© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|1936 |
| Gene name | |
| Location | scaffold_176:616..3189 |
| Strand | + |
| Gene length (bp) | 2573 |
| Transcript length (bp) | 1971 |
| Coding sequence length (bp) | 1968 |
| Protein length (aa) | 656 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04928 | PAP_central | Poly(A) polymerase central domain | 4.1E-109 | 8 | 356 |
| PF04926 | PAP_RNA-bind | Poly(A) polymerase predicted RNA binding domain | 2.6E-62 | 358 | 534 |
| PF01909 | NTP_transf_2 | Nucleotidyltransferase domain | 1.8E-08 | 81 | 166 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10295|PAP_SCHPO | Poly(A) polymerase pla1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pla1 PE=1 SV=1 | 7 | 551 | 0.0E+00 |
| sp|Q9UW26|PAPA_CANAL | Poly(A) polymerase PAPa OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PAPA PE=3 SV=1 | 5 | 547 | 6.0E-165 |
| sp|P29468|PAP_YEAST | Poly(A) polymerase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PAP1 PE=1 SV=1 | 1 | 529 | 3.0E-164 |
| sp|O42617|PAP_CANAL | Poly(A) polymerase PAPalpha OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PAPALPHA PE=3 SV=1 | 5 | 557 | 1.0E-158 |
| sp|Q9BWT3|PAPOG_HUMAN | Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2 | 7 | 469 | 2.0E-119 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10295|PAP_SCHPO | Poly(A) polymerase pla1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pla1 PE=1 SV=1 | 7 | 551 | 0.0E+00 |
| sp|Q9UW26|PAPA_CANAL | Poly(A) polymerase PAPa OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PAPA PE=3 SV=1 | 5 | 547 | 6.0E-165 |
| sp|P29468|PAP_YEAST | Poly(A) polymerase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PAP1 PE=1 SV=1 | 1 | 529 | 3.0E-164 |
| sp|O42617|PAP_CANAL | Poly(A) polymerase PAPalpha OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PAPALPHA PE=3 SV=1 | 5 | 557 | 1.0E-158 |
| sp|Q9BWT3|PAPOG_HUMAN | Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2 | 7 | 469 | 2.0E-119 |
| sp|Q6PCL9|PAPOG_MOUSE | Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1 | 7 | 469 | 7.0E-119 |
| sp|Q54J73|PAP_DICDI | Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1 | 6 | 539 | 3.0E-116 |
| sp|Q9WVP6|PAPOB_MOUSE | Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2 | 2 | 425 | 3.0E-111 |
| sp|Q9NRJ5|PAPOB_HUMAN | Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB PE=2 SV=1 | 7 | 409 | 2.0E-110 |
| sp|Q61183|PAPOA_MOUSE | Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4 | 2 | 425 | 4.0E-109 |
| sp|P51003|PAPOA_HUMAN | Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4 | 2 | 425 | 5.0E-109 |
| sp|P25500|PAPOA_BOVIN | Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3 | 2 | 425 | 6.0E-109 |
| sp|P51004|PAPO1_XENLA | Poly(A) polymerase alpha-A (Fragment) OS=Xenopus laevis GN=papola-a PE=2 SV=1 | 5 | 414 | 7.0E-106 |
| sp|Q8VYW1|PAPS4_ARATH | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana GN=PAPS4 PE=1 SV=1 | 7 | 623 | 1.0E-101 |
| sp|O82312|PAPS2_ARATH | Nuclear poly(A) polymerase 2 OS=Arabidopsis thaliana GN=PAPS2 PE=1 SV=2 | 7 | 551 | 3.0E-101 |
| sp|P51006|PAPO3_XENLA | Poly(A) polymerase type 3 (Fragment) OS=Xenopus laevis PE=2 SV=1 | 3 | 366 | 1.0E-98 |
| sp|Q9LMT2|PAPS1_ARATH | Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana GN=PAPS1 PE=1 SV=1 | 5 | 408 | 7.0E-97 |
| sp|Q56XM9|PAPS3_ARATH | Nuclear poly(A) polymerase 3 OS=Arabidopsis thaliana GN=PAPS3 PE=1 SV=1 | 16 | 399 | 8.0E-50 |
| sp|P51005|PAPO2_XENLA | Poly(A) polymerase alpha-B OS=Xenopus laevis GN=papola-b PE=2 SV=1 | 243 | 414 | 3.0E-41 |
| sp|Q51D88|PAP_ENTHI | Poly(A) polymerase OS=Entamoeba histolytica GN=16.t00038 PE=2 SV=1 | 85 | 414 | 7.0E-36 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0043631 | RNA polyadenylation | Yes |
| GO:0003723 | RNA binding | Yes |
| GO:0004652 | polynucleotide adenylyltransferase activity | Yes |
| GO:0016779 | nucleotidyltransferase activity | Yes |
| GO:0070566 | adenylyltransferase activity | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0016740 | transferase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0005488 | binding | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1936 MPGEQVYGVTPPISVALPTDMEKRSSDALIEELRRQKTFENPSDTQKRYKVLESLQSICDEFVKRVAKQKEPKNE MLIRNARGKVFTYGSFRLGVFGPGSDIDTLIVAPKYVSRDDYFKFFPDMLVEMAPKGAITGLTIVTEAFVPIIKF EYSGISIDLIFSRIVQKQLSASFQDLKDSALLRGLDEAELRSLNGTRVTDEILNLVPEQSTFKLALRAIKLWAQR RAVYANIMGFPGGVAWAMLVARVCQLYPKAATSVIVNKFFLVIGQWRWPHPVLLKPIESGPLPVRVWNPKIYKGD SFHLMPVITPAYPSMCATFNITRSSMMIIDMELKRGLDLTENIMVGKSPWSDLFVKHTFFTADYRYYISVTSASK DKEAHKIWSGYVESKVRMLVQKLELHPSIALAHAFNRGYDRRHRCKDDKEIAQVQEGCLDFMFRPDEVNNEAVEK TGNNLEAASLTEVFTTTHYIGIQLEKKAKSLDLSFQVDEFKALCTQWKKFQEELSALVSIGVQHVRNVNLPDDVF EAGEKRPQKKGAKRPPVAKKRGPTEENPPPPAKRQQTAFLTPLQVRQERPVKHFNASGPLSPLGRDWLKPAAHTS MTRMPQPYTFPMNPSLAQMTAVNNSSYIYFAANRSVNCHWPKVPCRLVEMSRSLCL |
| Coding | >Ophio5|1936 ATGCCCGGCGAACAGGTTTACGGTGTCACGCCACCCATTTCTGTGGCTCTTCCTACGGATATGGAGAAGCGGTCC AGCGACGCCCTCATCGAGGAGCTGCGCCGGCAGAAGACGTTTGAGAATCCTTCTGATACCCAAAAGAGATACAAG GTCCTCGAATCTCTTCAGTCCATTTGCGACGAATTCGTCAAACGCGTAGCCAAACAAAAAGAGCCCAAAAACGAG ATGCTCATTAGGAACGCTCGAGGCAAAGTCTTCACCTACGGGAGTTTCCGGCTTGGCGTCTTCGGTCCCGGTTCC GATATTGACACGCTCATCGTCGCTCCCAAATATGTGTCACGCGACGACTATTTCAAGTTCTTCCCTGACATGCTA GTCGAAATGGCCCCCAAGGGCGCTATCACGGGCCTCACTATCGTCACCGAAGCCTTCGTCCCCATCATCAAATTC GAATATTCCGGCATAAGTATTGACTTGATCTTCTCTCGCATCGTACAAAAACAGCTGTCGGCCAGCTTCCAAGAC CTCAAAGATTCCGCTCTTCTCCGCGGCTTGGACGAGGCCGAACTACGATCTCTCAACGGCACTCGCGTGACGGAT GAAATTCTTAATCTCGTTCCCGAACAAAGTACCTTCAAGCTTGCATTGCGCGCCATCAAGCTTTGGGCTCAGCGT CGGGCCGTTTACGCCAACATTATGGGCTTTCCCGGTGGCGTTGCCTGGGCTATGCTGGTTGCTCGGGTCTGCCAG CTGTACCCCAAGGCAGCTACGTCTGTTATTGTGAATAAGTTCTTTCTCGTCATTGGTCAGTGGCGATGGCCCCAT CCTGTTCTTCTCAAGCCTATTGAGAGCGGGCCCCTTCCAGTTCGCGTCTGGAATCCAAAGATTTACAAAGGTGAT TCTTTTCATCTCATGCCAGTCATCACACCTGCATATCCTTCAATGTGTGCAACGTTCAACATCACGCGCTCTTCT ATGATGATCATCGATATGGAGCTCAAGCGCGGCTTGGACCTGACGGAGAACATTATGGTGGGCAAGAGCCCATGG AGCGATCTATTCGTCAAGCATACGTTCTTCACGGCGGACTACAGATACTACATATCCGTCACGTCCGCCAGCAAG GACAAAGAAGCTCACAAGATATGGTCGGGCTACGTCGAGTCCAAAGTCCGAATGCTAGTTCAGAAGCTTGAGCTG CATCCGTCTATAGCGCTGGCACACGCCTTCAATAGAGGCTACGATAGGCGTCATCGTTGCAAGGATGACAAGGAG ATTGCGCAAGTGCAGGAAGGTTGCCTTGACTTTATGTTCCGCCCCGACGAAGTTAATAATGAAGCGGTTGAGAAA ACTGGGAACAACTTGGAAGCAGCCTCCCTCACCGAGGTCTTTACTACCACTCATTACATCGGGATCCAGCTAGAA AAAAAAGCGAAATCGCTCGATCTCTCCTTTCAAGTGGACGAATTCAAAGCCCTTTGCACGCAGTGGAAAAAATTT CAAGAAGAGTTGAGTGCCTTGGTCTCCATCGGCGTTCAGCACGTGCGGAACGTCAATCTTCCCGACGACGTCTTC GAAGCGGGCGAAAAGAGACCTCAGAAGAAGGGTGCCAAGCGGCCACCCGTCGCCAAGAAGCGTGGCCCGACAGAG GAGAATCCCCCGCCGCCGGCGAAGAGACAGCAGACGGCGTTTTTGACGCCTCTTCAAGTTCGACAGGAACGGCCG GTGAAGCATTTCAATGCTTCCGGCCCGTTGTCTCCTCTTGGTCGTGACTGGCTGAAACCAGCAGCACACACGTCA ATGACACGAATGCCCCAACCTTATACATTCCCCATGAATCCCAGTCTCGCCCAAATGACGGCTGTGAATAACTCG AGCTACATATACTTTGCGGCCAATAGAAGCGTAAATTGCCACTGGCCCAAGGTTCCGTGCCGACTTGTCGAGATG AGCCGCTCCCTATGCCTG |
| Transcript | >Ophio5|1936 ATGCCCGGCGAACAGGTTTACGGTGTCACGCCACCCATTTCTGTGGCTCTTCCTACGGATATGGAGAAGCGGTCC AGCGACGCCCTCATCGAGGAGCTGCGCCGGCAGAAGACGTTTGAGAATCCTTCTGATACCCAAAAGAGATACAAG GTCCTCGAATCTCTTCAGTCCATTTGCGACGAATTCGTCAAACGCGTAGCCAAACAAAAAGAGCCCAAAAACGAG ATGCTCATTAGGAACGCTCGAGGCAAAGTCTTCACCTACGGGAGTTTCCGGCTTGGCGTCTTCGGTCCCGGTTCC GATATTGACACGCTCATCGTCGCTCCCAAATATGTGTCACGCGACGACTATTTCAAGTTCTTCCCTGACATGCTA GTCGAAATGGCCCCCAAGGGCGCTATCACGGGCCTCACTATCGTCACCGAAGCCTTCGTCCCCATCATCAAATTC GAATATTCCGGCATAAGTATTGACTTGATCTTCTCTCGCATCGTACAAAAACAGCTGTCGGCCAGCTTCCAAGAC CTCAAAGATTCCGCTCTTCTCCGCGGCTTGGACGAGGCCGAACTACGATCTCTCAACGGCACTCGCGTGACGGAT GAAATTCTTAATCTCGTTCCCGAACAAAGTACCTTCAAGCTTGCATTGCGCGCCATCAAGCTTTGGGCTCAGCGT CGGGCCGTTTACGCCAACATTATGGGCTTTCCCGGTGGCGTTGCCTGGGCTATGCTGGTTGCTCGGGTCTGCCAG CTGTACCCCAAGGCAGCTACGTCTGTTATTGTGAATAAGTTCTTTCTCGTCATTGGTCAGTGGCGATGGCCCCAT CCTGTTCTTCTCAAGCCTATTGAGAGCGGGCCCCTTCCAGTTCGCGTCTGGAATCCAAAGATTTACAAAGGTGAT TCTTTTCATCTCATGCCAGTCATCACACCTGCATATCCTTCAATGTGTGCAACGTTCAACATCACGCGCTCTTCT ATGATGATCATCGATATGGAGCTCAAGCGCGGCTTGGACCTGACGGAGAACATTATGGTGGGCAAGAGCCCATGG AGCGATCTATTCGTCAAGCATACGTTCTTCACGGCGGACTACAGATACTACATATCCGTCACGTCCGCCAGCAAG GACAAAGAAGCTCACAAGATATGGTCGGGCTACGTCGAGTCCAAAGTCCGAATGCTAGTTCAGAAGCTTGAGCTG CATCCGTCTATAGCGCTGGCACACGCCTTCAATAGAGGCTACGATAGGCGTCATCGTTGCAAGGATGACAAGGAG ATTGCGCAAGTGCAGGAAGGTTGCCTTGACTTTATGTTCCGCCCCGACGAAGTTAATAATGAAGCGGTTGAGAAA ACTGGGAACAACTTGGAAGCAGCCTCCCTCACCGAGGTCTTTACTACCACTCATTACATCGGGATCCAGCTAGAA AAAAAAGCGAAATCGCTCGATCTCTCCTTTCAAGTGGACGAATTCAAAGCCCTTTGCACGCAGTGGAAAAAATTT CAAGAAGAGTTGAGTGCCTTGGTCTCCATCGGCGTTCAGCACGTGCGGAACGTCAATCTTCCCGACGACGTCTTC GAAGCGGGCGAAAAGAGACCTCAGAAGAAGGGTGCCAAGCGGCCACCCGTCGCCAAGAAGCGTGGCCCGACAGAG GAGAATCCCCCGCCGCCGGCGAAGAGACAGCAGACGGCGTTTTTGACGCCTCTTCAAGTTCGACAGGAACGGCCG GTGAAGCATTTCAATGCTTCCGGCCCGTTGTCTCCTCTTGGTCGTGACTGGCTGAAACCAGCAGCACACACGTCA ATGACACGAATGCCCCAACCTTATACATTCCCCATGAATCCCAGTCTCGCCCAAATGACGGCTGTGAATAACTCG AGCTACATATACTTTGCGGCCAATAGAAGCGTAAATTGCCACTGGCCCAAGGTTCCGTGCCGACTTGTCGAGATG AGCCGCTCCCTATGCCTGTAG |
| Gene | >Ophio5|1936 ATGCCCGGCGAACAGGTTTACGGTGTCACGCCACCCATTTCTGTGGCTCTTCCTACGGATATGGAGAAGCGGTCC AGCGACGCCCTCATCGAGGAGCTGCGCCGGCAGAAGACGTTTGAGAATCCTTCTGATACCCAAAAGAGGTGATGC CTATGCTTCAACTTGTTGCATATCTTGGGCTCACAAGTCTCGCAGATACAAGGTCCTCGAATCTCTTCAGTCCAT TTGCGACGAATTCGTCAAACGCGTAGCCAAACAAAAAGAGCCCAAAAACGAGATGCTCATTAGGAACGCTCGAGG CAAAGTCTTCACCTACGGGAGTTTCCGGCTTGGCGTCTTCGGTCCCGGTTCCGATATTGACACGCTCATCGTCGC TCCCAAATATGTGTCACGCGACGACTATTTCAAGTTCTTCCCTGACATGCTAGTCGAAATGGCCCCCAAGGGCGC TATCACGGGCCTCACTATCGTCACCGAAGCCTTCGTCCCCATCATCAAATTCGAATATTCCGGCATAAGTATTGA CTTGATCTTCTCTCGCATCGTACAAAAACAGCTGTCGGCCAGCTTCCAAGACCTCAAAGATTCCGCTCTTCTCCG CGGCTTGGACGAGGCCGAACTACGATCTCTCAACGGCACTCGCGTGACGGATGAAATTCTTAATCTCGTTCCCGA ACAAAGTACCTTCAAGCTTGCATTGCGCGCCATCAAGCTTTGGGCTCAGCGTCGGGCCGTTTACGCCAACATTAT GGGCTTTCCCGGTGGCGTTGCCTGGGCTATGCTGGTTGCTCGGGTCTGCCAGCTGTACCCCAAGGCAGCTACGTC TGTTATTGTGAATAAGTTCTTTCTCGTCATTGGTCAGTGGCGATGGCCCCATCCTGTTCTTCTCAAGCCTATTGA GAGCGGGCCCCTTCCAGTTCGCGTCTGGAATCCAAAGGTTAGTCGTCCTTTCCCTTTACTCGAGGCTGTCGATTA ACGCGCCGCCAGATTTACAAAGGTGATTCTTTTCATCTCATGCCAGTCATCACACCTGCATATCCTTCAATGTGT GCAACGTTCAACATCACGCGCTCTTCTATGATGATCATCGATATGGAGCTCAAGCGCGGCTTGGACCTGACGGAG AACATTATGGTGGGCAAGAGCCCATGGAGCGATCTATTCGTCAAGCATACGTTCTTCACGGCGGACTACAGATAC TACATATCCGTCACGTCCGCCAGCAAGGACAAAGAAGCTCACAAGATATGGTCGGGCTACGTCGAGTCCAAAGTC CGAATGCTAGTTCAGAAGCTTGAGCTGCATCCGTCTATAGCGCTGGCACACGCCTTCAATAGAGGCTACGATAGG CGTCATCGTTGCAAGGATGACAAGGAGATTGCGCAAGTGCAGGAAGGTTGCCTTGACTTTATGTTCCGCCCCGAC GAAGTTAATAATGAAGCGGTTGAGAAAACTGGGAACAACTTGGAAGCAGCCTCCCTCACCGAGGTCTTTACTACC ACTCATTACATCGGGATCCAGCTAGAAAAAAGTGAGCCGTTCTGGAATCGGTCGAGGGTTCTCCGTCGGAAAACA TCACTGACTCTGGTGATAACAGAAGCGAAATCGCTCGATCTCTCCTTTCAAGTGGACGAATTCAAAGCCCTTTGC ACGCAGTGGAAAAAATTTCAAGAAGAGTTGAGTGCCTTGGTCTCCATCGGCGTTCAGCACGTGCGGAAGTAAGTC GCGATCGATCCCATTTCGGAGGCAAAGAGCGATGGCTAATGGCCGACGCAGCGTCAATCTTCCCGACGACGTCTT CGAAGCGGGCGAAAAGAGACCTCAGAAGAAGGGTGCCAAGCGGCCACCCGTCGCCAAGAAGCGTGGCCCGACAGA GGTGAGCGGCCATTTTGTATCCACGCCCATGGTCATGTCGTCGGCGCGCTCTCAGTGAGCCAGGGCGGTGGCTTT GGCGAGCTCGTCGACCTCACCGAACCACTACTGACAGTTCATTAGGAGAATCCCCCGCCGCCGGCGAAGAGACAG CAGACGTCGGTGGTAGCTGCCGGCTAAGCAGCACTGTCGGATCTGACTTGGCCTAGGGCGTTTTGTGACCCGACT TTCCCGGCGTTCGCCTTCGCTCTTGACGAGTGACGCCTCTTCAAGGCTCGACCCCATCGGAGCCCCTTTGATCTG CGTTACCCCCTTACTGACATGCAAAGTTGACGCAGTTCGACAGGAACGGCCGGTGAAGCATTTCAATGCTTCCGG CCCGTTGTCTCCTCTTGGTCGTGACTGGCTGAAACCAGCAGCACACACGTCAATGACACGAATGGTGAGCACCCT TGGTGACCAACTCTGCGAAGCGCGGCGCTTCGGGCGGCGCCAGTCTGAATTAGGCCATGAGCCTGGTCACGGTTG ACGTTGTCTCGCAGCCCCAACCTTATACATTCCCCATGAATCCCAGTCTCGCCCAAATGACGGCTGTGAATAACT CGAGCTACATATACTTTGCGGCCAATAGAAGCGTAAATTGCCACTGGCCCAAGGTTCCGTGCCGACTTGTCGAGA TGAGCCGCTCCCTATGCCTGTAG |