© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|1877 |
| Gene name | |
| Location | scaffold_171:23969..24956 |
| Strand | + |
| Gene length (bp) | 987 |
| Transcript length (bp) | 801 |
| Coding sequence length (bp) | 798 |
| Protein length (aa) | 266 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06912 | DUF1275 | Protein of unknown function (DUF1275) | 6.5E-47 | 39 | 253 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Lysosome/Vacuole | Signal peptide | 0.1468 | 0.265 | 0.0163 | 0.2015 | 0.0728 | 0.0068 | 0.5713 | 0.5673 | 0.3713 | 0.0555 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 84 | 106 | 22 |
| 2 | 121 | 140 | 19 |
| 3 | 214 | 231 | 17 |
| 4 | 241 | 258 | 17 |
| Orthofinder run ID | 4 |
| Orthogroup | 6203 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1877 MGNKSGRDSETGGTQLKQRQGFVGSILQDVDIRLAYVPLLACCFVSGLTDGTIYNAYGTFVSMQTGNTIFVALGT SGQNNKPYGWARSLCSIVFFVLGSFTFARLYQLLGGKRRGTLTFSFLSQACVVIVAAAIVQGGVVDGRYPSTRPP SHVDFKELIIIALLSFQAAGQIVSSRSLQVGEIPTVVVTSMLCDLVSDQALFSSARNEKRTRRFWAFVLTLVGAI CGGWISKAVHAVHPSLWTVAGIKLLIAFGWAFWKPAPQLVV |
| Coding | >Ophio5|1877 ATGGGGAACAAGTCAGGCCGAGACTCGGAAACGGGGGGGACGCAATTGAAGCAGAGACAAGGCTTCGTAGGGAGC ATTCTTCAAGATGTTGACATCCGGCTTGCCTATGTGCCGCTGCTGGCCTGTTGCTTCGTCTCTGGCTTGACGGAC GGGACAATCTACAATGCGTATGGGACGTTTGTCTCCATGCAGACGGGAAACACCATCTTCGTCGCTCTCGGCACA TCAGGTCAAAACAACAAGCCATACGGTTGGGCACGATCGCTCTGCTCCATCGTCTTCTTCGTCCTAGGATCATTT ACCTTTGCGCGGCTATACCAGCTGCTAGGGGGTAAGAGACGAGGCACATTGACCTTTTCATTCCTCTCACAAGCT TGTGTCGTCATCGTCGCTGCTGCCATAGTCCAGGGCGGTGTTGTAGACGGCAGGTATCCTTCAACACGACCGCCA TCACACGTCGACTTCAAAGAGCTCATCATCATCGCCCTACTCAGTTTTCAAGCCGCTGGTCAGATTGTGAGTAGT CGCAGTTTGCAAGTCGGCGAGATTCCGACGGTTGTGGTGACGAGTATGCTGTGCGATTTGGTTTCCGATCAGGCC TTATTCTCCTCTGCTCGTAATGAGAAGCGGACTCGTCGCTTCTGGGCTTTTGTCCTTACTCTTGTTGGCGCCATC TGCGGTGGCTGGATCTCCAAGGCTGTTCATGCCGTCCATCCTTCGTTGTGGACTGTGGCCGGTATCAAGCTGCTC ATCGCCTTTGGTTGGGCCTTTTGGAAGCCGGCTCCGCAGCTGGTGGTT |
| Transcript | >Ophio5|1877 ATGGGGAACAAGTCAGGCCGAGACTCGGAAACGGGGGGGACGCAATTGAAGCAGAGACAAGGCTTCGTAGGGAGC ATTCTTCAAGATGTTGACATCCGGCTTGCCTATGTGCCGCTGCTGGCCTGTTGCTTCGTCTCTGGCTTGACGGAC GGGACAATCTACAATGCGTATGGGACGTTTGTCTCCATGCAGACGGGAAACACCATCTTCGTCGCTCTCGGCACA TCAGGTCAAAACAACAAGCCATACGGTTGGGCACGATCGCTCTGCTCCATCGTCTTCTTCGTCCTAGGATCATTT ACCTTTGCGCGGCTATACCAGCTGCTAGGGGGTAAGAGACGAGGCACATTGACCTTTTCATTCCTCTCACAAGCT TGTGTCGTCATCGTCGCTGCTGCCATAGTCCAGGGCGGTGTTGTAGACGGCAGGTATCCTTCAACACGACCGCCA TCACACGTCGACTTCAAAGAGCTCATCATCATCGCCCTACTCAGTTTTCAAGCCGCTGGTCAGATTGTGAGTAGT CGCAGTTTGCAAGTCGGCGAGATTCCGACGGTTGTGGTGACGAGTATGCTGTGCGATTTGGTTTCCGATCAGGCC TTATTCTCCTCTGCTCGTAATGAGAAGCGGACTCGTCGCTTCTGGGCTTTTGTCCTTACTCTTGTTGGCGCCATC TGCGGTGGCTGGATCTCCAAGGCTGTTCATGCCGTCCATCCTTCGTTGTGGACTGTGGCCGGTATCAAGCTGCTC ATCGCCTTTGGTTGGGCCTTTTGGAAGCCGGCTCCGCAGCTGGTGGTTTGA |
| Gene | >Ophio5|1877 ATGGGGAACAAGTCAGGCCGAGACTCGGAAACGGGGGGGACGCAATTGAAGCAGAGACAAGGCTTCGTAGGGAGC ATTCTTCAAGATGTTGACATCCGGCTTGCCTATGTGCCGCTGCTGGCCTGTTGCTTCGTCTCTGGCTTGACGGAC GGGACAATCTACAATGGTTGGTTACCACCCCCTTCTCCCGTCCCCCCCCCCCGGCAGACTTCATACGAGTTGAGG CTTATATGGCGTCTTGGCAGCGTATGGGACGTTTGTCTCCATGCAGACGGGTGAGTTTCTTTACGTCTTTCCCTT TCCGCAACTCTTTACGTCCTTCCCTTTCCCGCAATGGACGGCATCGTATCTCCAGGGTCGAGACTCAATCCCATC AACCCAGGAAACACCATCTTCGTCGCTCTCGGCACATCAGGTCAAAACAACAAGCCATACGGTTGGGCACGATCG CTCTGCTCCATCGTCTTCTTCGTCCTAGGATCATTTACCTTTGCGCGGCTATACCAGCTGCTAGGGGGTAAGAGA CGAGGCACATTGACCTTTTCATTCCTCTCACAAGCTTGTGTCGTCATCGTCGCTGCTGCCATAGTCCAGGGCGGT GTTGTAGACGGCAGGTATCCTTCAACACGACCGCCATCACACGTCGACTTCAAAGAGCTCATCATCATCGCCCTA CTCAGTTTTCAAGCCGCTGGTCAGATTGTGAGTAGTCGCAGTTTGCAAGTCGGCGAGATTCCGACGGTTGTGGTG ACGAGTATGCTGTGCGATTTGGTTTCCGATCAGGCCTTATTCTCCTCTGCTCGTAATGAGAAGCGGACTCGTCGC TTCTGGGCTTTTGTCCTTACTCTTGTTGGCGCCATCTGCGGTGGCTGGATCTCCAAGGCTGTTCATGCCGTCCAT CCTTCGTTGTGGACTGTGGCCGGTATCAAGCTGCTCATCGCCTTTGGTTGGGCCTTTTGGAAGCCGGCTCCGCAG CTGGTGGTTTGA |