© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|1922 |
| Gene name | |
| Location | scaffold_174:34028..34540 |
| Strand | - |
| Gene length (bp) | 512 |
| Transcript length (bp) | 459 |
| Coding sequence length (bp) | 456 |
| Protein length (aa) | 152 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1024 | 0.0823 | 0.9766 | 0.0951 | 0.0845 | 0.0201 | 0.1494 | 0.078 | 0.1508 | 0.0068 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 24 | 0.999703 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 3.61 | 0.0 | 7.49 |
| CcL | In ants, during behavior modification | 0.90 | 0.0 | 2.30 |
| CcD | In ants, recently dead | 0.62 | 0.0 | 2.01 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.142930 | no |
| SC16a | CcD | 0.110129 | no |
| CcL | CcD | 1.000000 | no |
| Orthofinder run ID | 4 |
| Orthogroup | 8319 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps camponoti-rufipedis | Ophun1|4244 |
| Ophiocordyceps kimflemingae | Ophio5|1922 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1922 MLWRSAVAPLFLTVGLLLPSGSKALPTGGSEVSRRWYMPIPTGSGGSPPRGAAGQSSGSNTGTGTIGGLGNPATG GAGTGSHHAPAVGLSVGGNRPALAGGSVAPGPPPTRQHIGEEMHHIFPNRPIRRQPLGFAPSPFWRPWETPTRSG RL |
| Coding | >Ophio5|1922 ATGCTCTGGCGTTCAGCTGTTGCTCCTTTGTTCCTGACCGTCGGCCTGCTCTTGCCGTCTGGTTCCAAGGCTCTG CCCACCGGGGGTAGCGAAGTCTCGCGGCGGTGGTATATGCCGATCCCCACCGGCTCCGGCGGCTCCCCTCCGCGC GGCGCCGCGGGGCAAAGCTCGGGCTCCAACACCGGCACCGGCACCATTGGTGGGCTGGGTAATCCGGCCACCGGT GGCGCAGGCACGGGCAGCCACCATGCTCCCGCCGTCGGTCTGTCCGTCGGCGGCAATAGGCCAGCGTTGGCGGGG GGAAGCGTCGCCCCAGGTCCCCCCCCAACACGACAGCATATAGGCGAAGAAATGCACCACATCTTTCCGAACCGA CCAATCCGACGACAGCCTCTGGGTTTTGCACCCTCGCCTTTCTGGCGGCCTTGGGAGACTCCAACGAGATCGGGC CGACTC |
| Transcript | >Ophio5|1922 ATGCTCTGGCGTTCAGCTGTTGCTCCTTTGTTCCTGACCGTCGGCCTGCTCTTGCCGTCTGGTTCCAAGGCTCTG CCCACCGGGGGTAGCGAAGTCTCGCGGCGGTGGTATATGCCGATCCCCACCGGCTCCGGCGGCTCCCCTCCGCGC GGCGCCGCGGGGCAAAGCTCGGGCTCCAACACCGGCACCGGCACCATTGGTGGGCTGGGTAATCCGGCCACCGGT GGCGCAGGCACGGGCAGCCACCATGCTCCCGCCGTCGGTCTGTCCGTCGGCGGCAATAGGCCAGCGTTGGCGGGG GGAAGCGTCGCCCCAGGTCCCCCCCCAACACGACAGCATATAGGCGAAGAAATGCACCACATCTTTCCGAACCGA CCAATCCGACGACAGCCTCTGGGTTTTGCACCCTCGCCTTTCTGGCGGCCTTGGGAGACTCCAACGAGATCGGGC CGACTCTAA |
| Gene | >Ophio5|1922 ATGCTCTGGCGTTCAGCTGTTGCTCCTTTGTTCCTGACCGTCGGCCTGCTCTTGCCGTCTGGTTCCAAGGCTCTG CCCACCGGGGTAAGTCGGGGCAAGCAAACAAATTTCAAGCGGGCTGCTAACATATAGCAAAGGGTAGCGAAGTCT CGCGGCGGTGGTATATGCCGATCCCCACCGGCTCCGGCGGCTCCCCTCCGCGCGGCGCCGCGGGGCAAAGCTCGG GCTCCAACACCGGCACCGGCACCATTGGTGGGCTGGGTAATCCGGCCACCGGTGGCGCAGGCACGGGCAGCCACC ATGCTCCCGCCGTCGGTCTGTCCGTCGGCGGCAATAGGCCAGCGTTGGCGGGGGGAAGCGTCGCCCCAGGTCCCC CCCCAACACGACAGCATATAGGCGAAGAAATGCACCACATCTTTCCGAACCGACCAATCCGACGACAGCCTCTGG GTTTTGCACCCTCGCCTTTCTGGCGGCCTTGGGAGACTCCAACGAGATCGGGCCGACTCTAA |