Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|192
Gene name
Locationscaffold_103:34663..35062
Strand-
Gene length (bp)399
Transcript length (bp)249
Coding sequence length (bp)246
Protein length (aa) 82

Your browser does not support drawing a protein figure.

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.5

Transmembrane Domains

Domain # Start End Length
1 13 35 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 7.28 0.0 16.91
CcL In ants, during behavior modification 0.62 0.0 2.07
CcD In ants, recently dead 0.55 0.0 2.00

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.275202 no
SC16a CcD 0.264666 no
CcL CcD 1.000000 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|192
MSLFHSLKRLRGSCWLACAQLVSIYSLLWVGRLLVASLIPSPSFLLASAYASRPWSPRPWSPRSRACRSRCAALD
ARSLVRR
Coding >Ophio5|192
ATGAGCCTTTTTCACTCTTTAAAGAGGCTGCGTGGCTCGTGCTGGCTGGCATGTGCTCAACTCGTCTCTATCTAT
TCCTTACTGTGGGTAGGTAGGCTTCTCGTCGCCTCTCTCATCCCATCACCTTCCTTCCTACTGGCGAGTGCCTAC
GCTTCGCGCCCTTGGAGCCCTCGTCCTTGGAGCCCTCGTTCTCGAGCATGCCGAAGCCGATGCGCGGCTCTTGAC
GCTCGTTCGCTCGTCCGCCGA
Transcript >Ophio5|192
ATGAGCCTTTTTCACTCTTTAAAGAGGCTGCGTGGCTCGTGCTGGCTGGCATGTGCTCAACTCGTCTCTATCTAT
TCCTTACTGTGGGTAGGTAGGCTTCTCGTCGCCTCTCTCATCCCATCACCTTCCTTCCTACTGGCGAGTGCCTAC
GCTTCGCGCCCTTGGAGCCCTCGTCCTTGGAGCCCTCGTTCTCGAGCATGCCGAAGCCGATGCGCGGCTCTTGAC
GCTCGTTCGCTCGTCCGCCGATAA
Gene >Ophio5|192
ATGAGGTCATTGCGGAGGGGACGCGACGCGATGAAAATCAGGGAGGAAAATGTGTTTTTTTTTAGAATGACATTT
CCGTCTCCCTAGAGTCGAATCAGCCTTTTTCACTCTTTAAAGAGGCTGCGTGGCTCGTGCTGGCTGGCATGTGCT
CAACTCGTCTCTATCTATTCCTTACTGTGGGTAGGTAGGTAGGTAGGTAGCCGCCAAGTACCCCTACATCCATTA
ATCGATAAGTACCAAGGTAGGCTTCTCGTCGCCTCTCTCATCCCATCACCTTCCTTCCTACTGGCGAGTGCCTAC
GCTTCGCGCCCTTGGAGCCCTCGTCCTTGGAGCCCTCGTTCTCGAGCATGCCGAAGCCGATGCGCGGCTCTTGAC
GCTCGTTCGCTCGTCCGCCGATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail