© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|1885 |
| Gene name | |
| Location | scaffold_172:9074..10314 |
| Strand | - |
| Gene length (bp) | 1240 |
| Transcript length (bp) | 1035 |
| Coding sequence length (bp) | 1032 |
| Protein length (aa) | 344 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12505 | DUF3712 | Protein of unknown function (DUF3712) | 7.0E-19 | 119 | 241 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 64 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 33 | 55 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 32.23 | 15.19 | 49.28 |
| CcL | In ants, during behavior modification | 998.57 | 336.34 | 1660.80 |
| CcD | In ants, recently dead | 416.43 | 186.78 | 646.09 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 0.000286 | yes |
| CcL | CcD | 0.004113 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1885 MSSDAKNMISQSENDARIKTSKSRACINHFKRFWWIHLLVAVILIVLIACLIVFVVLPKVVQSKLDAAKLDIQGV AVLQTKANGYLMEINSTITTDGSVHADVEGFKGTLTLADVPDAKPFATLDFPPTTAESLSTVNISQPVQITDAAA FIQFNTLFYQGKSIRVRLHGNTKVKPRGTAREVDVDFTKFLEFNGLERFQGTKVDGTVDIAARPGTPNFRGTAEI PNNSHFTLEIGNATFTNFADDQDLGKLTINNLILYPGINKVDIEAELDQLKVLSIIRKRPYCETGIVPFKLLSTD VVNHGEKLEYFVAALGSANQTVDMDIGRVLSKAVDGFKLSCSRG |
| Coding | >Ophio5|1885 ATGTCTTCCGACGCAAAGAATATGATTTCACAGTCAGAAAACGACGCCCGGATAAAGACCAGCAAGAGCCGCGCT TGCATCAACCACTTTAAGCGCTTCTGGTGGATTCACTTGCTCGTCGCCGTTATCCTCATCGTCCTCATCGCATGC CTCATCGTCTTCGTCGTCCTGCCCAAAGTCGTCCAGAGCAAGTTGGACGCGGCCAAGCTGGATATCCAAGGCGTC GCCGTGCTGCAGACCAAAGCCAATGGCTACTTGATGGAAATCAACTCGACCATCACCACCGATGGCTCCGTCCAC GCCGACGTGGAAGGCTTCAAGGGGACCCTGACTCTGGCCGACGTCCCGGACGCCAAGCCCTTTGCCACCTTGGAC TTCCCTCCCACCACGGCCGAATCGCTGTCCACGGTCAACATCAGCCAGCCGGTTCAGATCACTGATGCCGCAGCC TTTATCCAGTTCAACACGCTCTTCTACCAGGGAAAGTCGATCCGCGTCCGACTGCACGGGAACACAAAGGTGAAG CCTCGTGGCACTGCTAGGGAGGTTGACGTCGACTTTACCAAGTTTCTCGAGTTCAACGGCTTGGAACGCTTCCAA GGCACAAAGGTCGACGGCACCGTCGATATCGCCGCACGCCCGGGCACCCCCAACTTCAGGGGCACGGCCGAGATC CCCAACAACTCCCACTTCACCCTCGAGATAGGCAACGCCACGTTTACAAACTTCGCCGACGACCAGGATCTAGGC AAACTGACCATCAATAACCTCATCCTCTACCCGGGCATCAACAAGGTCGATATCGAGGCCGAGCTCGATCAGCTC AAGGTGCTCAGCATCATCCGCAAGAGGCCATACTGCGAGACGGGCATCGTCCCCTTTAAGCTGCTCAGCACCGAC GTCGTCAACCATGGCGAGAAACTGGAATACTTCGTCGCCGCCCTCGGCAGCGCCAACCAGACCGTCGACATGGAC ATTGGCCGCGTCCTGAGCAAGGCCGTCGACGGCTTCAAGCTGTCTTGCTCACGCGGC |
| Transcript | >Ophio5|1885 ATGTCTTCCGACGCAAAGAATATGATTTCACAGTCAGAAAACGACGCCCGGATAAAGACCAGCAAGAGCCGCGCT TGCATCAACCACTTTAAGCGCTTCTGGTGGATTCACTTGCTCGTCGCCGTTATCCTCATCGTCCTCATCGCATGC CTCATCGTCTTCGTCGTCCTGCCCAAAGTCGTCCAGAGCAAGTTGGACGCGGCCAAGCTGGATATCCAAGGCGTC GCCGTGCTGCAGACCAAAGCCAATGGCTACTTGATGGAAATCAACTCGACCATCACCACCGATGGCTCCGTCCAC GCCGACGTGGAAGGCTTCAAGGGGACCCTGACTCTGGCCGACGTCCCGGACGCCAAGCCCTTTGCCACCTTGGAC TTCCCTCCCACCACGGCCGAATCGCTGTCCACGGTCAACATCAGCCAGCCGGTTCAGATCACTGATGCCGCAGCC TTTATCCAGTTCAACACGCTCTTCTACCAGGGAAAGTCGATCCGCGTCCGACTGCACGGGAACACAAAGGTGAAG CCTCGTGGCACTGCTAGGGAGGTTGACGTCGACTTTACCAAGTTTCTCGAGTTCAACGGCTTGGAACGCTTCCAA GGCACAAAGGTCGACGGCACCGTCGATATCGCCGCACGCCCGGGCACCCCCAACTTCAGGGGCACGGCCGAGATC CCCAACAACTCCCACTTCACCCTCGAGATAGGCAACGCCACGTTTACAAACTTCGCCGACGACCAGGATCTAGGC AAACTGACCATCAATAACCTCATCCTCTACCCGGGCATCAACAAGGTCGATATCGAGGCCGAGCTCGATCAGCTC AAGGTGCTCAGCATCATCCGCAAGAGGCCATACTGCGAGACGGGCATCGTCCCCTTTAAGCTGCTCAGCACCGAC GTCGTCAACCATGGCGAGAAACTGGAATACTTCGTCGCCGCCCTCGGCAGCGCCAACCAGACCGTCGACATGGAC ATTGGCCGCGTCCTGAGCAAGGCCGTCGACGGCTTCAAGCTGTCTTGCTCACGCGGCTGA |
| Gene | >Ophio5|1885 ATGTCTTCCGACGCAAAGAATATGATTTCACAGTCAGAAAACGACGCCCGGATAAAGACCAGCAAGAGCCGCGCT TGCATCAACCACTTTAAGCGCTTCTGGTGGATTCACTTGCTCGTCGCCGTTATCCTCATCGTCCTCATCGCATGC CTCATGTGAGTCGAATGGATTTCACTTTCTTCTACTGCATATCAATATAAACATATAATATACATATATGTATAT ATATACAGTTGTTTGCCAAAAAAAAAAAAAATACTCATCTTCCTTTCCAAACAGCGTCTTCGTCGTCCTGCCCAA AGTCGTCCAGAGCAAGTTGGACGCGGCCAAGCTGGATATCCAAGGCGTCGCCGTGCTGCAGACCAAAGCCAATGG CTACTTGATGGAAATCAACTCGACCATCACCACCGATGGCTCCGTCCACGCCGACGTGGAAGGCTTCAAGGGGAC CCTGACTCTGGCCGACGTCCCGGACGCCAAGCCCTTTGCCACCTTGGACTTCCCTCCCACCACGGCCGAATCGCT GTCCACGGTCAACATCAGCCAGCCGGTTCAGATCACTGATGCCGCAGCCTTTATCCAGTTCAACACGCTCTTCTA CCAGGGAAAGTCGATCCGCGTCCGACTGCACGGGAACACAAAGGTGAAGCCTCGTGGCACTGCTAGGGAGGTTGA CGTCGACTTTACCAAGTTTCTCGAGTTCAACGGCTTGGAACGCTTCCAAGGCACAAAGGTCGACGGCACCGTCGA TATCGCCGCACGCCCGGGCACCCCCAACTTCAGGGGCACGGCCGAGATCCCCAACAACTCCCACTTCACCCTCGA GATAGTGAGTTTTTGGTCCTGTACGCTCGCGGCGCCGTTCCCTCCATGCTGACGTTCCCCCCACCTCCCCCCTCC CCCCTTTCAGGGCAACGCCACGTTTACAAACTTCGCCGACGACCAGGATCTAGGCAAACTGACCATCAATAACCT CATCCTCTACCCGGGCATCAACAAGGTCGATATCGAGGCCGAGCTCGATCAGCTCAAGGTGCTCAGCATCATCCG CAAGAGGCCATACTGCGAGACGGGCATCGTCCCCTTTAAGCTGCTCAGCACCGACGTCGTCAACCATGGCGAGAA ACTGGAATACTTCGTCGCCGCCCTCGGCAGCGCCAACCAGACCGTCGACATGGACATTGGCCGCGTCCTGAGCAA GGCCGTCGACGGCTTCAAGCTGTCTTGCTCACGCGGCTGA |