Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1817
Gene name
Locationscaffold_17:17715..18587
Strand+
Gene length (bp)872
Transcript length (bp)819
Coding sequence length (bp)816
Protein length (aa) 272

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF06912 DUF1275 Protein of unknown function (DUF1275) 1.9E-48 46 254

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 62 0.5

Transmembrane Domains

Domain # Start End Length
1 37 56 19
2 63 85 22
3 95 112 17
4 125 147 22
5 157 176 19
6 215 232 17
7 237 259 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1817
MTGSDDFPAGEGSPLLGRREPPTYMASRLASRLTDDVSRSWADVVLLLCYVVTGLLDSASTQVWGAFVSMQTGNT
VYVGLGLASLVSPPASPRLYRSGVSLVSFCLGSFLFSRFHRRFSPRRRWVLCASFAVQAALIVFAALIIATAPPA
RDDAVDWTVLLPLALVAFQSCAQAVASRALRYNALTSVVLTSIYCDLFSDQDLLALRNVERNRRAAAPLLLLLGA
VAGGLLAHSSLGISGALWCAAAIKFCMVIVWFSWPPEPEVNVDETPS
Coding >Ophio5|1817
ATGACCGGCTCCGATGATTTCCCGGCCGGCGAGGGCTCGCCGTTGCTCGGCCGGCGAGAGCCTCCCACGTACATG
GCATCACGACTGGCCAGCCGGCTAACCGACGACGTGTCGCGCTCGTGGGCAGACGTCGTTCTTCTGCTGTGCTAC
GTCGTCACCGGTCTTCTCGACAGCGCATCGACGCAGGTTTGGGGCGCCTTCGTCTCCATGCAGACTGGTAACACC
GTTTACGTCGGCCTTGGCCTCGCCTCGCTCGTCTCACCCCCGGCTTCTCCACGGCTATACCGCTCGGGCGTCTCC
CTCGTCTCCTTTTGCCTTGGGTCCTTTCTTTTCTCCCGCTTCCATCGCCGCTTCTCCCCTCGTCGTCGTTGGGTG
CTCTGTGCCTCCTTCGCCGTCCAGGCCGCTCTCATCGTCTTCGCCGCCCTCATAATCGCCACAGCGCCGCCGGCT
CGCGACGACGCGGTCGACTGGACCGTCCTGCTGCCCCTCGCCCTCGTCGCATTCCAGAGCTGTGCCCAGGCCGTG
GCCAGTCGCGCACTTCGCTATAACGCCCTGACCAGCGTCGTCCTCACCAGCATCTACTGCGACCTGTTCTCCGAC
CAGGACCTATTGGCCTTACGCAACGTCGAGCGGAACCGCCGCGCTGCCGCTCCGCTACTGCTGCTTCTCGGTGCC
GTCGCAGGAGGCCTATTGGCTCACAGCTCCCTCGGCATCAGCGGCGCCCTGTGGTGCGCCGCCGCCATCAAGTTT
TGCATGGTCATCGTCTGGTTCTCGTGGCCCCCGGAGCCTGAGGTCAACGTCGACGAAACGCCATCA
Transcript >Ophio5|1817
ATGACCGGCTCCGATGATTTCCCGGCCGGCGAGGGCTCGCCGTTGCTCGGCCGGCGAGAGCCTCCCACGTACATG
GCATCACGACTGGCCAGCCGGCTAACCGACGACGTGTCGCGCTCGTGGGCAGACGTCGTTCTTCTGCTGTGCTAC
GTCGTCACCGGTCTTCTCGACAGCGCATCGACGCAGGTTTGGGGCGCCTTCGTCTCCATGCAGACTGGTAACACC
GTTTACGTCGGCCTTGGCCTCGCCTCGCTCGTCTCACCCCCGGCTTCTCCACGGCTATACCGCTCGGGCGTCTCC
CTCGTCTCCTTTTGCCTTGGGTCCTTTCTTTTCTCCCGCTTCCATCGCCGCTTCTCCCCTCGTCGTCGTTGGGTG
CTCTGTGCCTCCTTCGCCGTCCAGGCCGCTCTCATCGTCTTCGCCGCCCTCATAATCGCCACAGCGCCGCCGGCT
CGCGACGACGCGGTCGACTGGACCGTCCTGCTGCCCCTCGCCCTCGTCGCATTCCAGAGCTGTGCCCAGGCCGTG
GCCAGTCGCGCACTTCGCTATAACGCCCTGACCAGCGTCGTCCTCACCAGCATCTACTGCGACCTGTTCTCCGAC
CAGGACCTATTGGCCTTACGCAACGTCGAGCGGAACCGCCGCGCTGCCGCTCCGCTACTGCTGCTTCTCGGTGCC
GTCGCAGGAGGCCTATTGGCTCACAGCTCCCTCGGCATCAGCGGCGCCCTGTGGTGCGCCGCCGCCATCAAGTTT
TGCATGGTCATCGTCTGGTTCTCGTGGCCCCCGGAGCCTGAGGTCAACGTCGACGAAACGCCATCATGA
Gene >Ophio5|1817
ATGACCGGCTCCGATGATTTCCCGGCCGGCGAGGGCTCGCCGTTGCTCGGCCGGCGAGAGCCTCCCACGTACATG
GCATCACGACTGGCCAGCCGGCTAACCGACGACGTGTCGCGCTCGTGGGCAGACGTCGTTCTTCTGCTGTGCTAC
GTCGTCACCGGTCTTCTCGACAGCGCATCGACGCAGGTTTGGGGCGCCTTCGTCTCCATGCAGACTGGTTGCGTC
TTCCGCCTCATCCCGACGCCTCTTCGGGTCTGACACGAGACGCAGGTAACACCGTTTACGTCGGCCTTGGCCTCG
CCTCGCTCGTCTCACCCCCGGCTTCTCCACGGCTATACCGCTCGGGCGTCTCCCTCGTCTCCTTTTGCCTTGGGT
CCTTTCTTTTCTCCCGCTTCCATCGCCGCTTCTCCCCTCGTCGTCGTTGGGTGCTCTGTGCCTCCTTCGCCGTCC
AGGCCGCTCTCATCGTCTTCGCCGCCCTCATAATCGCCACAGCGCCGCCGGCTCGCGACGACGCGGTCGACTGGA
CCGTCCTGCTGCCCCTCGCCCTCGTCGCATTCCAGAGCTGTGCCCAGGCCGTGGCCAGTCGCGCACTTCGCTATA
ACGCCCTGACCAGCGTCGTCCTCACCAGCATCTACTGCGACCTGTTCTCCGACCAGGACCTATTGGCCTTACGCA
ACGTCGAGCGGAACCGCCGCGCTGCCGCTCCGCTACTGCTGCTTCTCGGTGCCGTCGCAGGAGGCCTATTGGCTC
ACAGCTCCCTCGGCATCAGCGGCGCCCTGTGGTGCGCCGCCGCCATCAAGTTTTGCATGGTCATCGTCTGGTTCT
CGTGGCCCCCGGAGCCTGAGGTCAACGTCGACGAAACGCCATCATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail