Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1828
Gene name
Locationscaffold_17:40573..41196
Strand+
Gene length (bp)623
Transcript length (bp)564
Coding sequence length (bp)561
Protein length (aa) 187

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 23 0.5

Transmembrane Domains

Domain # Start End Length
1 15 37 22
2 50 72 22
3 78 100 22
4 150 172 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 5.11 0.49 9.74
CcL In ants, during behavior modification 1414.14 169.94 2658.35
CcD In ants, recently dead 867.46 401.21 1333.72

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.000286 yes
SC16a CcD 0.000286 yes
CcL CcD 0.223378 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1828
MAPPPGLGALGLTFTAMRGMQAVALIAIIGLTSNFISEMVTAGYVAPSALVGTLVVACFAAVYTIITYILYWDSL
LPLLISTAADGLCLIGVIAVACVVGKPVSYLSCPKLPDSGNMATFIDSLFRNLSREHVYEWVNPDKTACFEIKAV
WGLSICLCILYFMSAVASICLWKRLKGSPPPAGKDME
Coding >Ophio5|1828
ATGGCGCCTCCTCCTGGGCTTGGAGCGTTGGGCTTGACCTTTACGGCCATGCGTGGAATGCAGGCGGTTGCGCTC
ATTGCCATCATCGGACTGACGTCCAACTTTATCTCGGAGATGGTCACGGCTGGTTACGTGGCGCCGTCTGCCCTG
GTTGGCACTTTGGTTGTTGCTTGCTTCGCTGCTGTCTACACCATCATCACTTACATCCTCTACTGGGACTCTCTT
CTCCCCTTGCTCATCTCCACAGCCGCCGACGGCCTGTGCCTCATCGGCGTCATTGCTGTGGCCTGCGTCGTCGGA
AAGCCTGTCAGCTATCTGTCCTGCCCGAAGCTGCCGGACTCTGGCAACATGGCCACCTTCATCGACTCGCTCTTC
CGCAACCTATCGCGCGAGCATGTCTACGAATGGGTCAACCCGGACAAGACGGCCTGTTTCGAGATCAAGGCCGTC
TGGGGCCTGAGCATCTGCCTCTGCATCCTCTACTTCATGTCCGCCGTCGCGTCCATCTGCCTCTGGAAGCGCCTC
AAGGGTAGCCCGCCACCGGCCGGCAAGGACATGGAA
Transcript >Ophio5|1828
ATGGCGCCTCCTCCTGGGCTTGGAGCGTTGGGCTTGACCTTTACGGCCATGCGTGGAATGCAGGCGGTTGCGCTC
ATTGCCATCATCGGACTGACGTCCAACTTTATCTCGGAGATGGTCACGGCTGGTTACGTGGCGCCGTCTGCCCTG
GTTGGCACTTTGGTTGTTGCTTGCTTCGCTGCTGTCTACACCATCATCACTTACATCCTCTACTGGGACTCTCTT
CTCCCCTTGCTCATCTCCACAGCCGCCGACGGCCTGTGCCTCATCGGCGTCATTGCTGTGGCCTGCGTCGTCGGA
AAGCCTGTCAGCTATCTGTCCTGCCCGAAGCTGCCGGACTCTGGCAACATGGCCACCTTCATCGACTCGCTCTTC
CGCAACCTATCGCGCGAGCATGTCTACGAATGGGTCAACCCGGACAAGACGGCCTGTTTCGAGATCAAGGCCGTC
TGGGGCCTGAGCATCTGCCTCTGCATCCTCTACTTCATGTCCGCCGTCGCGTCCATCTGCCTCTGGAAGCGCCTC
AAGGGTAGCCCGCCACCGGCCGGCAAGGACATGGAATGA
Gene >Ophio5|1828
ATGGCGCCTCCTCCTGGGCTTGGAGCGTTGGGCTTGACCTTTACGGCCATGCGTGGAATGCAGGCGGTTGCGCTC
ATTGCCATCATCGGACTGACGTCCAACTTTATCTCGGAGATGGTCACGGCTGGTTACGTGGCGCCGTCTGCCCTG
GTTGGCACTTTGGTTGTTGTACGTTCCATGCTGAGAAAAGGGGGGGAGCAAAAAGAAAGAGACTAACGAGATGAT
AGGCTTGCTTCGCTGCTGTCTACACCATCATCACTTACATCCTCTACTGGGACTCTCTTCTCCCCTTGCTCATCT
CCACAGCCGCCGACGGCCTGTGCCTCATCGGCGTCATTGCTGTGGCCTGCGTCGTCGGAAAGCCTGTCAGCTATC
TGTCCTGCCCGAAGCTGCCGGACTCTGGCAACATGGCCACCTTCATCGACTCGCTCTTCCGCAACCTATCGCGCG
AGCATGTCTACGAATGGGTCAACCCGGACAAGACGGCCTGTTTCGAGATCAAGGCCGTCTGGGGCCTGAGCATCT
GCCTCTGCATCCTCTACTTCATGTCCGCCGTCGCGTCCATCTGCCTCTGGAAGCGCCTCAAGGGTAGCCCGCCAC
CGGCCGGCAAGGACATGGAATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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