© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|1816 |
| Gene name | |
| Location | scaffold_17:15670..17280 |
| Strand | - |
| Gene length (bp) | 1610 |
| Transcript length (bp) | 1356 |
| Coding sequence length (bp) | 1353 |
| Protein length (aa) | 451 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00190 | Cupin_1 | Cupin | 6.2E-20 | 123 | 251 |
| PF00190 | Cupin_1 | Cupin | 5.3E-20 | 294 | 411 |
| PF07883 | Cupin_2 | Cupin domain | 2.9E-13 | 146 | 218 |
| PF07883 | Cupin_2 | Cupin domain | 7.3E-13 | 325 | 399 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O34714|OXDC_BACSU | Oxalate decarboxylase OxdC OS=Bacillus subtilis (strain 168) GN=oxdC PE=1 SV=1 | 66 | 450 | 3.0E-149 |
| sp|O34767|OXDD_BACSU | Oxalate decarboxylase OxdD OS=Bacillus subtilis (strain 168) GN=oxdD PE=1 SV=1 | 70 | 451 | 3.0E-134 |
| sp|D4AKL6|OXDD_ARTBC | Probable oxalate decarboxylase ARB_04859 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_04859 PE=1 SV=1 | 74 | 420 | 1.0E-90 |
| sp|D4B179|OXDC_ARTBC | Oxalate decarboxylase ARB_02208 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_02208 PE=1 SV=1 | 74 | 420 | 5.0E-86 |
| sp|D4B179|OXDC_ARTBC | Oxalate decarboxylase ARB_02208 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_02208 PE=1 SV=1 | 124 | 266 | 2.0E-10 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O34714|OXDC_BACSU | Oxalate decarboxylase OxdC OS=Bacillus subtilis (strain 168) GN=oxdC PE=1 SV=1 | 66 | 450 | 3.0E-149 |
| sp|O34767|OXDD_BACSU | Oxalate decarboxylase OxdD OS=Bacillus subtilis (strain 168) GN=oxdD PE=1 SV=1 | 70 | 451 | 3.0E-134 |
| sp|D4AKL6|OXDD_ARTBC | Probable oxalate decarboxylase ARB_04859 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_04859 PE=1 SV=1 | 74 | 420 | 1.0E-90 |
| sp|D4B179|OXDC_ARTBC | Oxalate decarboxylase ARB_02208 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_02208 PE=1 SV=1 | 74 | 420 | 5.0E-86 |
| sp|D4B179|OXDC_ARTBC | Oxalate decarboxylase ARB_02208 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_02208 PE=1 SV=1 | 124 | 266 | 2.0E-10 |
| sp|D4AKL6|OXDD_ARTBC | Probable oxalate decarboxylase ARB_04859 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_04859 PE=1 SV=1 | 93 | 264 | 2.0E-09 |
| sp|Q6I544|GL52_ORYSJ | Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0277500 PE=2 SV=1 | 321 | 441 | 4.0E-07 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 34 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 77.05 | 41.64 | 112.46 |
| CcL | In ants, during behavior modification | 61.67 | 33.87 | 89.47 |
| CcD | In ants, recently dead | 55.30 | 29.86 | 80.75 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.356121 | no |
| SC16a | CcD | 0.162691 | no |
| CcL | CcD | 0.676166 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1816 MYVPPEVFTIPPIMKLAAASQWLFLAAAGPSSALPGRRDTQQPLTGTPYTPDHRDPYDSKIDPVGQNLDPLPWRN GKGASVLGPWNRERSRQSPDLVRPPSTDHGAIANMRWSFADSHMRIEEGGWSRQTTIRELPTSVELAGVNMRLDP GAIRELHWHKQAEWAYVLAGEVRVTAIDYEGGSFIDDLRKGDLWYFPSGVPHSLQGLGENGTEFLLIFDDGNFSE ESTFLLTDWLAHTPRSVVGENFRLDPGVFKNLPPREKFIFRGSKPGSIDEERPQGKHVKPSNYRFTHRMLDQKPK YTSGGQVRITDSENFDVSKTVSAAHVIIEPGALREMHWHPTADEWSFFIRGRARITVFAAEGNARTFDYVPGDVG IVPKNMGHFVENIGDEPVEMLEIFRSDRFRDFSLFQWMGETPRRLVVDHLFQHDEEAGRKFLEKIKDAEKDEVKK P |
| Coding | >Ophio5|1816 ATGTATGTTCCGCCAGAAGTTTTCACTATTCCTCCCATCATGAAGCTCGCTGCCGCCAGTCAGTGGCTATTCCTT GCCGCAGCAGGCCCATCGTCGGCCCTACCCGGTCGTCGTGATACGCAACAACCGCTTACCGGCACGCCTTATACC CCCGACCACCGCGACCCCTACGACAGCAAGATTGACCCTGTGGGTCAAAATCTCGATCCTCTTCCCTGGCGTAAC GGCAAAGGTGCCTCGGTGCTGGGACCATGGAACCGGGAGCGCTCACGACAGAGCCCGGACCTGGTGCGGCCGCCA AGCACCGACCACGGCGCCATCGCCAACATGCGATGGAGTTTCGCCGACTCTCACATGCGCATCGAGGAAGGGGGC TGGAGTAGGCAAACAACAATTCGCGAGCTGCCAACTAGCGTGGAGCTCGCCGGGGTGAATATGCGTCTCGACCCA GGCGCCATCCGCGAGCTGCACTGGCACAAGCAGGCCGAGTGGGCGTACGTGCTTGCAGGCGAGGTTCGCGTCACG GCTATCGACTATGAGGGCGGTTCCTTTATCGACGATCTCCGGAAGGGAGACCTGTGGTATTTTCCCAGCGGCGTT CCTCACTCGCTACAGGGGCTCGGCGAGAACGGCACCGAGTTTCTCCTCATCTTCGACGATGGCAACTTTTCTGAG GAGTCTACCTTCCTTCTGACCGACTGGCTGGCCCACACGCCCCGGTCCGTCGTCGGGGAAAACTTCCGACTCGAT CCCGGTGTCTTCAAGAACCTGCCCCCACGCGAGAAGTTCATCTTCCGCGGCTCCAAGCCTGGATCCATCGATGAA GAGCGGCCTCAGGGCAAGCACGTCAAGCCGTCCAACTACCGCTTCACTCACCGCATGCTCGATCAAAAGCCCAAG TACACGAGCGGTGGCCAGGTCCGCATTACCGACTCGGAAAACTTTGATGTATCCAAGACGGTTTCCGCGGCGCAC GTCATCATCGAGCCGGGCGCCCTGCGCGAGATGCATTGGCACCCGACGGCCGACGAGTGGTCTTTCTTCATTCGC GGCCGGGCCCGCATCACCGTCTTTGCTGCTGAAGGCAACGCCCGCACTTTCGACTACGTACCGGGCGATGTCGGT ATTGTTCCCAAGAACATGGGTCATTTCGTCGAGAATATTGGTGACGAGCCCGTCGAAATGCTCGAGATCTTTCGC TCGGACCGATTCCGCGACTTTTCCCTCTTCCAGTGGATGGGCGAGACGCCGCGCCGCTTGGTCGTCGACCACCTC TTCCAGCATGATGAAGAGGCCGGCCGCAAGTTTTTGGAGAAAATCAAGGATGCGGAAAAGGATGAGGTCAAGAAG CCG |
| Transcript | >Ophio5|1816 ATGTATGTTCCGCCAGAAGTTTTCACTATTCCTCCCATCATGAAGCTCGCTGCCGCCAGTCAGTGGCTATTCCTT GCCGCAGCAGGCCCATCGTCGGCCCTACCCGGTCGTCGTGATACGCAACAACCGCTTACCGGCACGCCTTATACC CCCGACCACCGCGACCCCTACGACAGCAAGATTGACCCTGTGGGTCAAAATCTCGATCCTCTTCCCTGGCGTAAC GGCAAAGGTGCCTCGGTGCTGGGACCATGGAACCGGGAGCGCTCACGACAGAGCCCGGACCTGGTGCGGCCGCCA AGCACCGACCACGGCGCCATCGCCAACATGCGATGGAGTTTCGCCGACTCTCACATGCGCATCGAGGAAGGGGGC TGGAGTAGGCAAACAACAATTCGCGAGCTGCCAACTAGCGTGGAGCTCGCCGGGGTGAATATGCGTCTCGACCCA GGCGCCATCCGCGAGCTGCACTGGCACAAGCAGGCCGAGTGGGCGTACGTGCTTGCAGGCGAGGTTCGCGTCACG GCTATCGACTATGAGGGCGGTTCCTTTATCGACGATCTCCGGAAGGGAGACCTGTGGTATTTTCCCAGCGGCGTT CCTCACTCGCTACAGGGGCTCGGCGAGAACGGCACCGAGTTTCTCCTCATCTTCGACGATGGCAACTTTTCTGAG GAGTCTACCTTCCTTCTGACCGACTGGCTGGCCCACACGCCCCGGTCCGTCGTCGGGGAAAACTTCCGACTCGAT CCCGGTGTCTTCAAGAACCTGCCCCCACGCGAGAAGTTCATCTTCCGCGGCTCCAAGCCTGGATCCATCGATGAA GAGCGGCCTCAGGGCAAGCACGTCAAGCCGTCCAACTACCGCTTCACTCACCGCATGCTCGATCAAAAGCCCAAG TACACGAGCGGTGGCCAGGTCCGCATTACCGACTCGGAAAACTTTGATGTATCCAAGACGGTTTCCGCGGCGCAC GTCATCATCGAGCCGGGCGCCCTGCGCGAGATGCATTGGCACCCGACGGCCGACGAGTGGTCTTTCTTCATTCGC GGCCGGGCCCGCATCACCGTCTTTGCTGCTGAAGGCAACGCCCGCACTTTCGACTACGTACCGGGCGATGTCGGT ATTGTTCCCAAGAACATGGGTCATTTCGTCGAGAATATTGGTGACGAGCCCGTCGAAATGCTCGAGATCTTTCGC TCGGACCGATTCCGCGACTTTTCCCTCTTCCAGTGGATGGGCGAGACGCCGCGCCGCTTGGTCGTCGACCACCTC TTCCAGCATGATGAAGAGGCCGGCCGCAAGTTTTTGGAGAAAATCAAGGATGCGGAAAAGGATGAGGTCAAGAAG CCGTGA |
| Gene | >Ophio5|1816 ATGTATGTTCGTGAGTTTATGGTTGATCTTTACATCTCGCGGCATCCTCCTTGAATATATACCCTGTGGACCAGA GCGCCAGAAGTTTTCAGTGAGCTGCTGTCCTCCTCTCCACCTTTTCTTTTGCACCTCATCCCCGAGCTAACCGGC TCATCATCCAGCTATTCCTCCCATCATGAAGCTCGCTGCCGCCAGTCAGTGGCTATTCCTTGCCGCAGCAGGCCC ATCGTCGGCCCTACCCGGTCGTCGTGATACGCAACAACCGCTTACCGGCACGCCTTATACCCCCGACCACCGCGA CCCCTACGACAGCAAGATTGACCCTGTGGGTCAAAATCTCGATCCTCTTCCCTGGCGTAACGGCAAAGGTGCCTC GGTGCTGGGACCATGGAACCGGGAGCGCTCACGACAGAGCCCGGACCTGGTGCGGCCGCCAAGCACCGACCACGG CGCCATCGCCAACATGCGATGGAGTTTCGCCGACTCTCACATGCGCATCGAGGTATGTTCTGTATTTCCTCAAAG CGCGGCCGCGGATGCTCACCAAAGCTGCCTGTAGGAAGGGGGCTGGAGTAGGCAAACAACAATTCGCGAGCTGCC AACTAGCGTGGAGCTCGCCGGGGTGAATATGCGTCTCGACCCAGGCGCCATCCGCGAGCTGCACTGGCACAAGCA GGCCGAGTGGGCGTACGTGCTTGCAGGCGAGGTTCGCGTCACGGCTATCGACTATGAGGGCGGTTCCTTTATCGA CGATCTCCGGAAGGGAGACCTGTGGTATTTTCCCAGCGGCGTTCCTCACTCGCTACAGGGGCTCGGCGAGAACGG CACCGAGTTTCTCCTCATCTTCGACGATGGCAACTTTTCTGAGGAGTCTACCTTCCTTCTGACCGACTGGCTGGG TACGTCCAGCCGTTGACCCCCCGTCTTGATCCCCTGTCCGGCAGCTTACCACTACAATAGCCCACACGCCCCGGT CCGTCGTCGGGGAAAACTTCCGACTCGATCCCGGTGTCTTCAAGAACCTGCCCCCACGCGAGAAGTTCATCTTCC GCGGCTCCAAGCCTGGATCCATCGATGAAGAGCGGCCTCAGGGCAAGCACGTCAAGCCGTCCAACTACCGCTTCA CTCACCGCATGCTCGATCAAAAGCCCAAGTACACGAGCGGTGGCCAGGTCCGCATTACCGACTCGGAAAACTTTG ATGTATCCAAGACGGTTTCCGCGGCGCACGTCATCATCGAGCCGGGCGCCCTGCGCGAGATGCATTGGCACCCGA CGGCCGACGAGTGGTCTTTCTTCATTCGCGGCCGGGCCCGCATCACCGTCTTTGCTGCTGAAGGCAACGCCCGCA CTTTCGACTACGTACCGGGCGATGTCGGTATTGTTCCCAAGAACATGGGTCATTTCGTCGAGAATATTGGTGACG AGCCCGTCGAAATGCTCGAGATCTTTCGCTCGGACCGATTCCGCGACTTTTCCCTCTTCCAGTGGATGGGCGAGA CGCCGCGCCGCTTGGTCGTCGACCACCTCTTCCAGCATGATGAAGAGGCCGGCCGCAAGTTTTTGGAGAAAATCA AGGATGCGGAAAAGGATGAGGTCAAGAAGCCGTGA |