Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1949
Gene name
Locationscaffold_176:30977..32086
Strand+
Gene length (bp)1109
Transcript length (bp)1059
Coding sequence length (bp)1056
Protein length (aa) 352

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF16483 Glyco_hydro_64 Beta-1,3-glucanase 1.3E-111 6 347

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P22222|E13B_CELCE Glucan endo-1,3-beta-glucosidase OS=Cellulosimicrobium cellulans PE=1 SV=1 6 347 8.0E-26
sp|Q59146|E13B_ARTSW Glucan endo-1,3-beta-glucosidase OS=Arthrobacter sp. (strain YCWD3) GN=glcI PE=3 SV=1 6 347 6.0E-25

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1949
MKLAPTLDVVLRNDLDDGSELYAHVTGSDDKGLVLLTADGKTLHRPKSPSSTLQPIAADCAIKLGGGSRTVKMPR
ISAARIWFCKNGPLTFLVNPGPALVEPSATNPSDANYNLDWGFCEFTWNERELYANVSFVDFVSLPVSLRLVTGA
GEVKIVPGLLPDGRERIAVALQQQAARDGRGWDKLVIRPDGYGAAPLRVLSPNAGAVLVPGLFDGYYQAYVDAVW
RRYAADHLTVDTQFTWGKVRGRVRPGDDRLVFADGRCSFSRPSAADVFSCSTGPFAAGGAGQDPSEQMLRLNIGA
RLAAALNRSTLLANPDQPHGEVVDRYYQEAVTNHYARACHEAAIEGRVRFCQ
Coding >Ophio5|1949
ATGAAATTGGCTCCGACCCTCGACGTCGTCCTACGCAATGACTTGGACGACGGCTCGGAGCTCTACGCTCACGTC
ACAGGGTCCGACGACAAGGGCCTCGTGCTGTTGACGGCCGATGGCAAGACGCTTCACCGGCCCAAGTCGCCCAGT
TCGACGCTTCAGCCCATCGCGGCCGACTGCGCCATCAAGCTGGGCGGAGGCTCACGAACCGTCAAGATGCCGCGC
ATCTCGGCCGCGCGCATCTGGTTTTGTAAAAATGGGCCTCTGACCTTCTTGGTCAACCCGGGACCGGCGCTGGTG
GAGCCTTCGGCGACGAACCCGTCCGACGCCAACTATAACCTCGACTGGGGCTTCTGTGAGTTCACGTGGAACGAG
CGTGAGCTGTACGCCAACGTGTCCTTTGTCGACTTCGTCAGCCTGCCCGTCTCGCTGCGCCTCGTGACCGGAGCC
GGAGAGGTCAAGATCGTTCCGGGACTCTTGCCAGACGGCCGGGAGCGCATCGCCGTAGCGCTGCAGCAGCAGGCA
GCTCGCGACGGCCGCGGATGGGATAAGCTCGTCATCCGTCCCGACGGCTACGGCGCCGCCCCGCTCCGCGTCCTC
AGCCCCAACGCCGGCGCCGTTCTGGTCCCGGGCCTCTTCGACGGCTATTATCAGGCATACGTCGACGCCGTCTGG
CGCAGGTACGCGGCCGACCATCTGACCGTCGACACGCAATTCACCTGGGGCAAGGTCCGCGGTCGGGTCCGGCCC
GGCGATGACCGTCTTGTCTTCGCCGACGGCCGCTGCTCTTTTTCCCGGCCCTCGGCCGCCGACGTCTTCTCCTGC
AGCACGGGGCCCTTTGCCGCCGGTGGTGCCGGTCAGGATCCGTCGGAGCAGATGCTGAGGCTCAATATCGGCGCC
CGGCTCGCTGCTGCCCTGAACCGCTCTACGCTGCTGGCCAACCCGGACCAGCCGCATGGCGAGGTTGTCGACCGG
TACTACCAGGAGGCCGTGACGAATCACTACGCGCGCGCCTGTCACGAGGCCGCCATCGAGGGACGCGTCCGGTTT
TGTCAA
Transcript >Ophio5|1949
ATGAAATTGGCTCCGACCCTCGACGTCGTCCTACGCAATGACTTGGACGACGGCTCGGAGCTCTACGCTCACGTC
ACAGGGTCCGACGACAAGGGCCTCGTGCTGTTGACGGCCGATGGCAAGACGCTTCACCGGCCCAAGTCGCCCAGT
TCGACGCTTCAGCCCATCGCGGCCGACTGCGCCATCAAGCTGGGCGGAGGCTCACGAACCGTCAAGATGCCGCGC
ATCTCGGCCGCGCGCATCTGGTTTTGTAAAAATGGGCCTCTGACCTTCTTGGTCAACCCGGGACCGGCGCTGGTG
GAGCCTTCGGCGACGAACCCGTCCGACGCCAACTATAACCTCGACTGGGGCTTCTGTGAGTTCACGTGGAACGAG
CGTGAGCTGTACGCCAACGTGTCCTTTGTCGACTTCGTCAGCCTGCCCGTCTCGCTGCGCCTCGTGACCGGAGCC
GGAGAGGTCAAGATCGTTCCGGGACTCTTGCCAGACGGCCGGGAGCGCATCGCCGTAGCGCTGCAGCAGCAGGCA
GCTCGCGACGGCCGCGGATGGGATAAGCTCGTCATCCGTCCCGACGGCTACGGCGCCGCCCCGCTCCGCGTCCTC
AGCCCCAACGCCGGCGCCGTTCTGGTCCCGGGCCTCTTCGACGGCTATTATCAGGCATACGTCGACGCCGTCTGG
CGCAGGTACGCGGCCGACCATCTGACCGTCGACACGCAATTCACCTGGGGCAAGGTCCGCGGTCGGGTCCGGCCC
GGCGATGACCGTCTTGTCTTCGCCGACGGCCGCTGCTCTTTTTCCCGGCCCTCGGCCGCCGACGTCTTCTCCTGC
AGCACGGGGCCCTTTGCCGCCGGTGGTGCCGGTCAGGATCCGTCGGAGCAGATGCTGAGGCTCAATATCGGCGCC
CGGCTCGCTGCTGCCCTGAACCGCTCTACGCTGCTGGCCAACCCGGACCAGCCGCATGGCGAGGTTGTCGACCGG
TACTACCAGGAGGCCGTGACGAATCACTACGCGCGCGCCTGTCACGAGGCCGCCATCGAGGGACGCGTCCGGTTT
TGTCAATGA
Gene >Ophio5|1949
ATGAAATTGGCTCCGACCCTCGACGTCGTCCTACGCAATGACTTGGACGACGGCTCGGAGCTCTACGCTCACGTC
ACAGGGTCCGACGACAAGGGCCTCGTGCTGTTGACGGCCGATGGCAAGACGCTTCACCGGCCCAAGTCGCCCAGT
TCGACGCTTCAGCCCATCGCGGCCGACTGCGCCATCAAGCTGGGCGGAGGCTCACGAACCGTCAAGATGCCGCGC
ATCTCGGCCGCGCGCATCTGGTTTTGTAAAAATGGGCCTCTGACCTTCTTGGTCAACCCGGGACCGGCGCTGGTG
GAGCCTTCGGCGACGAACCCGTCCGACGCCAACTATAACCTCGACTGGGGCTTCTGTGAGTTCACGTGGAACGAG
CGTGAGCTGTACGCCAACGTGTCCTTTGTCGACTTCGTCAGCCTGCCCGTCTCGCTGCGCCTCGTGACCGGAGCC
GGAGAGGTCAAGATCGTTCCGGGACTCTTGCCAGACGGCCGGGAGCGCATCGCCGTAGCGCTGCAGCAGCAGGCA
GCTCGCGACGGCCGCGGATGGGATAAGCTCGTCATCCGTCCCGACGGCTACGGCGCCGCCCCGCTCCGCGTCCTC
AGCCCCAACGCCGGCGCCGTTCTGGTCCCGGGCCTCTTCGACGGCTATTATCAGGCATACGTCGACGCCGTCTGG
CGCAGGTACGCGGCCGACCATCTGACCGTCGACACGCAATTCACCTGGGGCAAGGTCCGCGGTCGGGTCCGGCCC
GGCGATGACCGTCTTGTCTTCGCCGACGGCCGCTGCTCTTTTTCCCGGCCCTCGGCCGCCGACGTCTTCTCCTGC
AGCACGGGGCCCTTTGCCGCCGGTGGTGCCGGTCAGGATCCGTCGGAGCAGATGCTGAGGCTCAATATCGGCGCC
CGGCTCGCTGCTGCCCTGAACCGCTCTACGCTGCTGGCCAACCCGGACCAGCCGCATGGCGAGGTTGTCGACCGG
TACTACCAGGAGGCCGTGACGAATCACTACGCGCGCGCCTGTCACGAGGCCGCCATCGAGGGACGCGGTTACGCG
TTTCCCTACGATGATGTCGGGCCAGCGGGGGGCAAGGACCAGTCCGGTTTTGTCAATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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