© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|1817 |
| Gene name | |
| Location | scaffold_17:17715..18587 |
| Strand | + |
| Gene length (bp) | 872 |
| Transcript length (bp) | 819 |
| Coding sequence length (bp) | 816 |
| Protein length (aa) | 272 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06912 | DUF1275 | Protein of unknown function (DUF1275) | 1.9E-48 | 46 | 254 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 62 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 37 | 56 | 19 |
| 2 | 63 | 85 | 22 |
| 3 | 95 | 112 | 17 |
| 4 | 125 | 147 | 22 |
| 5 | 157 | 176 | 19 |
| 6 | 215 | 232 | 17 |
| 7 | 237 | 259 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 122.54 | 67.58 | 177.50 |
| CcL | In ants, during behavior modification | 93.76 | 49.95 | 137.57 |
| CcD | In ants, recently dead | 123.46 | 68.68 | 178.23 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.268603 | no |
| SC16a | CcD | 0.979871 | no |
| CcL | CcD | 0.244634 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1817 MTGSDDFPAGEGSPLLGRREPPTYMASRLASRLTDDVSRSWADVVLLLCYVVTGLLDSASTQVWGAFVSMQTGNT VYVGLGLASLVSPPASPRLYRSGVSLVSFCLGSFLFSRFHRRFSPRRRWVLCASFAVQAALIVFAALIIATAPPA RDDAVDWTVLLPLALVAFQSCAQAVASRALRYNALTSVVLTSIYCDLFSDQDLLALRNVERNRRAAAPLLLLLGA VAGGLLAHSSLGISGALWCAAAIKFCMVIVWFSWPPEPEVNVDETPS |
| Coding | >Ophio5|1817 ATGACCGGCTCCGATGATTTCCCGGCCGGCGAGGGCTCGCCGTTGCTCGGCCGGCGAGAGCCTCCCACGTACATG GCATCACGACTGGCCAGCCGGCTAACCGACGACGTGTCGCGCTCGTGGGCAGACGTCGTTCTTCTGCTGTGCTAC GTCGTCACCGGTCTTCTCGACAGCGCATCGACGCAGGTTTGGGGCGCCTTCGTCTCCATGCAGACTGGTAACACC GTTTACGTCGGCCTTGGCCTCGCCTCGCTCGTCTCACCCCCGGCTTCTCCACGGCTATACCGCTCGGGCGTCTCC CTCGTCTCCTTTTGCCTTGGGTCCTTTCTTTTCTCCCGCTTCCATCGCCGCTTCTCCCCTCGTCGTCGTTGGGTG CTCTGTGCCTCCTTCGCCGTCCAGGCCGCTCTCATCGTCTTCGCCGCCCTCATAATCGCCACAGCGCCGCCGGCT CGCGACGACGCGGTCGACTGGACCGTCCTGCTGCCCCTCGCCCTCGTCGCATTCCAGAGCTGTGCCCAGGCCGTG GCCAGTCGCGCACTTCGCTATAACGCCCTGACCAGCGTCGTCCTCACCAGCATCTACTGCGACCTGTTCTCCGAC CAGGACCTATTGGCCTTACGCAACGTCGAGCGGAACCGCCGCGCTGCCGCTCCGCTACTGCTGCTTCTCGGTGCC GTCGCAGGAGGCCTATTGGCTCACAGCTCCCTCGGCATCAGCGGCGCCCTGTGGTGCGCCGCCGCCATCAAGTTT TGCATGGTCATCGTCTGGTTCTCGTGGCCCCCGGAGCCTGAGGTCAACGTCGACGAAACGCCATCA |
| Transcript | >Ophio5|1817 ATGACCGGCTCCGATGATTTCCCGGCCGGCGAGGGCTCGCCGTTGCTCGGCCGGCGAGAGCCTCCCACGTACATG GCATCACGACTGGCCAGCCGGCTAACCGACGACGTGTCGCGCTCGTGGGCAGACGTCGTTCTTCTGCTGTGCTAC GTCGTCACCGGTCTTCTCGACAGCGCATCGACGCAGGTTTGGGGCGCCTTCGTCTCCATGCAGACTGGTAACACC GTTTACGTCGGCCTTGGCCTCGCCTCGCTCGTCTCACCCCCGGCTTCTCCACGGCTATACCGCTCGGGCGTCTCC CTCGTCTCCTTTTGCCTTGGGTCCTTTCTTTTCTCCCGCTTCCATCGCCGCTTCTCCCCTCGTCGTCGTTGGGTG CTCTGTGCCTCCTTCGCCGTCCAGGCCGCTCTCATCGTCTTCGCCGCCCTCATAATCGCCACAGCGCCGCCGGCT CGCGACGACGCGGTCGACTGGACCGTCCTGCTGCCCCTCGCCCTCGTCGCATTCCAGAGCTGTGCCCAGGCCGTG GCCAGTCGCGCACTTCGCTATAACGCCCTGACCAGCGTCGTCCTCACCAGCATCTACTGCGACCTGTTCTCCGAC CAGGACCTATTGGCCTTACGCAACGTCGAGCGGAACCGCCGCGCTGCCGCTCCGCTACTGCTGCTTCTCGGTGCC GTCGCAGGAGGCCTATTGGCTCACAGCTCCCTCGGCATCAGCGGCGCCCTGTGGTGCGCCGCCGCCATCAAGTTT TGCATGGTCATCGTCTGGTTCTCGTGGCCCCCGGAGCCTGAGGTCAACGTCGACGAAACGCCATCATGA |
| Gene | >Ophio5|1817 ATGACCGGCTCCGATGATTTCCCGGCCGGCGAGGGCTCGCCGTTGCTCGGCCGGCGAGAGCCTCCCACGTACATG GCATCACGACTGGCCAGCCGGCTAACCGACGACGTGTCGCGCTCGTGGGCAGACGTCGTTCTTCTGCTGTGCTAC GTCGTCACCGGTCTTCTCGACAGCGCATCGACGCAGGTTTGGGGCGCCTTCGTCTCCATGCAGACTGGTTGCGTC TTCCGCCTCATCCCGACGCCTCTTCGGGTCTGACACGAGACGCAGGTAACACCGTTTACGTCGGCCTTGGCCTCG CCTCGCTCGTCTCACCCCCGGCTTCTCCACGGCTATACCGCTCGGGCGTCTCCCTCGTCTCCTTTTGCCTTGGGT CCTTTCTTTTCTCCCGCTTCCATCGCCGCTTCTCCCCTCGTCGTCGTTGGGTGCTCTGTGCCTCCTTCGCCGTCC AGGCCGCTCTCATCGTCTTCGCCGCCCTCATAATCGCCACAGCGCCGCCGGCTCGCGACGACGCGGTCGACTGGA CCGTCCTGCTGCCCCTCGCCCTCGTCGCATTCCAGAGCTGTGCCCAGGCCGTGGCCAGTCGCGCACTTCGCTATA ACGCCCTGACCAGCGTCGTCCTCACCAGCATCTACTGCGACCTGTTCTCCGACCAGGACCTATTGGCCTTACGCA ACGTCGAGCGGAACCGCCGCGCTGCCGCTCCGCTACTGCTGCTTCTCGGTGCCGTCGCAGGAGGCCTATTGGCTC ACAGCTCCCTCGGCATCAGCGGCGCCCTGTGGTGCGCCGCCGCCATCAAGTTTTGCATGGTCATCGTCTGGTTCT CGTGGCCCCCGGAGCCTGAGGTCAACGTCGACGAAACGCCATCATGA |