© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|1948 |
| Gene name | |
| Location | scaffold_176:29022..30467 |
| Strand | + |
| Gene length (bp) | 1445 |
| Transcript length (bp) | 1191 |
| Coding sequence length (bp) | 1188 |
| Protein length (aa) | 396 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00722 | Glyco_hydro_16 | Glycosyl hydrolases family 16 | 1.0E-12 | 105 | 253 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P45797|GUB_PAEPO | Beta-glucanase OS=Paenibacillus polymyxa GN=gluB PE=3 SV=1 | 120 | 250 | 5.0E-07 |
| sp|Q53317|XYND_RUMFL | Xylanase/beta-glucanase OS=Ruminococcus flavefaciens GN=xynD PE=3 SV=2 | 120 | 249 | 1.0E-06 |
| sp|P04957|GUB_BACSU | Beta-glucanase OS=Bacillus subtilis (strain 168) GN=bglS PE=1 SV=2 | 126 | 250 | 3.0E-06 |
| sp|P27051|GUB_BACLI | Beta-glucanase OS=Bacillus licheniformis GN=bg1 PE=1 SV=1 | 126 | 273 | 5.0E-06 |
| sp|P23904|GUB_PAEMA | Beta-glucanase OS=Paenibacillus macerans PE=1 SV=2 | 120 | 250 | 6.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0008150 | biological_process | No |
| GO:0003674 | molecular_function | No |
| GO:0008152 | metabolic process | No |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 20 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1948 MKSLGFLVLVSLTPRLVAALCECGFAVKGTDDGHGPWLFTNVLESDFTKGVKVSENKDWVRQQFNVSAKAGRGRY GKSFSLDNILSHDPTVRSQGASALQLRVGSMLNKDAVTAAEMDSARNDLHWGSYRAGMKLTAVNGTCSAFFWYLN DTQEIDMEFLSHEYDADKGVYPINLAIQSKKSMEAGYDATRTATYRRVNLTFDPTAAFHEYRFDYLPGRVAFYAD SVKLAEMEGDEMPKTSGHLILQHWSNGDPMWSGGPPAQDALLTVSYVKAYFNSSDNKASWEERCGQSQGTAICTI PDVTAANASTGGHFFTDGRSRKEGGEADSGCAGEGGYGLTAMAMATLAMLVNGTGRGGDGRPRKRRQPGGISPAP RRSPADLPGTTRGRSRGSGGE |
| Coding | >Ophio5|1948 ATGAAATCGCTTGGATTCTTAGTGCTCGTTTCTTTAACGCCTCGACTCGTCGCCGCTCTTTGCGAGTGCGGGTTC GCCGTAAAGGGGACCGACGACGGTCATGGACCGTGGCTTTTTACAAACGTGCTCGAGAGCGACTTTACAAAAGGT GTCAAGGTCTCGGAGAACAAAGACTGGGTTCGACAGCAGTTCAACGTCTCGGCAAAGGCTGGTCGCGGCAGATAC GGCAAGTCGTTTAGTTTGGACAACATCTTGTCTCATGATCCAACCGTCAGGTCTCAAGGCGCATCCGCTCTGCAA CTGCGTGTTGGCAGCATGCTCAACAAGGATGCCGTTACGGCGGCAGAAATGGATTCGGCAAGGAATGACTTGCAC TGGGGATCGTATCGCGCCGGCATGAAGCTAACGGCCGTCAATGGCACATGCTCTGCCTTCTTCTGGTACCTCAAC GACACGCAGGAGATTGACATGGAGTTTCTGTCGCACGAGTATGACGCCGACAAGGGCGTGTATCCCATCAACCTG GCGATACAGTCCAAGAAGTCGATGGAAGCTGGCTACGACGCTACGAGGACGGCGACTTACAGACGTGTCAATCTC ACCTTTGACCCGACGGCCGCCTTCCACGAGTATCGGTTCGACTACCTGCCCGGGCGCGTGGCCTTCTACGCCGAT AGCGTTAAGCTGGCCGAAATGGAGGGCGACGAGATGCCGAAAACGTCGGGCCATCTTATCCTCCAGCATTGGAGC AACGGGGATCCAATGTGGTCAGGCGGTCCGCCGGCGCAGGACGCCCTGCTGACGGTGAGCTACGTCAAGGCTTAC TTCAACTCGTCGGACAACAAGGCAAGCTGGGAGGAACGTTGCGGCCAATCTCAGGGCACAGCCATATGCACCATT CCAGATGTCACGGCTGCCAATGCGAGCACGGGAGGCCACTTCTTTACCGACGGTCGGTCACGCAAGGAAGGCGGT GAGGCGGACAGCGGATGTGCTGGCGAGGGGGGTTACGGCTTGACGGCCATGGCCATGGCCACCCTCGCCATGCTC GTGAATGGCACCGGGCGAGGCGGTGACGGACGACCGAGGAAACGACGCCAGCCGGGCGGCATCTCTCCGGCCCCC CGCCGAAGCCCCGCCGATCTACCGGGGACCACGCGGGGGCGGAGCAGGGGCAGTGGCGGGGAA |
| Transcript | >Ophio5|1948 ATGAAATCGCTTGGATTCTTAGTGCTCGTTTCTTTAACGCCTCGACTCGTCGCCGCTCTTTGCGAGTGCGGGTTC GCCGTAAAGGGGACCGACGACGGTCATGGACCGTGGCTTTTTACAAACGTGCTCGAGAGCGACTTTACAAAAGGT GTCAAGGTCTCGGAGAACAAAGACTGGGTTCGACAGCAGTTCAACGTCTCGGCAAAGGCTGGTCGCGGCAGATAC GGCAAGTCGTTTAGTTTGGACAACATCTTGTCTCATGATCCAACCGTCAGGTCTCAAGGCGCATCCGCTCTGCAA CTGCGTGTTGGCAGCATGCTCAACAAGGATGCCGTTACGGCGGCAGAAATGGATTCGGCAAGGAATGACTTGCAC TGGGGATCGTATCGCGCCGGCATGAAGCTAACGGCCGTCAATGGCACATGCTCTGCCTTCTTCTGGTACCTCAAC GACACGCAGGAGATTGACATGGAGTTTCTGTCGCACGAGTATGACGCCGACAAGGGCGTGTATCCCATCAACCTG GCGATACAGTCCAAGAAGTCGATGGAAGCTGGCTACGACGCTACGAGGACGGCGACTTACAGACGTGTCAATCTC ACCTTTGACCCGACGGCCGCCTTCCACGAGTATCGGTTCGACTACCTGCCCGGGCGCGTGGCCTTCTACGCCGAT AGCGTTAAGCTGGCCGAAATGGAGGGCGACGAGATGCCGAAAACGTCGGGCCATCTTATCCTCCAGCATTGGAGC AACGGGGATCCAATGTGGTCAGGCGGTCCGCCGGCGCAGGACGCCCTGCTGACGGTGAGCTACGTCAAGGCTTAC TTCAACTCGTCGGACAACAAGGCAAGCTGGGAGGAACGTTGCGGCCAATCTCAGGGCACAGCCATATGCACCATT CCAGATGTCACGGCTGCCAATGCGAGCACGGGAGGCCACTTCTTTACCGACGGTCGGTCACGCAAGGAAGGCGGT GAGGCGGACAGCGGATGTGCTGGCGAGGGGGGTTACGGCTTGACGGCCATGGCCATGGCCACCCTCGCCATGCTC GTGAATGGCACCGGGCGAGGCGGTGACGGACGACCGAGGAAACGACGCCAGCCGGGCGGCATCTCTCCGGCCCCC CGCCGAAGCCCCGCCGATCTACCGGGGACCACGCGGGGGCGGAGCAGGGGCAGTGGCGGGGAATGA |
| Gene | >Ophio5|1948 ATGAAATCGCTTGGATTCTTAGTGCTCGTTTCTTTAACGCCTCGACTCGTCGCCGCTCTTTGCGAGTGCGGGTTC GCCGTAAAGGGGACCGACGACGGTCATGGACCGTGGCTTTTTACAAACGTGCTCGAGAGCGACTTTACAAAAGGT GTCAAGGTCTCGGAGAACAAAGACTGGGTTCGACAGCAGTTCAACGTCTCGGCAAAGGCTGGTCGCGGCAGATAC GGCAAGTCGTTTAGTTTGGACAACATCTTGTCTCATGATCCAACCGTCAGGTCTCAAGGCGCATCCGCTCTGCAA CTGCGTGTTGGCAGCATGCTCAACAAGGATGCCGTTACGGCGGCAGAAATGGATTCGGCAAGGAATGACTTGCAC TGGGGATCGTATCGCGCCGGCATGAAGCTAACGGCCGTCAATGGCACATGCTCTGCCTTCTTCTGGGTGCGTGTG CATCTCGTGGCCTCGGCACCGTGAAATCTAAACTCGTGGCGCTCCTAGTACCTCAACGACACGCAGGAGATTGAC ATGGAGTTTCTGTCGCACGAGTATGACGCCGACAAGGGCGTGTATCCCATCAACCTGGCGATACAGTCCAAGAAG TCGATGGAAGCTGGCTACGACGCTACGAGGACGGCGACTTACAGACGTGTCAATCTCACCTTTGACCCGACGGCC GCCTTCCACGAGTATCGGTTCGACTACCTGCCCGGGCGCGTGGCCTTCTACGCCGATAGCGTTAAGCTGGCCGAA ATGGAGGGCGACGAGATGCCGAAAACGTCGGGCCATCTTATCCTCCAGCATTGGAGCAACGGGGATCCAATGTGG TCAGGCGGTCCGCCGGCGCAGGACGCCCTGCTGACGGTGAGCTACGTCAAGGCTTACTTCAACTCGTCGGACAAC AAGGCAAGCTGGGAGGAACGTTGCGGCCAATCTCAGGGCACAGCCATATGCACCATTCCAGATGTCACGGCTGCC AATGCGAGCACGGGAGGCCACTTCTTTACCGACGGTCGGTCACGCAAGGAAGGCGGTGAGGCGGACAGCGGATGT GCTGGCGAGGGGGGTTACGGCTTGACGGCCATGGCCATGGCCACCCTCGCCATGCTCGTGAATGGCACCGGGCGA GGCGGTTTGTGAGGGATGATGGAGTGAGAGAGGGTGCTCATGACAGCGGAAGGCGCCCAAGTTGATACCAATAAT GTTTAAGCATTTCCGCCACCTCGCGGCGACCTGTCTTAACCGGATTGTGGCGCTTTCAGGTGACGGACGACCGAG GAAACGGTAAGTCTGATGACGCGCATGCTTCATCCTCTTGCGTCTTGAGACTGATAAAGTGGCCCCGTGCGAGAC GCCAGCCGGGCGGCATCTCTCCGGCCCCCCGCCGAAGCCCCGCCGATCTACCGGGGACCACGCGGGGGCGGAGCA GGGGCAGTGGCGGGGAATGA |