Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1858
Gene name
Locationscaffold_170:24136..24694
Strand-
Gene length (bp)558
Transcript length (bp)558
Coding sequence length (bp)555
Protein length (aa) 185

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF14856 Hce2 Pathogen effector; putative necrosis-inducing factor 7.9E-13 48 147

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 23 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1858
MASSATHPLILAVLLASPLAQAVSVSSLAPFNNITGVSWSTSPATLSTCDPAAFSYDLSLDAADWRQCAALHSQW
TTEKGYFRVARPDRGAYVPILSETDCSLAVEPLGPLYGPYIIGNKDIEDILFKSLHDFSRGTLLAVNGTVSCDAG
NGGRAPLAWKISKSAGPAPPRTAGLAKRVAVSIRA
Coding >Ophio5|1858
ATGGCTTCATCAGCCACACACCCGCTCATCCTTGCCGTCCTCCTGGCTTCGCCTCTCGCCCAGGCCGTCTCAGTC
TCCTCTCTCGCACCCTTCAACAACATCACGGGCGTGTCATGGAGCACCTCGCCAGCCACCCTGAGCACCTGCGAC
CCTGCTGCCTTTTCCTACGACCTCAGCCTCGACGCCGCCGACTGGCGTCAGTGCGCCGCGCTCCATAGCCAGTGG
ACGACGGAAAAGGGCTACTTTCGGGTCGCCAGGCCCGATCGCGGCGCCTATGTGCCCATCCTGAGCGAGACGGAC
TGCTCCCTCGCCGTCGAGCCCCTCGGTCCCCTCTACGGCCCTTACATCATCGGAAATAAGGATATCGAGGATATC
CTGTTCAAGAGCTTGCATGACTTTTCGCGCGGCACTCTGCTGGCCGTCAATGGGACCGTCAGCTGCGACGCTGGT
AATGGGGGCCGCGCCCCCTTGGCTTGGAAGATTTCCAAGTCTGCCGGCCCAGCCCCCCCTCGGACTGCCGGCTTG
GCGAAGCGCGTTGCCGTCTCTATTCGGGCT
Transcript >Ophio5|1858
ATGGCTTCATCAGCCACACACCCGCTCATCCTTGCCGTCCTCCTGGCTTCGCCTCTCGCCCAGGCCGTCTCAGTC
TCCTCTCTCGCACCCTTCAACAACATCACGGGCGTGTCATGGAGCACCTCGCCAGCCACCCTGAGCACCTGCGAC
CCTGCTGCCTTTTCCTACGACCTCAGCCTCGACGCCGCCGACTGGCGTCAGTGCGCCGCGCTCCATAGCCAGTGG
ACGACGGAAAAGGGCTACTTTCGGGTCGCCAGGCCCGATCGCGGCGCCTATGTGCCCATCCTGAGCGAGACGGAC
TGCTCCCTCGCCGTCGAGCCCCTCGGTCCCCTCTACGGCCCTTACATCATCGGAAATAAGGATATCGAGGATATC
CTGTTCAAGAGCTTGCATGACTTTTCGCGCGGCACTCTGCTGGCCGTCAATGGGACCGTCAGCTGCGACGCTGGT
AATGGGGGCCGCGCCCCCTTGGCTTGGAAGATTTCCAAGTCTGCCGGCCCAGCCCCCCCTCGGACTGCCGGCTTG
GCGAAGCGCGTTGCCGTCTCTATTCGGGCTTAA
Gene >Ophio5|1858
ATGGCTTCATCAGCCACACACCCGCTCATCCTTGCCGTCCTCCTGGCTTCGCCTCTCGCCCAGGCCGTCTCAGTC
TCCTCTCTCGCACCCTTCAACAACATCACGGGCGTGTCATGGAGCACCTCGCCAGCCACCCTGAGCACCTGCGAC
CCTGCTGCCTTTTCCTACGACCTCAGCCTCGACGCCGCCGACTGGCGTCAGTGCGCCGCGCTCCATAGCCAGTGG
ACGACGGAAAAGGGCTACTTTCGGGTCGCCAGGCCCGATCGCGGCGCCTATGTGCCCATCCTGAGCGAGACGGAC
TGCTCCCTCGCCGTCGAGCCCCTCGGTCCCCTCTACGGCCCTTACATCATCGGAAATAAGGATATCGAGGATATC
CTGTTCAAGAGCTTGCATGACTTTTCGCGCGGCACTCTGCTGGCCGTCAATGGGACCGTCAGCTGCGACGCTGGT
AATGGGGGCCGCGCCCCCTTGGCTTGGAAGATTTCCAAGTCTGCCGGCCCAGCCCCCCCTCGGACTGCCGGCTTG
GCGAAGCGCGTTGCCGTCTCTATTCGGGCTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail