© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|1892 |
| Gene name | |
| Location | scaffold_172:25073..25800 |
| Strand | - |
| Gene length (bp) | 727 |
| Transcript length (bp) | 660 |
| Coding sequence length (bp) | 657 |
| Protein length (aa) | 219 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08229 | SHR3_chaperone | ER membrane protein SH3 | 9.4E-75 | 19 | 218 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q02774|SHR3_YEAST | Secretory component protein SHR3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SHR3 PE=1 SV=2 | 16 | 217 | 5.0E-22 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 52 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 42 | 22 |
| 2 | 75 | 97 | 22 |
| 3 | 104 | 126 | 22 |
| 4 | 164 | 182 | 18 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1892 MAPYVDYSKTTKSKGYRGSGSFATFMIIGPTCFFLGILFASFPYDFPLLWTKEPASDNYYDQLEAHLKFLHRSPP LIGRMLNIVVSVGFLGLFIKLFRPSEANFLFDGASLILYTIGVAVYISNIVKGLRTLSSGLWDSDEFKNSREGRF EGEFILGREDSLKVLAASNTILALVLIGVLVLQAGQWYAEKRDSDDEDNMDKSSGGKAATATAATKKKQ |
| Coding | >Ophio5|1892 ATGGCGCCCTACGTCGACTATTCGAAGACGACCAAATCAAAGGGCTACCGCGGCTCCGGCTCGTTCGCGACCTTT ATGATTATCGGACCGACGTGCTTCTTCCTCGGAATTCTTTTCGCCTCGTTTCCCTACGACTTTCCCCTGCTCTGG ACCAAGGAGCCGGCCAGCGACAACTACTACGACCAGCTTGAGGCACACCTCAAGTTCCTGCACCGGTCTCCGCCG CTCATCGGGCGGATGCTCAACATCGTCGTCAGCGTAGGCTTCCTGGGCCTCTTCATCAAGCTTTTCCGCCCCAGC GAGGCCAATTTTCTGTTCGACGGCGCGTCTTTGATACTCTACACCATTGGCGTGGCCGTCTACATCTCCAACATT GTCAAGGGCCTGCGCACCCTCAGCTCGGGTCTCTGGGACAGCGACGAATTCAAGAATAGCCGCGAGGGCCGGTTC GAGGGCGAATTCATCCTGGGGCGCGAGGACAGTCTTAAGGTGCTGGCCGCGAGCAACACAATCCTGGCTCTGGTC CTTATCGGCGTCCTCGTTCTTCAAGCCGGGCAATGGTACGCGGAGAAGAGGGATTCGGATGACGAGGATAACATG GACAAGTCCTCCGGCGGCAAAGCGGCGACGGCGACGGCGGCGACGAAGAAGAAGCAG |
| Transcript | >Ophio5|1892 ATGGCGCCCTACGTCGACTATTCGAAGACGACCAAATCAAAGGGCTACCGCGGCTCCGGCTCGTTCGCGACCTTT ATGATTATCGGACCGACGTGCTTCTTCCTCGGAATTCTTTTCGCCTCGTTTCCCTACGACTTTCCCCTGCTCTGG ACCAAGGAGCCGGCCAGCGACAACTACTACGACCAGCTTGAGGCACACCTCAAGTTCCTGCACCGGTCTCCGCCG CTCATCGGGCGGATGCTCAACATCGTCGTCAGCGTAGGCTTCCTGGGCCTCTTCATCAAGCTTTTCCGCCCCAGC GAGGCCAATTTTCTGTTCGACGGCGCGTCTTTGATACTCTACACCATTGGCGTGGCCGTCTACATCTCCAACATT GTCAAGGGCCTGCGCACCCTCAGCTCGGGTCTCTGGGACAGCGACGAATTCAAGAATAGCCGCGAGGGCCGGTTC GAGGGCGAATTCATCCTGGGGCGCGAGGACAGTCTTAAGGTGCTGGCCGCGAGCAACACAATCCTGGCTCTGGTC CTTATCGGCGTCCTCGTTCTTCAAGCCGGGCAATGGTACGCGGAGAAGAGGGATTCGGATGACGAGGATAACATG GACAAGTCCTCCGGCGGCAAAGCGGCGACGGCGACGGCGGCGACGAAGAAGAAGCAGTGA |
| Gene | >Ophio5|1892 ATGGCGCCCTACGTCGACTATTCGAAGACGACCAAATCAAAGGGCTACCGCGGCTCCGGCTCGTTCGCGACCTTT ATGATTATCGGACGTGCGTTTTACCTTCCCCATCCCCCCCCGCGTAAGGACTTCGTCGCCGACGACTTTTTTGTC TATAGCGACGTGCTTCTTCCTCGGAATTCTTTTCGCCTCGTTTCCCTACGACTTTCCCCTGCTCTGGACCAAGGA GCCGGCCAGCGACAACTACTACGACCAGCTTGAGGCACACCTCAAGTTCCTGCACCGGTCTCCGCCGCTCATCGG GCGGATGCTCAACATCGTCGTCAGCGTAGGCTTCCTGGGCCTCTTCATCAAGCTTTTCCGCCCCAGCGAGGCCAA TTTTCTGTTCGACGGCGCGTCTTTGATACTCTACACCATTGGCGTGGCCGTCTACATCTCCAACATTGTCAAGGG CCTGCGCACCCTCAGCTCGGGTCTCTGGGACAGCGACGAATTCAAGAATAGCCGCGAGGGCCGGTTCGAGGGCGA ATTCATCCTGGGGCGCGAGGACAGTCTTAAGGTGCTGGCCGCGAGCAACACAATCCTGGCTCTGGTCCTTATCGG CGTCCTCGTTCTTCAAGCCGGGCAATGGTACGCGGAGAAGAGGGATTCGGATGACGAGGATAACATGGACAAGTC CTCCGGCGGCAAAGCGGCGACGGCGACGGCGGCGACGAAGAAGAAGCAGTGA |