© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|1828 |
| Gene name | |
| Location | scaffold_17:40573..41196 |
| Strand | + |
| Gene length (bp) | 623 |
| Transcript length (bp) | 564 |
| Coding sequence length (bp) | 561 |
| Protein length (aa) | 187 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 23 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
| 2 | 50 | 72 | 22 |
| 3 | 78 | 100 | 22 |
| 4 | 150 | 172 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 5.11 | 0.49 | 9.74 |
| CcL | In ants, during behavior modification | 1414.14 | 169.94 | 2658.35 |
| CcD | In ants, recently dead | 867.46 | 401.21 | 1333.72 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 0.000286 | yes |
| CcL | CcD | 0.223378 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1828 MAPPPGLGALGLTFTAMRGMQAVALIAIIGLTSNFISEMVTAGYVAPSALVGTLVVACFAAVYTIITYILYWDSL LPLLISTAADGLCLIGVIAVACVVGKPVSYLSCPKLPDSGNMATFIDSLFRNLSREHVYEWVNPDKTACFEIKAV WGLSICLCILYFMSAVASICLWKRLKGSPPPAGKDME |
| Coding | >Ophio5|1828 ATGGCGCCTCCTCCTGGGCTTGGAGCGTTGGGCTTGACCTTTACGGCCATGCGTGGAATGCAGGCGGTTGCGCTC ATTGCCATCATCGGACTGACGTCCAACTTTATCTCGGAGATGGTCACGGCTGGTTACGTGGCGCCGTCTGCCCTG GTTGGCACTTTGGTTGTTGCTTGCTTCGCTGCTGTCTACACCATCATCACTTACATCCTCTACTGGGACTCTCTT CTCCCCTTGCTCATCTCCACAGCCGCCGACGGCCTGTGCCTCATCGGCGTCATTGCTGTGGCCTGCGTCGTCGGA AAGCCTGTCAGCTATCTGTCCTGCCCGAAGCTGCCGGACTCTGGCAACATGGCCACCTTCATCGACTCGCTCTTC CGCAACCTATCGCGCGAGCATGTCTACGAATGGGTCAACCCGGACAAGACGGCCTGTTTCGAGATCAAGGCCGTC TGGGGCCTGAGCATCTGCCTCTGCATCCTCTACTTCATGTCCGCCGTCGCGTCCATCTGCCTCTGGAAGCGCCTC AAGGGTAGCCCGCCACCGGCCGGCAAGGACATGGAA |
| Transcript | >Ophio5|1828 ATGGCGCCTCCTCCTGGGCTTGGAGCGTTGGGCTTGACCTTTACGGCCATGCGTGGAATGCAGGCGGTTGCGCTC ATTGCCATCATCGGACTGACGTCCAACTTTATCTCGGAGATGGTCACGGCTGGTTACGTGGCGCCGTCTGCCCTG GTTGGCACTTTGGTTGTTGCTTGCTTCGCTGCTGTCTACACCATCATCACTTACATCCTCTACTGGGACTCTCTT CTCCCCTTGCTCATCTCCACAGCCGCCGACGGCCTGTGCCTCATCGGCGTCATTGCTGTGGCCTGCGTCGTCGGA AAGCCTGTCAGCTATCTGTCCTGCCCGAAGCTGCCGGACTCTGGCAACATGGCCACCTTCATCGACTCGCTCTTC CGCAACCTATCGCGCGAGCATGTCTACGAATGGGTCAACCCGGACAAGACGGCCTGTTTCGAGATCAAGGCCGTC TGGGGCCTGAGCATCTGCCTCTGCATCCTCTACTTCATGTCCGCCGTCGCGTCCATCTGCCTCTGGAAGCGCCTC AAGGGTAGCCCGCCACCGGCCGGCAAGGACATGGAATGA |
| Gene | >Ophio5|1828 ATGGCGCCTCCTCCTGGGCTTGGAGCGTTGGGCTTGACCTTTACGGCCATGCGTGGAATGCAGGCGGTTGCGCTC ATTGCCATCATCGGACTGACGTCCAACTTTATCTCGGAGATGGTCACGGCTGGTTACGTGGCGCCGTCTGCCCTG GTTGGCACTTTGGTTGTTGTACGTTCCATGCTGAGAAAAGGGGGGGAGCAAAAAGAAAGAGACTAACGAGATGAT AGGCTTGCTTCGCTGCTGTCTACACCATCATCACTTACATCCTCTACTGGGACTCTCTTCTCCCCTTGCTCATCT CCACAGCCGCCGACGGCCTGTGCCTCATCGGCGTCATTGCTGTGGCCTGCGTCGTCGGAAAGCCTGTCAGCTATC TGTCCTGCCCGAAGCTGCCGGACTCTGGCAACATGGCCACCTTCATCGACTCGCTCTTCCGCAACCTATCGCGCG AGCATGTCTACGAATGGGTCAACCCGGACAAGACGGCCTGTTTCGAGATCAAGGCCGTCTGGGGCCTGAGCATCT GCCTCTGCATCCTCTACTTCATGTCCGCCGTCGCGTCCATCTGCCTCTGGAAGCGCCTCAAGGGTAGCCCGCCAC CGGCCGGCAAGGACATGGAATGA |