Protein ID | Ophio5|1938 |
Gene name | |
Location | scaffold_176:5208..7157 |
Strand | - |
Gene length (bp) | 1949 |
Transcript length (bp) | 1767 |
Coding sequence length (bp) | 1764 |
Protein length (aa) | 588 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00735 | Septin | Septin | 2.9E-10 | 294 | 369 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q9QZR6|SEPT9_RAT | Septin-9 OS=Rattus norvegicus GN=Sept9 PE=1 SV=1 | 171 | 366 | 2.0E-10 |
sp|Q80UG5|SEPT9_MOUSE | Septin-9 OS=Mus musculus GN=Sept9 PE=1 SV=1 | 171 | 357 | 5.0E-09 |
sp|Q9UHD8|SEPT9_HUMAN | Septin-9 OS=Homo sapiens GN=SEPT9 PE=1 SV=2 | 171 | 357 | 1.0E-08 |
sp|P39827|CDC10_CANAL | Cell division control protein 10 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CDC10 PE=2 SV=1 | 171 | 371 | 2.0E-08 |
sp|Q5BKN4|SEP2A_XENTR | Septin-2A OS=Xenopus tropicalis GN=sept2-A PE=2 SV=1 | 173 | 369 | 7.0E-07 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q9QZR6|SEPT9_RAT | Septin-9 OS=Rattus norvegicus GN=Sept9 PE=1 SV=1 | 171 | 366 | 2.0E-10 |
sp|Q80UG5|SEPT9_MOUSE | Septin-9 OS=Mus musculus GN=Sept9 PE=1 SV=1 | 171 | 357 | 5.0E-09 |
sp|Q9UHD8|SEPT9_HUMAN | Septin-9 OS=Homo sapiens GN=SEPT9 PE=1 SV=2 | 171 | 357 | 1.0E-08 |
sp|P39827|CDC10_CANAL | Cell division control protein 10 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CDC10 PE=2 SV=1 | 171 | 371 | 2.0E-08 |
sp|Q5BKN4|SEP2A_XENTR | Septin-2A OS=Xenopus tropicalis GN=sept2-A PE=2 SV=1 | 173 | 369 | 7.0E-07 |
sp|Q5ZMH1|SEPT2_CHICK | Septin-2 OS=Gallus gallus GN=SEPT2 PE=2 SV=1 | 173 | 369 | 1.0E-06 |
sp|Q5RA66|SEPT2_PONAB | Septin-2 OS=Pongo abelii GN=SEPT2 PE=2 SV=1 | 173 | 369 | 2.0E-06 |
sp|Q15019|SEPT2_HUMAN | Septin-2 OS=Homo sapiens GN=SEPT2 PE=1 SV=1 | 173 | 369 | 3.0E-06 |
sp|Q2NKY7|SEPT2_BOVIN | Septin-2 OS=Bos taurus GN=SEPT2 PE=2 SV=1 | 173 | 369 | 3.0E-06 |
sp|P42209|SEPT1_MOUSE | Septin-1 OS=Mus musculus GN=Sept1 PE=1 SV=2 | 173 | 369 | 3.0E-06 |
sp|Q91Y81|SEPT2_RAT | Septin-2 OS=Rattus norvegicus GN=Sept2 PE=1 SV=1 | 173 | 369 | 3.0E-06 |
sp|P39826|CDC3_CANAX | Cell division control protein 3 OS=Candida albicans GN=CDC3 PE=3 SV=1 | 294 | 370 | 6.0E-06 |
sp|P42208|SEPT2_MOUSE | Septin-2 OS=Mus musculus GN=Sept2 PE=1 SV=2 | 173 | 369 | 9.0E-06 |
GO Term | Description | Terminal node |
---|---|---|
GO:0005525 | GTP binding | Yes |
GO:0035639 | purine ribonucleoside triphosphate binding | No |
GO:0017076 | purine nucleotide binding | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0032561 | guanyl ribonucleotide binding | No |
GO:0043168 | anion binding | No |
GO:0043167 | ion binding | No |
GO:0003674 | molecular_function | No |
GO:0032553 | ribonucleotide binding | No |
GO:0036094 | small molecule binding | No |
GO:0032555 | purine ribonucleotide binding | No |
GO:0000166 | nucleotide binding | No |
GO:1901265 | nucleoside phosphate binding | No |
GO:0019001 | guanyl nucleotide binding | No |
GO:0097367 | carbohydrate derivative binding | No |
GO:0005488 | binding | No |
GO:0097159 | organic cyclic compound binding | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Mitochondrion | Peroxisomal targeting signal | 0.1576 | 0.3836 | 0.076 | 0.02 | 0.7655 | 0.2168 | 0.3256 | 0.1587 | 0.3265 | 0.4997 |
Orthofinder run ID | 4 |
Orthogroup | 6157 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|1938 MRPVSISADSETARPDALPSHAPVAPLSCFITTEANLDSAAACPDVDCPPKHRSHQSPCGHSCSFSDHSVHRRRT ISQASSDMAFEISPAPVSAGVVGSRSVASGLSSLGISPVSSSSGEPSGDSAKPAGLASGDLNATMAEGSFHQLVM PSLMVPRRRSFTDVGKSLGYLKLLVSGPAGIGKTSLIRSLGQNCQHIVYLDPISSFSTERVTEIFASTRSYPWWR AETRTIRRTKFVADELLERNICFADCPPFKSDTGQVTGYVESQLMQLCQKPIGDVDLFHLLSGGAGSIVHAVLYM LPNTGPRPEDIKHIKMLQEMTNVIPLLARADELTDEQAVFSKRRLLSLLARENLDLFSFTGTDSAQQESSIYAVS CTAQSDCTASEQEMHMSFEHIHPQAPTDLADLVDHIFSQDGSSWLRHSAAVKSVHWRRRQLEMASRSALTLRNIT YSGTMTSPCLPFSEAPHRERIVFSSWAESLRQSLTAERICRSCSNLPSEVQRIELAMTQTGKSLNVARVQKSVER TSKVHQDPLGLLKLASQINHGGRLSLELLTSLGGFGVAAWLVRPELARQCGMGLSTSWGLATS |
Coding | >Ophio5|1938 ATGAGGCCAGTCTCCATCTCGGCTGACTCGGAAACCGCCCGCCCCGACGCCTTGCCGTCTCATGCGCCGGTTGCG CCCCTAAGCTGCTTCATTACTACCGAGGCCAACCTCGACTCAGCCGCTGCCTGTCCCGATGTCGACTGTCCTCCA AAGCACCGCTCTCATCAGTCACCATGCGGTCACAGCTGTTCCTTCTCCGACCATTCCGTACACCGCCGGCGAACA ATCTCCCAGGCCTCCTCCGACATGGCGTTCGAAATTTCCCCGGCGCCCGTCTCGGCCGGCGTTGTCGGCTCCCGA TCAGTCGCAAGTGGTCTATCGTCCCTCGGAATCTCTCCGGTCAGCTCTTCCTCTGGCGAGCCCAGCGGAGACTCT GCCAAACCCGCCGGACTCGCTTCCGGTGACCTTAATGCCACCATGGCCGAAGGCTCCTTTCACCAACTGGTAATG CCGAGCCTAATGGTTCCTCGACGTCGCTCTTTCACGGACGTTGGCAAGTCTTTGGGATACCTCAAACTGCTCGTC TCAGGTCCAGCCGGCATTGGCAAGACATCGCTCATTCGCTCCCTTGGTCAAAACTGTCAGCATATCGTGTACCTT GATCCCATATCTTCCTTCTCTACCGAGAGAGTCACGGAAATCTTTGCCAGCACCAGATCATATCCCTGGTGGAGA GCAGAGACTCGAACAATCAGGCGGACAAAGTTTGTGGCCGATGAGCTTCTAGAAAGAAATATTTGCTTCGCAGAT TGTCCACCATTTAAAAGTGATACTGGGCAGGTGACTGGGTACGTCGAGTCGCAGCTAATGCAACTCTGCCAGAAG CCCATCGGGGATGTCGACCTTTTTCATCTGCTAAGTGGCGGAGCTGGGTCCATCGTCCATGCTGTTCTGTACATG CTACCCAACACCGGCCCACGCCCGGAAGACATAAAACACATCAAGATGCTGCAAGAGATGACAAATGTGATCCCA TTACTTGCGAGAGCAGATGAGCTTACAGACGAGCAAGCGGTGTTCTCAAAGAGGAGACTCCTCAGCCTTCTGGCA AGAGAGAATCTAGACCTGTTTTCCTTTACCGGTACCGACTCAGCGCAGCAGGAATCGAGTATATATGCAGTCTCT TGTACTGCCCAATCTGACTGCACTGCATCGGAGCAAGAAATGCACATGAGTTTCGAGCACATCCACCCGCAAGCA CCTACAGACCTTGCCGACCTCGTCGACCACATTTTCTCACAAGACGGAAGCTCCTGGCTTCGGCATTCTGCCGCC GTCAAGTCTGTGCATTGGCGGCGGCGACAGCTCGAGATGGCATCACGCTCCGCTTTAACACTCCGCAATATCACA TATAGTGGTACCATGACGTCTCCTTGTCTTCCATTCTCTGAAGCACCGCACCGGGAGCGAATAGTCTTCTCCAGC TGGGCAGAGAGCTTACGTCAGAGCCTCACTGCGGAAAGAATCTGCAGATCGTGTTCAAACCTACCATCGGAGGTG CAGAGAATCGAGCTGGCCATGACCCAGACTGGGAAGTCATTGAACGTGGCCCGCGTTCAAAAAAGCGTGGAGCGA ACAAGCAAAGTCCATCAAGATCCGCTGGGGCTCTTGAAGCTGGCCAGTCAGATCAATCACGGCGGGAGGCTTTCC CTCGAACTTCTGACCAGCCTTGGGGGGTTTGGCGTTGCTGCGTGGCTTGTGCGGCCCGAGCTGGCTCGCCAATGT GGTATGGGCTTGTCGACGTCCTGGGGTCTGGCAACGTCT |
Transcript | >Ophio5|1938 ATGAGGCCAGTCTCCATCTCGGCTGACTCGGAAACCGCCCGCCCCGACGCCTTGCCGTCTCATGCGCCGGTTGCG CCCCTAAGCTGCTTCATTACTACCGAGGCCAACCTCGACTCAGCCGCTGCCTGTCCCGATGTCGACTGTCCTCCA AAGCACCGCTCTCATCAGTCACCATGCGGTCACAGCTGTTCCTTCTCCGACCATTCCGTACACCGCCGGCGAACA ATCTCCCAGGCCTCCTCCGACATGGCGTTCGAAATTTCCCCGGCGCCCGTCTCGGCCGGCGTTGTCGGCTCCCGA TCAGTCGCAAGTGGTCTATCGTCCCTCGGAATCTCTCCGGTCAGCTCTTCCTCTGGCGAGCCCAGCGGAGACTCT GCCAAACCCGCCGGACTCGCTTCCGGTGACCTTAATGCCACCATGGCCGAAGGCTCCTTTCACCAACTGGTAATG CCGAGCCTAATGGTTCCTCGACGTCGCTCTTTCACGGACGTTGGCAAGTCTTTGGGATACCTCAAACTGCTCGTC TCAGGTCCAGCCGGCATTGGCAAGACATCGCTCATTCGCTCCCTTGGTCAAAACTGTCAGCATATCGTGTACCTT GATCCCATATCTTCCTTCTCTACCGAGAGAGTCACGGAAATCTTTGCCAGCACCAGATCATATCCCTGGTGGAGA GCAGAGACTCGAACAATCAGGCGGACAAAGTTTGTGGCCGATGAGCTTCTAGAAAGAAATATTTGCTTCGCAGAT TGTCCACCATTTAAAAGTGATACTGGGCAGGTGACTGGGTACGTCGAGTCGCAGCTAATGCAACTCTGCCAGAAG CCCATCGGGGATGTCGACCTTTTTCATCTGCTAAGTGGCGGAGCTGGGTCCATCGTCCATGCTGTTCTGTACATG CTACCCAACACCGGCCCACGCCCGGAAGACATAAAACACATCAAGATGCTGCAAGAGATGACAAATGTGATCCCA TTACTTGCGAGAGCAGATGAGCTTACAGACGAGCAAGCGGTGTTCTCAAAGAGGAGACTCCTCAGCCTTCTGGCA AGAGAGAATCTAGACCTGTTTTCCTTTACCGGTACCGACTCAGCGCAGCAGGAATCGAGTATATATGCAGTCTCT TGTACTGCCCAATCTGACTGCACTGCATCGGAGCAAGAAATGCACATGAGTTTCGAGCACATCCACCCGCAAGCA CCTACAGACCTTGCCGACCTCGTCGACCACATTTTCTCACAAGACGGAAGCTCCTGGCTTCGGCATTCTGCCGCC GTCAAGTCTGTGCATTGGCGGCGGCGACAGCTCGAGATGGCATCACGCTCCGCTTTAACACTCCGCAATATCACA TATAGTGGTACCATGACGTCTCCTTGTCTTCCATTCTCTGAAGCACCGCACCGGGAGCGAATAGTCTTCTCCAGC TGGGCAGAGAGCTTACGTCAGAGCCTCACTGCGGAAAGAATCTGCAGATCGTGTTCAAACCTACCATCGGAGGTG CAGAGAATCGAGCTGGCCATGACCCAGACTGGGAAGTCATTGAACGTGGCCCGCGTTCAAAAAAGCGTGGAGCGA ACAAGCAAAGTCCATCAAGATCCGCTGGGGCTCTTGAAGCTGGCCAGTCAGATCAATCACGGCGGGAGGCTTTCC CTCGAACTTCTGACCAGCCTTGGGGGGTTTGGCGTTGCTGCGTGGCTTGTGCGGCCCGAGCTGGCTCGCCAATGT GGTATGGGCTTGTCGACGTCCTGGGGTCTGGCAACGTCTTGA |
Gene | >Ophio5|1938 ATGAGGCCAGTCTCCATCTCGGCTGACTCGGAAACCGCCCGCCCCGACGCCTTGCCGTCTCATGCGCCGGTTGCG CCCCTAAGCTGCTTCATTACTACCGAGGCCAACCTCGACTCAGCCGCTGCCTGTCCCGATGTCGACTGTCCTCCA AAGCACCGCTCTCATCAGTCACCATGCGGTCACAGCTGTTCCTTCTCCGACCATTCCGTACACCGCCGGCGAACA ATCTCCCAGGCCTCCTCCGACATGGCGTTCGAAATTTCCCCGGCGCCCGTCTCGGCCGGCGTTGTCGGCTCCCGA TCAGTCGCAAGTGGTCTATCGTCCCTCGGAATCTCTCCGGTCAGCTCTTCCTCTGGCGAGCCCAGCGGAGACTCT GCCAAACCCGCCGGACTCGCTTCCGGTGACCTTAATGCCACCATGGCCGAAGGCTCCTTTCACCAACTGGTAATG CCGAGCCTAATGGTTCCTCGACGTCGCTCTTTCACGGACGTTGGCAAGTCTTTGGGATACCTCAAACTGCTCGTC TCAGGTCCAGCCGGTATCGTGGAGTCACCTCCTCTCCATTGCCGTGGGCACTTCTGCTGATTCGTCCAAAGGCAT TGGCAAGACATCGCTCATTCGCTCCCTTGGTCAAAACTGTCAGCATATCGTGTACCTTGATCCCATATCTTCCTT CTCTACCGAGAGAGTCACGGAAATCTTTGCCAGCACCAGATCATATCCCTGGTGGAGAGCAGAGACTCGAACAAT CAGGCGGACAAAGTTTGTGGCCGATGAGCTTCTAGAAAGAAATATTTGCTTCGCAGATTGTCCACCATTTAAAAG TGATACTGGGGTATTTTATTCCTCGAAGAAAGCTCGTTGACCATCCAGCTAACATGCTTTGGTCATAAAGCAGGT GACTGGGTACGTCGAGTCGCAGCTAATGCAACTCTGCCAGAAGCCCATCGGGGATGTCGACCTTTTTCATCTGCT AAGTGGCGGAGCTGGGTCCATCGTCCATGCTGTTCTGTACATGCTACCCAACACCGGTAAGTGTAGCACGCCGAC GTAGGTAGACACCTTTGAGTCTCAGCAGGGCTGACACAGGTTCAGGCCCACGCCCGGAAGACATAAAACACATCA AGATGCTGCAAGAGATGACAAATGTGATCCCATTACTTGCGAGAGCAGATGAGCTTACAGACGAGCAAGCGGTGT TCTCAAAGAGGAGACTCCTCAGCCTTCTGGCAAGAGAGAATCTAGACCTGTTTTCCTTTACCGGTACCGACTCAG CGCAGCAGGAATCGAGTATATATGCAGTCTCTTGTACTGCCCAATCTGACTGCACTGCATCGGAGCAAGAAATGC ACATGAGTTTCGAGCACATCCACCCGCAAGCACCTACAGACCTTGCCGACCTCGTCGACCACATTTTCTCACAAG ACGGAAGCTCCTGGCTTCGGCATTCTGCCGCCGTCAAGTCTGTGCATTGGCGGCGGCGACAGCTCGAGATGGCAT CACGCTCCGCTTTAACACTCCGCAATATCACATATAGTGGTACCATGACGTCTCCTTGTCTTCCATTCTCTGAAG CACCGCACCGGGAGCGAATAGTCTTCTCCAGCTGGGCAGAGAGCTTACGTCAGAGCCTCACTGCGGAAAGAATCT GCAGATCGTGTTCAAACCTACCATCGGAGGTGCAGAGAATCGAGCTGGCCATGACCCAGACTGGGAAGTCATTGA ACGTGGCCCGCGTTCAAAAAAGCGTGGAGCGAACAAGCAAAGTCCATCAAGATCCGCTGGGGCTCTTGAAGCTGG CCAGTCAGATCAATCACGGCGGGAGGCTTTCCCTCGAACTTCTGACCAGCCTTGGGGGGTTTGGCGTTGCTGCGT GGCTTGTGCGGCCCGAGCTGGCTCGCCAATGTGGTATGGGCTTGTCGACGTCCTGGGGTCTGGCAACGTCTTGA |