Fungal Genomics

General Properties

Protein ID	Ophio5|1892
Gene name
Location	scaffold_172:25073..25800
Strand	-
Gene length (bp)	727
Transcript length (bp)	660
Coding sequence length (bp)	657
Protein length (aa)	219

Overview

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PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF08229	SHR3_chaperone	ER membrane protein SH3	9.4E-75	19	218

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp|Q02774|SHR3_YEAST	Secretory component protein SHR3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SHR3 PE=1 SV=2	16	217	5.0E-22

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]

Localizations	Signals	Cytoplasm	Nucleus	Extracellular	Cell membrane	Mitochondrion	Plastid	Endoplasmic reticulum	Lysosome vacuole	Golgi apparatus	Peroxisome
Endoplasmic reticulum	Signal peptide|Transmembrane domain	0.1259	0.2092	0.0849	0.2664	0.185	0.0056	0.754	0.5004	0.3012	0.0078

SignalP

(None)

Transmembrane Domains

Domain #	Start	End	Length
1	20	42	22
2	75	97	22
3	104	126	22
4	164	182	18

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	124.97	67.38	182.57
CcL	In ants, during behavior modification	195.76	106.04	285.48
CcD	In ants, recently dead	158.72	85.70	231.74

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.044536	yes
SC16a	CcD	0.331913	no
CcL	CcD	0.392394	no

Orthologs

Orthofinder run ID	4
Orthogroup	1334
Change Orthofinder run	4: Insect Pathogens

Species	Protein ID
Ophiocordyceps australis 1348a (Ghana)	OphauG2|2534
Ophiocordyceps australis map64 (Brazil)	OphauB2|511
Ophiocordyceps camponoti-floridani	Ophcf2|07267
Ophiocordyceps camponoti-rufipedis	Ophun1|3060
Ophiocordyceps kimflemingae	Ophio5|1892 (this protein)
Ophiocordyceps subramaniannii	Hirsu2|10703

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus Download genbank file of locus (reverse complement) The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5|1892 MAPYVDYSKTTKSKGYRGSGSFATFMIIGPTCFFLGILFASFPYDFPLLWTKEPASDNYYDQLEAHLKFLHRSPP LIGRMLNIVVSVGFLGLFIKLFRPSEANFLFDGASLILYTIGVAVYISNIVKGLRTLSSGLWDSDEFKNSREGRF EGEFILGREDSLKVLAASNTILALVLIGVLVLQAGQWYAEKRDSDDEDNMDKSSGGKAATATAATKKKQ
Coding	>Ophio5|1892 ATGGCGCCCTACGTCGACTATTCGAAGACGACCAAATCAAAGGGCTACCGCGGCTCCGGCTCGTTCGCGACCTTT ATGATTATCGGACCGACGTGCTTCTTCCTCGGAATTCTTTTCGCCTCGTTTCCCTACGACTTTCCCCTGCTCTGG ACCAAGGAGCCGGCCAGCGACAACTACTACGACCAGCTTGAGGCACACCTCAAGTTCCTGCACCGGTCTCCGCCG CTCATCGGGCGGATGCTCAACATCGTCGTCAGCGTAGGCTTCCTGGGCCTCTTCATCAAGCTTTTCCGCCCCAGC GAGGCCAATTTTCTGTTCGACGGCGCGTCTTTGATACTCTACACCATTGGCGTGGCCGTCTACATCTCCAACATT GTCAAGGGCCTGCGCACCCTCAGCTCGGGTCTCTGGGACAGCGACGAATTCAAGAATAGCCGCGAGGGCCGGTTC GAGGGCGAATTCATCCTGGGGCGCGAGGACAGTCTTAAGGTGCTGGCCGCGAGCAACACAATCCTGGCTCTGGTC CTTATCGGCGTCCTCGTTCTTCAAGCCGGGCAATGGTACGCGGAGAAGAGGGATTCGGATGACGAGGATAACATG GACAAGTCCTCCGGCGGCAAAGCGGCGACGGCGACGGCGGCGACGAAGAAGAAGCAG
Transcript	>Ophio5|1892 ATGGCGCCCTACGTCGACTATTCGAAGACGACCAAATCAAAGGGCTACCGCGGCTCCGGCTCGTTCGCGACCTTT ATGATTATCGGACCGACGTGCTTCTTCCTCGGAATTCTTTTCGCCTCGTTTCCCTACGACTTTCCCCTGCTCTGG ACCAAGGAGCCGGCCAGCGACAACTACTACGACCAGCTTGAGGCACACCTCAAGTTCCTGCACCGGTCTCCGCCG CTCATCGGGCGGATGCTCAACATCGTCGTCAGCGTAGGCTTCCTGGGCCTCTTCATCAAGCTTTTCCGCCCCAGC GAGGCCAATTTTCTGTTCGACGGCGCGTCTTTGATACTCTACACCATTGGCGTGGCCGTCTACATCTCCAACATT GTCAAGGGCCTGCGCACCCTCAGCTCGGGTCTCTGGGACAGCGACGAATTCAAGAATAGCCGCGAGGGCCGGTTC GAGGGCGAATTCATCCTGGGGCGCGAGGACAGTCTTAAGGTGCTGGCCGCGAGCAACACAATCCTGGCTCTGGTC CTTATCGGCGTCCTCGTTCTTCAAGCCGGGCAATGGTACGCGGAGAAGAGGGATTCGGATGACGAGGATAACATG GACAAGTCCTCCGGCGGCAAAGCGGCGACGGCGACGGCGGCGACGAAGAAGAAGCAGTGA
Gene	>Ophio5|1892 ATGGCGCCCTACGTCGACTATTCGAAGACGACCAAATCAAAGGGCTACCGCGGCTCCGGCTCGTTCGCGACCTTT ATGATTATCGGACGTGCGTTTTACCTTCCCCATCCCCCCCCGCGTAAGGACTTCGTCGCCGACGACTTTTTTGTC TATAGCGACGTGCTTCTTCCTCGGAATTCTTTTCGCCTCGTTTCCCTACGACTTTCCCCTGCTCTGGACCAAGGA GCCGGCCAGCGACAACTACTACGACCAGCTTGAGGCACACCTCAAGTTCCTGCACCGGTCTCCGCCGCTCATCGG GCGGATGCTCAACATCGTCGTCAGCGTAGGCTTCCTGGGCCTCTTCATCAAGCTTTTCCGCCCCAGCGAGGCCAA TTTTCTGTTCGACGGCGCGTCTTTGATACTCTACACCATTGGCGTGGCCGTCTACATCTCCAACATTGTCAAGGG CCTGCGCACCCTCAGCTCGGGTCTCTGGGACAGCGACGAATTCAAGAATAGCCGCGAGGGCCGGTTCGAGGGCGA ATTCATCCTGGGGCGCGAGGACAGTCTTAAGGTGCTGGCCGCGAGCAACACAATCCTGGCTCTGGTCCTTATCGG CGTCCTCGTTCTTCAAGCCGGGCAATGGTACGCGGAGAAGAGGGATTCGGATGACGAGGATAACATGGACAAGTC CTCCGGCGGCAAAGCGGCGACGGCGACGGCGGCGACGAAGAAGAAGCAGTGA