGCCTGGCGGGTCGACGCCCGTTCA
TCTTGCGGCCCGGAGGAAACGCCAGACGGGGTGCGACGGAAGACGTTGGAGGGAGACTGCCCGATTTGCTACTGC
GAGCTCGAGACGCGGGCGCCCGAGTCGGTGGTTTGGTGCCGGGCTGCGTGCGGACAGAACATGCACCGCGCCTGT
CTCGACATGTGGGCGGAGAAGAGCATCAGCCTCGTCTCCTGTCCCATGTGTCGTAGTCCGTGGAAGGAGGAGAAC
GAAGACGGTGATGCTCCGGTGGAGGTTGGGCCGCGGAGTCGTGCTTGGATTGAGGAAGGGGTTGCGAGTGAGGGG
TATGCCAATGTTGCTCATAGGCTGGGCATCTCTACCGCTCGAGATACGAGCTCTTATTCTAGGTGGTATCGTGAC
CCTGGCAGTCGGGACGAGTGGTGG
Transcript >Ophio5|1956
ATGGCAGCACTGCGGCTCGAGCATAAGCGACTCCGAGCGGGCTCAAGCCGGGAGCGTCCGATCGACCTCTGCAAC
AGTAGCGACGATGACGACGACGGTGACAACGACGCACCACCAGCGAAGAAGCAGCATCTAGCGGGCGACAACAGC
AACAAGCAGGCGGCGACGTCTGAAAAGCGACTGCGAAAATTCCGCACTCACCCGCCGCAAAGCTTCGACGTCTTG
TACGACCGCGCGCTGTCGCAGCGCTTCTGCGTGCTGGAGCGGATACGCGGCGGCGACGCAGAGTGTCCCGAGGAG
ACAGTTTTGCTGGCCGGTTCGACGGGCAATGTCTACACGGTGCATATTGGGCGGGAACCTCGTTGTGACTGCCCG
CACGCGCTGCGTGGGAATCAGTGCAAGCATGTCCTCTACGTGCTCGAGCGTGTGCTTCAAGCTCCCTTTGAACTG
GTCTACCAACTCGCGCTGCTGAGTTCGGAGCTCCGAACCATCTTCGCCACGGCCTGGCGGGTCGACGCCCGTTCA
TCTTGCGGCCCGGAGGAAACGCCAGACGGGGTGCGACGGAAGACGTTGGAGGGAGACTGCCCGATTTGCTACTGC
GAGCTCGAGACGCGGGCGCCCGAGTCGGTGGTTTGGTGCCGGGCTGCGTGCGGACAGAACATGCACCGCGCCTGT
CTCGACATGTGGGCGGAGAAGAGCATCAGCCTCGTCTCCTGTCCCATGTGTCGTAGTCCGTGGAAGGAGGAGAAC
GAAGACGGTGATGCTCCGGTGGAGGTTGGGCCGCGGAGTCGTGCTTGGATTGAGGAAGGGGTTGCGAGTGAGGGG
TATGCCAATGTTGCTCATAGGCTGGGCATCTCTACCGCTCGAGATACGAGCTCTTATTCTAGGTGGTATCGTGAC
CCTGGCAGTCGGGACGAGTGGTGGTAA
Gene >Ophio5|1956
ATGGCAGCACTGCGGCTCGAGCATAAGCGACTCCGAGCGGGCTCAAGCCGGGAGCGTCCGATCGACCTCTGCAAC
AGTAGCGACGATGACGACGACGGTGACAACGACGCACCACCAGCGAAGAAGCAGCATCTAGCGGGCGACAACAGC
AACAAGCAGGCGGCGACGTCTGAAAAGCGACTGCGAAAATTCCGCACTCACCCGCCGCAAAGCTTCGACGTCTTG
TACGACCGCGCGCTGTCGCAGCGCTTCTGCGTGCTGGAGCGGATACGCGGCGGCGACGCAGAGTGTCCCGAGGAG
ACAGTTTTGCTGGCCGGTTCGACGGGCAATGTCTACACGGTGCATATTGGGCGGGAACCTCGTTGTGACTGCCCG
CACGCGCTGCGTGGGAATCAGTGCAAGCATGTCCTCTACGTAAGGAAACGTTCCCTCACTTGATCTAATAAGAAA
AAAAGGGGGAAATGGAGGCGGTGCTGACGAGATTGCGGGAATAGGTGCTCGAGCGTGTGCTTCAAGCTCCCTTTG
AACTGGTCTACCAACTCGCGCTGCTGAGTTCGGAGCTCCGAACCATCTTCGCCACGGCCTGGCGGGTCGACGCCC
GTTCATCTTGCGGCCCGGAGGAAACGCCAGACGGGGTGCGACGGAAGACGTTGGAGGGAGACTGCCCGATTTGCT
ACTGCGAGCTCGAGACGCGGGCGCCCGAGTCGGTGGTTTGGTGCCGGGCTGCGTGCGGACAGAACATGCACCGCG
CCTGTCTCGACATGTGGGCGGAGAAGAGCATCAGCCTCGTCTCCTGTCCCATGTGTCGTAGTCCGTGGAAGGAGG
AGAACGAAGACGGTGATGCTCCGGTGGAGGTTGGGCCGCGGAGTCGTGCTTGGATTGAGGAAGGGGTTGCGAGTG
AGGGGTATGCCAATGTTGCTCATAGGCTGGGCATCTCTACCGCTCGAGGTTAGGACTCGTTTTTTTTTTGGTGGT
ACGAGTGGTTGTGCTGACGCGGTCTGATAGATACGAGCTCTTATTCTAGGTGGTATCGTGACCCTGGCAGTCGGG
ACGAGTGGTGGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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