© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophio5|1834 |
| Gene name | |
| Location | scaffold_17:51463..52288 |
| Strand | - |
| Gene length (bp) | 825 |
| Transcript length (bp) | 825 |
| Coding sequence length (bp) | 822 |
| Protein length (aa) | 274 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00583 | Acetyltransf_1 | Acetyltransferase (GNAT) family | 1.4E-04 | 145 | 222 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008080 | N-acetyltransferase activity | Yes |
| GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | No |
| GO:0016746 | acyltransferase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0016740 | transferase activity | No |
| GO:0016410 | N-acyltransferase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0016407 | acetyltransferase activity | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Transmembrane domain | 0.1373 | 0.3374 | 0.0221 | 0.1791 | 0.2991 | 0.0364 | 0.8916 | 0.1521 | 0.2825 | 0.014 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 69 | 91 | 22 |
| 2 | 98 | 120 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 4321 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1834 MSSAEPRPPATSFPEPPPAAMSSPAQRSPPETPSSEPPPLSFELALTPDRRREALRLVADSIAQQRQVAALSIIF HPLCLAALVVGCSISWRHNGTDLGACLVAVSGLVMAYLAAIRLYTAPFLRLAEGFDCASFVSGPNGVQDVILVAR FGDDIIGTLILRLPPSAAEVDMPAQGLIRAWTTRLRYRGKGVGADLLRYAVAATRAICGDTASLAFDPDHANAVY PLNRFFRRPFTVRDEKAIKALDHALRDCKANRGGFAPVDKAAVRKPVIL |
| Coding | >Ophio5|1834 ATGAGCTCGGCTGAGCCCCGACCACCGGCTACGAGCTTTCCCGAGCCTCCTCCGGCGGCCATGAGCTCTCCCGCA CAACGCTCACCGCCCGAAACCCCTTCCTCCGAACCTCCCCCGCTCTCCTTCGAGCTGGCCCTGACGCCGGACCGC CGCCGCGAGGCCTTGCGCCTTGTCGCCGACAGCATCGCTCAGCAGCGTCAGGTAGCTGCGCTTTCCATCATCTTC CATCCGCTCTGCCTCGCCGCTCTCGTCGTCGGTTGCTCCATCTCCTGGCGCCATAACGGAACCGACCTCGGCGCC TGCCTTGTCGCCGTCTCTGGCCTTGTTATGGCCTACCTGGCTGCCATTCGTCTCTACACGGCGCCTTTTCTGCGT CTTGCGGAAGGCTTCGATTGCGCTTCCTTCGTTTCCGGTCCAAATGGCGTCCAAGATGTCATCCTCGTCGCCCGC TTCGGCGACGATATCATCGGCACCCTCATCCTGCGCCTCCCGCCCTCCGCCGCCGAGGTCGACATGCCTGCCCAG GGCCTGATCCGCGCCTGGACAACGAGGTTGAGGTATCGTGGTAAGGGTGTCGGCGCTGATCTGCTGCGCTACGCC GTCGCTGCCACCCGCGCCATCTGCGGCGACACCGCCTCTCTCGCCTTCGACCCGGACCACGCCAACGCCGTCTAT CCCCTGAATCGCTTCTTCCGCCGACCTTTTACCGTCCGTGACGAGAAAGCGATCAAGGCGTTGGACCACGCATTA AGAGACTGCAAAGCCAACCGCGGCGGCTTCGCACCCGTCGACAAGGCCGCCGTGCGGAAACCTGTCATCTTG |
| Transcript | >Ophio5|1834 ATGAGCTCGGCTGAGCCCCGACCACCGGCTACGAGCTTTCCCGAGCCTCCTCCGGCGGCCATGAGCTCTCCCGCA CAACGCTCACCGCCCGAAACCCCTTCCTCCGAACCTCCCCCGCTCTCCTTCGAGCTGGCCCTGACGCCGGACCGC CGCCGCGAGGCCTTGCGCCTTGTCGCCGACAGCATCGCTCAGCAGCGTCAGGTAGCTGCGCTTTCCATCATCTTC CATCCGCTCTGCCTCGCCGCTCTCGTCGTCGGTTGCTCCATCTCCTGGCGCCATAACGGAACCGACCTCGGCGCC TGCCTTGTCGCCGTCTCTGGCCTTGTTATGGCCTACCTGGCTGCCATTCGTCTCTACACGGCGCCTTTTCTGCGT CTTGCGGAAGGCTTCGATTGCGCTTCCTTCGTTTCCGGTCCAAATGGCGTCCAAGATGTCATCCTCGTCGCCCGC TTCGGCGACGATATCATCGGCACCCTCATCCTGCGCCTCCCGCCCTCCGCCGCCGAGGTCGACATGCCTGCCCAG GGCCTGATCCGCGCCTGGACAACGAGGTTGAGGTATCGTGGTAAGGGTGTCGGCGCTGATCTGCTGCGCTACGCC GTCGCTGCCACCCGCGCCATCTGCGGCGACACCGCCTCTCTCGCCTTCGACCCGGACCACGCCAACGCCGTCTAT CCCCTGAATCGCTTCTTCCGCCGACCTTTTACCGTCCGTGACGAGAAAGCGATCAAGGCGTTGGACCACGCATTA AGAGACTGCAAAGCCAACCGCGGCGGCTTCGCACCCGTCGACAAGGCCGCCGTGCGGAAACCTGTCATCTTGTGA |
| Gene | >Ophio5|1834 ATGAGCTCGGCTGAGCCCCGACCACCGGCTACGAGCTTTCCCGAGCCTCCTCCGGCGGCCATGAGCTCTCCCGCA CAACGCTCACCGCCCGAAACCCCTTCCTCCGAACCTCCCCCGCTCTCCTTCGAGCTGGCCCTGACGCCGGACCGC CGCCGCGAGGCCTTGCGCCTTGTCGCCGACAGCATCGCTCAGCAGCGTCAGGTAGCTGCGCTTTCCATCATCTTC CATCCGCTCTGCCTCGCCGCTCTCGTCGTCGGTTGCTCCATCTCCTGGCGCCATAACGGAACCGACCTCGGCGCC TGCCTTGTCGCCGTCTCTGGCCTTGTTATGGCCTACCTGGCTGCCATTCGTCTCTACACGGCGCCTTTTCTGCGT CTTGCGGAAGGCTTCGATTGCGCTTCCTTCGTTTCCGGTCCAAATGGCGTCCAAGATGTCATCCTCGTCGCCCGC TTCGGCGACGATATCATCGGCACCCTCATCCTGCGCCTCCCGCCCTCCGCCGCCGAGGTCGACATGCCTGCCCAG GGCCTGATCCGCGCCTGGACAACGAGGTTGAGGTATCGTGGTAAGGGTGTCGGCGCTGATCTGCTGCGCTACGCC GTCGCTGCCACCCGCGCCATCTGCGGCGACACCGCCTCTCTCGCCTTCGACCCGGACCACGCCAACGCCGTCTAT CCCCTGAATCGCTTCTTCCGCCGACCTTTTACCGTCCGTGACGAGAAAGCGATCAAGGCGTTGGACCACGCATTA AGAGACTGCAAAGCCAACCGCGGCGGCTTCGCACCCGTCGACAAGGCCGCCGTGCGGAAACCTGTCATCTTGTGA |