Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1936
Gene name
Locationscaffold_176:616..3189
Strand+
Gene length (bp)2573
Transcript length (bp)1971
Coding sequence length (bp)1968
Protein length (aa) 656

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04928 PAP_central Poly(A) polymerase central domain 4.1E-109 8 356
PF04926 PAP_RNA-bind Poly(A) polymerase predicted RNA binding domain 2.6E-62 358 534
PF01909 NTP_transf_2 Nucleotidyltransferase domain 1.8E-08 81 166

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q10295|PAP_SCHPO Poly(A) polymerase pla1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pla1 PE=1 SV=1 7 551 0.0E+00
sp|Q9UW26|PAPA_CANAL Poly(A) polymerase PAPa OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PAPA PE=3 SV=1 5 547 6.0E-165
sp|P29468|PAP_YEAST Poly(A) polymerase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PAP1 PE=1 SV=1 1 529 3.0E-164
sp|O42617|PAP_CANAL Poly(A) polymerase PAPalpha OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PAPALPHA PE=3 SV=1 5 557 1.0E-158
sp|Q9BWT3|PAPOG_HUMAN Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2 7 469 2.0E-119
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Swissprot ID Swissprot Description Start End E-value
sp|Q10295|PAP_SCHPO Poly(A) polymerase pla1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pla1 PE=1 SV=1 7 551 0.0E+00
sp|Q9UW26|PAPA_CANAL Poly(A) polymerase PAPa OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PAPA PE=3 SV=1 5 547 6.0E-165
sp|P29468|PAP_YEAST Poly(A) polymerase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PAP1 PE=1 SV=1 1 529 3.0E-164
sp|O42617|PAP_CANAL Poly(A) polymerase PAPalpha OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PAPALPHA PE=3 SV=1 5 557 1.0E-158
sp|Q9BWT3|PAPOG_HUMAN Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2 7 469 2.0E-119
sp|Q6PCL9|PAPOG_MOUSE Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1 7 469 7.0E-119
sp|Q54J73|PAP_DICDI Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1 6 539 3.0E-116
sp|Q9WVP6|PAPOB_MOUSE Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2 2 425 3.0E-111
sp|Q9NRJ5|PAPOB_HUMAN Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB PE=2 SV=1 7 409 2.0E-110
sp|Q61183|PAPOA_MOUSE Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4 2 425 4.0E-109
sp|P51003|PAPOA_HUMAN Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4 2 425 5.0E-109
sp|P25500|PAPOA_BOVIN Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3 2 425 6.0E-109
sp|P51004|PAPO1_XENLA Poly(A) polymerase alpha-A (Fragment) OS=Xenopus laevis GN=papola-a PE=2 SV=1 5 414 7.0E-106
sp|Q8VYW1|PAPS4_ARATH Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana GN=PAPS4 PE=1 SV=1 7 623 1.0E-101
sp|O82312|PAPS2_ARATH Nuclear poly(A) polymerase 2 OS=Arabidopsis thaliana GN=PAPS2 PE=1 SV=2 7 551 3.0E-101
sp|P51006|PAPO3_XENLA Poly(A) polymerase type 3 (Fragment) OS=Xenopus laevis PE=2 SV=1 3 366 1.0E-98
sp|Q9LMT2|PAPS1_ARATH Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana GN=PAPS1 PE=1 SV=1 5 408 7.0E-97
sp|Q56XM9|PAPS3_ARATH Nuclear poly(A) polymerase 3 OS=Arabidopsis thaliana GN=PAPS3 PE=1 SV=1 16 399 8.0E-50
sp|P51005|PAPO2_XENLA Poly(A) polymerase alpha-B OS=Xenopus laevis GN=papola-b PE=2 SV=1 243 414 3.0E-41
sp|Q51D88|PAP_ENTHI Poly(A) polymerase OS=Entamoeba histolytica GN=16.t00038 PE=2 SV=1 85 414 7.0E-36
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GO

GO Term Description Terminal node
GO:0043631 RNA polyadenylation Yes
GO:0003723 RNA binding Yes
GO:0004652 polynucleotide adenylyltransferase activity Yes
GO:0016779 nucleotidyltransferase activity Yes
GO:0070566 adenylyltransferase activity No
GO:1901360 organic cyclic compound metabolic process No
GO:0008150 biological_process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0044238 primary metabolic process No
GO:0090304 nucleic acid metabolic process No
GO:0003676 nucleic acid binding No
GO:0046483 heterocycle metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0008152 metabolic process No
GO:0044237 cellular metabolic process No
GO:0003674 molecular_function No
GO:0016740 transferase activity No
GO:0071704 organic substance metabolic process No
GO:0005488 binding No
GO:0043170 macromolecule metabolic process No
GO:0009987 cellular process No
GO:1901363 heterocyclic compound binding No
GO:0016070 RNA metabolic process No
GO:0097159 organic cyclic compound binding No
GO:0016772 transferase activity, transferring phosphorus-containing groups No
GO:0006807 nitrogen compound metabolic process No
GO:0003824 catalytic activity No
GO:0034641 cellular nitrogen compound metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 17 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 255.50 115.19 395.81
CcL In ants, during behavior modification 154.43 75.26 233.60
CcD In ants, recently dead 94.08 49.90 138.26

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.048833 yes
SC16a CcD 0.000286 yes
CcL CcD 0.037825 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1936
MPGEQVYGVTPPISVALPTDMEKRSSDALIEELRRQKTFENPSDTQKRYKVLESLQSICDEFVKRVAKQKEPKNE
MLIRNARGKVFTYGSFRLGVFGPGSDIDTLIVAPKYVSRDDYFKFFPDMLVEMAPKGAITGLTIVTEAFVPIIKF
EYSGISIDLIFSRIVQKQLSASFQDLKDSALLRGLDEAELRSLNGTRVTDEILNLVPEQSTFKLALRAIKLWAQR
RAVYANIMGFPGGVAWAMLVARVCQLYPKAATSVIVNKFFLVIGQWRWPHPVLLKPIESGPLPVRVWNPKIYKGD
SFHLMPVITPAYPSMCATFNITRSSMMIIDMELKRGLDLTENIMVGKSPWSDLFVKHTFFTADYRYYISVTSASK
DKEAHKIWSGYVESKVRMLVQKLELHPSIALAHAFNRGYDRRHRCKDDKEIAQVQEGCLDFMFRPDEVNNEAVEK
TGNNLEAASLTEVFTTTHYIGIQLEKKAKSLDLSFQVDEFKALCTQWKKFQEELSALVSIGVQHVRNVNLPDDVF
EAGEKRPQKKGAKRPPVAKKRGPTEENPPPPAKRQQTAFLTPLQVRQERPVKHFNASGPLSPLGRDWLKPAAHTS
MTRMPQPYTFPMNPSLAQMTAVNNSSYIYFAANRSVNCHWPKVPCRLVEMSRSLCL
Coding >Ophio5|1936
ATGCCCGGCGAACAGGTTTACGGTGTCACGCCACCCATTTCTGTGGCTCTTCCTACGGATATGGAGAAGCGGTCC
AGCGACGCCCTCATCGAGGAGCTGCGCCGGCAGAAGACGTTTGAGAATCCTTCTGATACCCAAAAGAGATACAAG
GTCCTCGAATCTCTTCAGTCCATTTGCGACGAATTCGTCAAACGCGTAGCCAAACAAAAAGAGCCCAAAAACGAG
ATGCTCATTAGGAACGCTCGAGGCAAAGTCTTCACCTACGGGAGTTTCCGGCTTGGCGTCTTCGGTCCCGGTTCC
GATATTGACACGCTCATCGTCGCTCCCAAATATGTGTCACGCGACGACTATTTCAAGTTCTTCCCTGACATGCTA
GTCGAAATGGCCCCCAAGGGCGCTATCACGGGCCTCACTATCGTCACCGAAGCCTTCGTCCCCATCATCAAATTC
GAATATTCCGGCATAAGTATTGACTTGATCTTCTCTCGCATCGTACAAAAACAGCTGTCGGCCAGCTTCCAAGAC
CTCAAAGATTCCGCTCTTCTCCGCGGCTTGGACGAGGCCGAACTACGATCTCTCAACGGCACTCGCGTGACGGAT
GAAATTCTTAATCTCGTTCCCGAACAAAGTACCTTCAAGCTTGCATTGCGCGCCATCAAGCTTTGGGCTCAGCGT
CGGGCCGTTTACGCCAACATTATGGGCTTTCCCGGTGGCGTTGCCTGGGCTATGCTGGTTGCTCGGGTCTGCCAG
CTGTACCCCAAGGCAGCTACGTCTGTTATTGTGAATAAGTTCTTTCTCGTCATTGGTCAGTGGCGATGGCCCCAT
CCTGTTCTTCTCAAGCCTATTGAGAGCGGGCCCCTTCCAGTTCGCGTCTGGAATCCAAAGATTTACAAAGGTGAT
TCTTTTCATCTCATGCCAGTCATCACACCTGCATATCCTTCAATGTGTGCAACGTTCAACATCACGCGCTCTTCT
ATGATGATCATCGATATGGAGCTCAAGCGCGGCTTGGACCTGACGGAGAACATTATGGTGGGCAAGAGCCCATGG
AGCGATCTATTCGTCAAGCATACGTTCTTCACGGCGGACTACAGATACTACATATCCGTCACGTCCGCCAGCAAG
GACAAAGAAGCTCACAAGATATGGTCGGGCTACGTCGAGTCCAAAGTCCGAATGCTAGTTCAGAAGCTTGAGCTG
CATCCGTCTATAGCGCTGGCACACGCCTTCAATAGAGGCTACGATAGGCGTCATCGTTGCAAGGATGACAAGGAG
ATTGCGCAAGTGCAGGAAGGTTGCCTTGACTTTATGTTCCGCCCCGACGAAGTTAATAATGAAGCGGTTGAGAAA
ACTGGGAACAACTTGGAAGCAGCCTCCCTCACCGAGGTCTTTACTACCACTCATTACATCGGGATCCAGCTAGAA
AAAAAAGCGAAATCGCTCGATCTCTCCTTTCAAGTGGACGAATTCAAAGCCCTTTGCACGCAGTGGAAAAAATTT
CAAGAAGAGTTGAGTGCCTTGGTCTCCATCGGCGTTCAGCACGTGCGGAACGTCAATCTTCCCGACGACGTCTTC
GAAGCGGGCGAAAAGAGACCTCAGAAGAAGGGTGCCAAGCGGCCACCCGTCGCCAAGAAGCGTGGCCCGACAGAG
GAGAATCCCCCGCCGCCGGCGAAGAGACAGCAGACGGCGTTTTTGACGCCTCTTCAAGTTCGACAGGAACGGCCG
GTGAAGCATTTCAATGCTTCCGGCCCGTTGTCTCCTCTTGGTCGTGACTGGCTGAAACCAGCAGCACACACGTCA
ATGACACGAATGCCCCAACCTTATACATTCCCCATGAATCCCAGTCTCGCCCAAATGACGGCTGTGAATAACTCG
AGCTACATATACTTTGCGGCCAATAGAAGCGTAAATTGCCACTGGCCCAAGGTTCCGTGCCGACTTGTCGAGATG
AGCCGCTCCCTATGCCTG
Transcript >Ophio5|1936
ATGCCCGGCGAACAGGTTTACGGTGTCACGCCACCCATTTCTGTGGCTCTTCCTACGGATATGGAGAAGCGGTCC
AGCGACGCCCTCATCGAGGAGCTGCGCCGGCAGAAGACGTTTGAGAATCCTTCTGATACCCAAAAGAGATACAAG
GTCCTCGAATCTCTTCAGTCCATTTGCGACGAATTCGTCAAACGCGTAGCCAAACAAAAAGAGCCCAAAAACGAG
ATGCTCATTAGGAACGCTCGAGGCAAAGTCTTCACCTACGGGAGTTTCCGGCTTGGCGTCTTCGGTCCCGGTTCC
GATATTGACACGCTCATCGTCGCTCCCAAATATGTGTCACGCGACGACTATTTCAAGTTCTTCCCTGACATGCTA
GTCGAAATGGCCCCCAAGGGCGCTATCACGGGCCTCACTATCGTCACCGAAGCCTTCGTCCCCATCATCAAATTC
GAATATTCCGGCATAAGTATTGACTTGATCTTCTCTCGCATCGTACAAAAACAGCTGTCGGCCAGCTTCCAAGAC
CTCAAAGATTCCGCTCTTCTCCGCGGCTTGGACGAGGCCGAACTACGATCTCTCAACGGCACTCGCGTGACGGAT
GAAATTCTTAATCTCGTTCCCGAACAAAGTACCTTCAAGCTTGCATTGCGCGCCATCAAGCTTTGGGCTCAGCGT
CGGGCCGTTTACGCCAACATTATGGGCTTTCCCGGTGGCGTTGCCTGGGCTATGCTGGTTGCTCGGGTCTGCCAG
CTGTACCCCAAGGCAGCTACGTCTGTTATTGTGAATAAGTTCTTTCTCGTCATTGGTCAGTGGCGATGGCCCCAT
CCTGTTCTTCTCAAGCCTATTGAGAGCGGGCCCCTTCCAGTTCGCGTCTGGAATCCAAAGATTTACAAAGGTGAT
TCTTTTCATCTCATGCCAGTCATCACACCTGCATATCCTTCAATGTGTGCAACGTTCAACATCACGCGCTCTTCT
ATGATGATCATCGATATGGAGCTCAAGCGCGGCTTGGACCTGACGGAGAACATTATGGTGGGCAAGAGCCCATGG
AGCGATCTATTCGTCAAGCATACGTTCTTCACGGCGGACTACAGATACTACATATCCGTCACGTCCGCCAGCAAG
GACAAAGAAGCTCACAAGATATGGTCGGGCTACGTCGAGTCCAAAGTCCGAATGCTAGTTCAGAAGCTTGAGCTG
CATCCGTCTATAGCGCTGGCACACGCCTTCAATAGAGGCTACGATAGGCGTCATCGTTGCAAGGATGACAAGGAG
ATTGCGCAAGTGCAGGAAGGTTGCCTTGACTTTATGTTCCGCCCCGACGAAGTTAATAATGAAGCGGTTGAGAAA
ACTGGGAACAACTTGGAAGCAGCCTCCCTCACCGAGGTCTTTACTACCACTCATTACATCGGGATCCAGCTAGAA
AAAAAAGCGAAATCGCTCGATCTCTCCTTTCAAGTGGACGAATTCAAAGCCCTTTGCACGCAGTGGAAAAAATTT
CAAGAAGAGTTGAGTGCCTTGGTCTCCATCGGCGTTCAGCACGTGCGGAACGTCAATCTTCCCGACGACGTCTTC
GAAGCGGGCGAAAAGAGACCTCAGAAGAAGGGTGCCAAGCGGCCACCCGTCGCCAAGAAGCGTGGCCCGACAGAG
GAGAATCCCCCGCCGCCGGCGAAGAGACAGCAGACGGCGTTTTTGACGCCTCTTCAAGTTCGACAGGAACGGCCG
GTGAAGCATTTCAATGCTTCCGGCCCGTTGTCTCCTCTTGGTCGTGACTGGCTGAAACCAGCAGCACACACGTCA
ATGACACGAATGCCCCAACCTTATACATTCCCCATGAATCCCAGTCTCGCCCAAATGACGGCTGTGAATAACTCG
AGCTACATATACTTTGCGGCCAATAGAAGCGTAAATTGCCACTGGCCCAAGGTTCCGTGCCGACTTGTCGAGATG
AGCCGCTCCCTATGCCTGTAG
Gene >Ophio5|1936
ATGCCCGGCGAACAGGTTTACGGTGTCACGCCACCCATTTCTGTGGCTCTTCCTACGGATATGGAGAAGCGGTCC
AGCGACGCCCTCATCGAGGAGCTGCGCCGGCAGAAGACGTTTGAGAATCCTTCTGATACCCAAAAGAGGTGATGC
CTATGCTTCAACTTGTTGCATATCTTGGGCTCACAAGTCTCGCAGATACAAGGTCCTCGAATCTCTTCAGTCCAT
TTGCGACGAATTCGTCAAACGCGTAGCCAAACAAAAAGAGCCCAAAAACGAGATGCTCATTAGGAACGCTCGAGG
CAAAGTCTTCACCTACGGGAGTTTCCGGCTTGGCGTCTTCGGTCCCGGTTCCGATATTGACACGCTCATCGTCGC
TCCCAAATATGTGTCACGCGACGACTATTTCAAGTTCTTCCCTGACATGCTAGTCGAAATGGCCCCCAAGGGCGC
TATCACGGGCCTCACTATCGTCACCGAAGCCTTCGTCCCCATCATCAAATTCGAATATTCCGGCATAAGTATTGA
CTTGATCTTCTCTCGCATCGTACAAAAACAGCTGTCGGCCAGCTTCCAAGACCTCAAAGATTCCGCTCTTCTCCG
CGGCTTGGACGAGGCCGAACTACGATCTCTCAACGGCACTCGCGTGACGGATGAAATTCTTAATCTCGTTCCCGA
ACAAAGTACCTTCAAGCTTGCATTGCGCGCCATCAAGCTTTGGGCTCAGCGTCGGGCCGTTTACGCCAACATTAT
GGGCTTTCCCGGTGGCGTTGCCTGGGCTATGCTGGTTGCTCGGGTCTGCCAGCTGTACCCCAAGGCAGCTACGTC
TGTTATTGTGAATAAGTTCTTTCTCGTCATTGGTCAGTGGCGATGGCCCCATCCTGTTCTTCTCAAGCCTATTGA
GAGCGGGCCCCTTCCAGTTCGCGTCTGGAATCCAAAGGTTAGTCGTCCTTTCCCTTTACTCGAGGCTGTCGATTA
ACGCGCCGCCAGATTTACAAAGGTGATTCTTTTCATCTCATGCCAGTCATCACACCTGCATATCCTTCAATGTGT
GCAACGTTCAACATCACGCGCTCTTCTATGATGATCATCGATATGGAGCTCAAGCGCGGCTTGGACCTGACGGAG
AACATTATGGTGGGCAAGAGCCCATGGAGCGATCTATTCGTCAAGCATACGTTCTTCACGGCGGACTACAGATAC
TACATATCCGTCACGTCCGCCAGCAAGGACAAAGAAGCTCACAAGATATGGTCGGGCTACGTCGAGTCCAAAGTC
CGAATGCTAGTTCAGAAGCTTGAGCTGCATCCGTCTATAGCGCTGGCACACGCCTTCAATAGAGGCTACGATAGG
CGTCATCGTTGCAAGGATGACAAGGAGATTGCGCAAGTGCAGGAAGGTTGCCTTGACTTTATGTTCCGCCCCGAC
GAAGTTAATAATGAAGCGGTTGAGAAAACTGGGAACAACTTGGAAGCAGCCTCCCTCACCGAGGTCTTTACTACC
ACTCATTACATCGGGATCCAGCTAGAAAAAAGTGAGCCGTTCTGGAATCGGTCGAGGGTTCTCCGTCGGAAAACA
TCACTGACTCTGGTGATAACAGAAGCGAAATCGCTCGATCTCTCCTTTCAAGTGGACGAATTCAAAGCCCTTTGC
ACGCAGTGGAAAAAATTTCAAGAAGAGTTGAGTGCCTTGGTCTCCATCGGCGTTCAGCACGTGCGGAAGTAAGTC
GCGATCGATCCCATTTCGGAGGCAAAGAGCGATGGCTAATGGCCGACGCAGCGTCAATCTTCCCGACGACGTCTT
CGAAGCGGGCGAAAAGAGACCTCAGAAGAAGGGTGCCAAGCGGCCACCCGTCGCCAAGAAGCGTGGCCCGACAGA
GGTGAGCGGCCATTTTGTATCCACGCCCATGGTCATGTCGTCGGCGCGCTCTCAGTGAGCCAGGGCGGTGGCTTT
GGCGAGCTCGTCGACCTCACCGAACCACTACTGACAGTTCATTAGGAGAATCCCCCGCCGCCGGCGAAGAGACAG
CAGACGTCGGTGGTAGCTGCCGGCTAAGCAGCACTGTCGGATCTGACTTGGCCTAGGGCGTTTTGTGACCCGACT
TTCCCGGCGTTCGCCTTCGCTCTTGACGAGTGACGCCTCTTCAAGGCTCGACCCCATCGGAGCCCCTTTGATCTG
CGTTACCCCCTTACTGACATGCAAAGTTGACGCAGTTCGACAGGAACGGCCGGTGAAGCATTTCAATGCTTCCGG
CCCGTTGTCTCCTCTTGGTCGTGACTGGCTGAAACCAGCAGCACACACGTCAATGACACGAATGGTGAGCACCCT
TGGTGACCAACTCTGCGAAGCGCGGCGCTTCGGGCGGCGCCAGTCTGAATTAGGCCATGAGCCTGGTCACGGTTG
ACGTTGTCTCGCAGCCCCAACCTTATACATTCCCCATGAATCCCAGTCTCGCCCAAATGACGGCTGTGAATAACT
CGAGCTACATATACTTTGCGGCCAATAGAAGCGTAAATTGCCACTGGCCCAAGGTTCCGTGCCGACTTGTCGAGA
TGAGCCGCTCCCTATGCCTGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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