Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1924
Gene name
Locationscaffold_1746:78..711
Strand-
Gene length (bp)633
Transcript length (bp)420
Coding sequence length (bp)417
Protein length (aa) 139

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03311 Cornichon Cornichon protein 1.4E-49 6 127

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P53173|ERV14_YEAST ER-derived vesicles protein ERV14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV14 PE=1 SV=3 6 138 3.0E-55
sp|P38312|ERV15_YEAST ER-derived vesicles protein ERV15 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV15 PE=1 SV=1 2 138 3.0E-39
sp|O14038|YEY5_SCHPO Uncharacterized protein C2C4.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2C4.05 PE=3 SV=1 5 116 2.0E-34
sp|Q9P6K6|ERV14_SCHPO ER-derived vesicles protein erv14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erv14 PE=3 SV=2 1 137 6.0E-34
sp|Q3T126|CNIH4_BOVIN Protein cornichon homolog 4 OS=Bos taurus GN=CNIH4 PE=2 SV=1 5 136 3.0E-30
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Swissprot ID Swissprot Description Start End E-value
sp|P53173|ERV14_YEAST ER-derived vesicles protein ERV14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV14 PE=1 SV=3 6 138 3.0E-55
sp|P38312|ERV15_YEAST ER-derived vesicles protein ERV15 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV15 PE=1 SV=1 2 138 3.0E-39
sp|O14038|YEY5_SCHPO Uncharacterized protein C2C4.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2C4.05 PE=3 SV=1 5 116 2.0E-34
sp|Q9P6K6|ERV14_SCHPO ER-derived vesicles protein erv14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erv14 PE=3 SV=2 1 137 6.0E-34
sp|Q3T126|CNIH4_BOVIN Protein cornichon homolog 4 OS=Bos taurus GN=CNIH4 PE=2 SV=1 5 136 3.0E-30
sp|Q6P3N5|CNIH4_XENTR Protein cornichon homolog 4 OS=Xenopus tropicalis GN=cnih4 PE=2 SV=1 5 136 4.0E-30
sp|Q5R9M4|CNIH4_PONAB Protein cornichon homolog 4 OS=Pongo abelii GN=CNIH4 PE=2 SV=1 5 136 6.0E-29
sp|Q9CX13|CNIH4_MOUSE Protein cornichon homolog 4 OS=Mus musculus GN=Cnih4 PE=2 SV=1 5 136 6.0E-29
sp|Q9P003|CNIH4_HUMAN Protein cornichon homolog 4 OS=Homo sapiens GN=CNIH4 PE=1 SV=1 5 136 6.0E-29
sp|P49858|CNI_DROME Protein cornichon OS=Drosophila melanogaster GN=cni PE=1 SV=1 6 134 2.0E-22
sp|Q5RDB5|CNIH1_PONAB Protein cornichon homolog 1 OS=Pongo abelii GN=CNIH1 PE=2 SV=1 6 136 3.0E-21
sp|O35372|CNIH1_MOUSE Protein cornichon homolog 1 OS=Mus musculus GN=Cnih1 PE=2 SV=2 6 136 3.0E-21
sp|O95406|CNIH1_HUMAN Protein cornichon homolog 1 OS=Homo sapiens GN=CNIH1 PE=1 SV=1 6 136 3.0E-21
sp|Q5BIN6|CNIH1_BOVIN Protein cornichon homolog 1 OS=Bos taurus GN=CNIH1 PE=2 SV=1 6 136 3.0E-21
sp|Q8GWT5|CNIH3_ARATH Protein cornichon homolog 3 OS=Arabidopsis thaliana GN=At1g62880 PE=2 SV=1 4 136 3.0E-19
sp|Q84W04|CNIH4_ARATH Protein cornichon homolog 4 OS=Arabidopsis thaliana GN=At1g12390 PE=1 SV=1 4 136 3.0E-18
sp|P52159|CNI_DROVI Protein cornichon OS=Drosophila virilis GN=cni PE=3 SV=2 6 134 3.0E-18
sp|Q3EDD7|CNIH2_ARATH Probable protein cornichon homolog 2 OS=Arabidopsis thaliana GN=At1g12340 PE=2 SV=2 24 136 1.0E-17
sp|Q9C7D7|CNIH1_ARATH Protein cornichon homolog 1 OS=Arabidopsis thaliana GN=At3g12180 PE=2 SV=1 19 122 9.0E-17
sp|Q22361|CNI1_CAEEL Protein cornichon homolog 1 OS=Caenorhabditis elegans GN=cni-1 PE=1 SV=2 6 137 1.0E-16
sp|Q5BL21|CNIH2_DANRE Protein cornichon homolog 2 OS=Danio rerio GN=cnih2 PE=2 SV=1 6 134 9.0E-16
sp|Q5BJU5|CNIH2_RAT Protein cornichon homolog 2 OS=Rattus norvegicus GN=Cnih2 PE=1 SV=1 6 134 1.0E-14
sp|O35089|CNIH2_MOUSE Protein cornichon homolog 2 OS=Mus musculus GN=Cnih2 PE=1 SV=2 6 134 1.0E-14
sp|Q6PI25|CNIH2_HUMAN Protein cornichon homolog 2 OS=Homo sapiens GN=CNIH2 PE=1 SV=1 6 134 1.0E-14
sp|Q9SZ74|CNIH5_ARATH Protein cornichon homolog 5 OS=Arabidopsis thaliana GN=At4g12090 PE=2 SV=2 31 136 2.0E-12
sp|Q6ZWS4|CNIH3_MOUSE Protein cornichon homolog 3 OS=Mus musculus GN=Cnih3 PE=2 SV=1 6 136 2.0E-12
sp|Q8TBE1|CNIH3_HUMAN Protein cornichon homolog 3 OS=Homo sapiens GN=CNIH3 PE=2 SV=1 6 136 2.0E-12
sp|D0Q0Y7|CNIH3_RAT Protein cornichon homolog 3 OS=Rattus norvegicus GN=Cnih3 PE=1 SV=1 6 136 2.0E-12
sp|Q68EY2|CNIH2_XENLA Protein cornichon homolog 2 OS=Xenopus laevis GN=cnih2 PE=2 SV=1 6 139 1.0E-11
sp|Q0VFK3|CNIH2_XENTR Protein cornichon homolog 2 OS=Xenopus tropicalis GN=cnih2 PE=2 SV=1 6 139 1.0E-11
sp|Q401C0|CNIH2_CHICK Protein cornichon homolog 2 OS=Gallus gallus GN=CNIH2 PE=1 SV=1 6 134 5.0E-09
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GO

GO Term Description Terminal node
GO:0016192 vesicle-mediated transport Yes
GO:0051234 establishment of localization No
GO:0006810 transport No
GO:0051179 localization No
GO:0008150 biological_process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 18 0.5

Transmembrane Domains

Domain # Start End Length
1 7 29 22
2 59 81 22
3 112 134 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1924
MMSGEAWLYLLAVLINAVNLFLQVFFTIMYSDLECDYINPIELCNRLNAYIVPEAAVQAFLTFLFLINGYWLALV
LNLPLLAWNAKKIIDNTHLLDATEIFRKLNIHKKESFAKLAFHLVMFFFYLYSMIVALIRDESA
Coding >Ophio5|1924
ATGATGTCAGGAGAGGCGTGGCTATATCTTCTGGCCGTGTTAATCAACGCTGTCAACTTGTTTTTGCAGGTGTTC
TTCACGATAATGTATAGCGATTTGGAATGCGACTACATCAATCCAATCGAGCTTTGCAACCGTTTAAACGCTTAC
ATAGTGCCCGAGGCCGCGGTACAGGCATTTCTGACCTTTCTGTTCTTAATCAATGGCTACTGGTTGGCCCTTGTT
CTGAATTTGCCTCTTCTCGCATGGAACGCGAAAAAAATAATAGACAACACCCACTTACTGGATGCTACTGAAATC
TTTCGCAAGCTAAATATTCATAAGAAGGAATCATTTGCTAAACTCGCTTTTCACTTGGTTATGTTCTTCTTTTAC
TTATATAGCATGATTGTAGCCCTTATTCGGGACGAGTCTGCT
Transcript >Ophio5|1924
ATGATGTCAGGAGAGGCGTGGCTATATCTTCTGGCCGTGTTAATCAACGCTGTCAACTTGTTTTTGCAGGTGTTC
TTCACGATAATGTATAGCGATTTGGAATGCGACTACATCAATCCAATCGAGCTTTGCAACCGTTTAAACGCTTAC
ATAGTGCCCGAGGCCGCGGTACAGGCATTTCTGACCTTTCTGTTCTTAATCAATGGCTACTGGTTGGCCCTTGTT
CTGAATTTGCCTCTTCTCGCATGGAACGCGAAAAAAATAATAGACAACACCCACTTACTGGATGCTACTGAAATC
TTTCGCAAGCTAAATATTCATAAGAAGGAATCATTTGCTAAACTCGCTTTTCACTTGGTTATGTTCTTCTTTTAC
TTATATAGCATGATTGTAGCCCTTATTCGGGACGAGTCTGCTTAG
Gene >Ophio5|1924
ATGATGTCAGGAGAGGCGTGGCTATATCTTCTGGCCGTGTTAATCAACGCTGTCAACTTGTTTTTGCAGGTGTTC
TTCACGATAATGTATAGCGATTTGGAATGGTGCGTCGGTATCTTTCGCATCTTTGCTACTGCGTGTTCGATGGAT
TTCGGTGTTCAAACTAAGTTTTCTTAAGACACTATTTCTTCTCATGCTGACTTTCCCTACCCTAGCGACTACATC
AATCCAATCGAGCTTTGCAACCGTTTAAACGCTTACATAGTGCCCGAGGCCGCGGTACAGGCATTTCTGACCTTT
CTGTTCTTAATCAATGGCTACTGGTTGGCCCTTGTTCTGAATTTGCCTCTTCTCGCATGGAACGCGAAAAAGTAA
GTCTGTATTTTGACCTTGGCGAGGGCAGCTTGTTGACGGTCCTTCAAGAATAATAGACAACACCCACTTACTGGA
TGCTACTGAAATCTTTCGCAAGCTAAATATTCATAAGAAGGTGCGCAAGGTTCTTATCCATATAAAAAGCCGGTT
TATAACGAATTTCAGGAATCATTTGCTAAACTCGCTTTTCACTTGGTTATGTTCTTCTTTTACTTATATAGCATG
ATTGTAGCCCTTATTCGGGACGAGTCTGCTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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