Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1780
Gene name
Locationscaffold_168:29..1073
Strand+
Gene length (bp)1044
Transcript length (bp)1044
Coding sequence length (bp)1041
Protein length (aa) 347

Your browser does not support drawing a protein figure.

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 19 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 0.21 0.0 0.65
CcL In ants, during behavior modification 0.40 0.0 1.05
CcD In ants, recently dead 0.09 0.0 0.39

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 1.0 no
SC16a CcD 1.0 no
CcL CcD 1.0 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1780
MGLFALVLLSFFVLHAQGQSFSDQVANNFTQILKAQARINWDTPPYTETTFHDRRCGFFTFHPFSRILRRQLRRS
AYEMIDVQQDVIPQKRFLNLNHKSTPIRQDDALWVIQGDSDTWHAAATMKLGKVDISGGTVNSHFDQTMQISGRN
LEESCPGGHACHFEDWVYYAKWTGVCRTQVLNRKGDICQDVGAKQFEAKRSSCKGGRRNSLMLCKSRLKCAFRLP
IRDVSGKPLSTTVFIKESHIPPPVAIAVDKNCIFRLNNNRWYDSDYDIFWTRYDLYDDGTQRWVLRGEDEPVPLV
PDNLLGNCTLPPEGNIGKRDLMRSSSKGSRPVTVKIVGGFGYSESDY
Coding >Ophio5|1780
ATGGGACTCTTCGCTCTTGTTCTCCTCTCCTTTTTTGTTTTACATGCCCAAGGGCAGAGCTTTTCCGACCAAGTT
GCCAACAACTTCACGCAAATTCTAAAGGCCCAGGCCCGGATCAACTGGGATACACCGCCATATACAGAAACAACA
TTTCATGACAGACGATGCGGATTCTTCACTTTTCATCCTTTCTCGCGCATACTCCGCCGGCAGCTGAGACGTTCA
GCCTATGAGATGATTGATGTTCAACAAGACGTCATTCCACAGAAACGCTTCCTGAACCTCAATCACAAATCCACG
CCTATTCGACAAGATGATGCCCTGTGGGTTATTCAAGGAGACTCAGACACGTGGCACGCGGCAGCAACCATGAAA
TTGGGCAAGGTCGACATCTCTGGCGGCACAGTAAATTCGCATTTCGATCAAACGATGCAGATAAGCGGAAGAAAC
CTGGAGGAATCATGTCCTGGAGGCCACGCGTGTCACTTCGAAGACTGGGTCTACTATGCCAAATGGACTGGAGTG
TGTAGAACGCAGGTGCTGAACCGGAAGGGGGACATATGTCAAGATGTCGGCGCCAAGCAATTCGAAGCCAAGCGA
TCCTCGTGCAAGGGAGGAAGAAGAAATAGCCTCATGCTATGCAAATCACGACTCAAATGCGCTTTCCGTCTGCCC
ATCAGAGACGTGAGTGGGAAGCCACTAAGCACGACGGTGTTTATTAAAGAGAGTCACATCCCTCCGCCCGTCGCC
ATCGCAGTAGACAAGAACTGCATTTTCCGGCTGAACAACAACAGGTGGTACGACTCTGATTACGATATATTCTGG
ACTCGATATGACCTCTATGACGACGGCACTCAACGCTGGGTCCTTCGGGGCGAGGACGAACCGGTGCCATTGGTG
CCCGACAATCTCCTAGGCAACTGCACACTTCCACCCGAGGGCAATATTGGGAAGAGAGACTTGATGAGGTCTTCT
TCTAAAGGGTCGAGGCCGGTCACTGTCAAGATTGTCGGGGGGTTCGGGTACTCGGAGTCGGATTAT
Transcript >Ophio5|1780
ATGGGACTCTTCGCTCTTGTTCTCCTCTCCTTTTTTGTTTTACATGCCCAAGGGCAGAGCTTTTCCGACCAAGTT
GCCAACAACTTCACGCAAATTCTAAAGGCCCAGGCCCGGATCAACTGGGATACACCGCCATATACAGAAACAACA
TTTCATGACAGACGATGCGGATTCTTCACTTTTCATCCTTTCTCGCGCATACTCCGCCGGCAGCTGAGACGTTCA
GCCTATGAGATGATTGATGTTCAACAAGACGTCATTCCACAGAAACGCTTCCTGAACCTCAATCACAAATCCACG
CCTATTCGACAAGATGATGCCCTGTGGGTTATTCAAGGAGACTCAGACACGTGGCACGCGGCAGCAACCATGAAA
TTGGGCAAGGTCGACATCTCTGGCGGCACAGTAAATTCGCATTTCGATCAAACGATGCAGATAAGCGGAAGAAAC
CTGGAGGAATCATGTCCTGGAGGCCACGCGTGTCACTTCGAAGACTGGGTCTACTATGCCAAATGGACTGGAGTG
TGTAGAACGCAGGTGCTGAACCGGAAGGGGGACATATGTCAAGATGTCGGCGCCAAGCAATTCGAAGCCAAGCGA
TCCTCGTGCAAGGGAGGAAGAAGAAATAGCCTCATGCTATGCAAATCACGACTCAAATGCGCTTTCCGTCTGCCC
ATCAGAGACGTGAGTGGGAAGCCACTAAGCACGACGGTGTTTATTAAAGAGAGTCACATCCCTCCGCCCGTCGCC
ATCGCAGTAGACAAGAACTGCATTTTCCGGCTGAACAACAACAGGTGGTACGACTCTGATTACGATATATTCTGG
ACTCGATATGACCTCTATGACGACGGCACTCAACGCTGGGTCCTTCGGGGCGAGGACGAACCGGTGCCATTGGTG
CCCGACAATCTCCTAGGCAACTGCACACTTCCACCCGAGGGCAATATTGGGAAGAGAGACTTGATGAGGTCTTCT
TCTAAAGGGTCGAGGCCGGTCACTGTCAAGATTGTCGGGGGGTTCGGGTACTCGGAGTCGGATTATTGA
Gene >Ophio5|1780
ATGGGACTCTTCGCTCTTGTTCTCCTCTCCTTTTTTGTTTTACATGCCCAAGGGCAGAGCTTTTCCGACCAAGTT
GCCAACAACTTCACGCAAATTCTAAAGGCCCAGGCCCGGATCAACTGGGATACACCGCCATATACAGAAACAACA
TTTCATGACAGACGATGCGGATTCTTCACTTTTCATCCTTTCTCGCGCATACTCCGCCGGCAGCTGAGACGTTCA
GCCTATGAGATGATTGATGTTCAACAAGACGTCATTCCACAGAAACGCTTCCTGAACCTCAATCACAAATCCACG
CCTATTCGACAAGATGATGCCCTGTGGGTTATTCAAGGAGACTCAGACACGTGGCACGCGGCAGCAACCATGAAA
TTGGGCAAGGTCGACATCTCTGGCGGCACAGTAAATTCGCATTTCGATCAAACGATGCAGATAAGCGGAAGAAAC
CTGGAGGAATCATGTCCTGGAGGCCACGCGTGTCACTTCGAAGACTGGGTCTACTATGCCAAATGGACTGGAGTG
TGTAGAACGCAGGTGCTGAACCGGAAGGGGGACATATGTCAAGATGTCGGCGCCAAGCAATTCGAAGCCAAGCGA
TCCTCGTGCAAGGGAGGAAGAAGAAATAGCCTCATGCTATGCAAATCACGACTCAAATGCGCTTTCCGTCTGCCC
ATCAGAGACGTGAGTGGGAAGCCACTAAGCACGACGGTGTTTATTAAAGAGAGTCACATCCCTCCGCCCGTCGCC
ATCGCAGTAGACAAGAACTGCATTTTCCGGCTGAACAACAACAGGTGGTACGACTCTGATTACGATATATTCTGG
ACTCGATATGACCTCTATGACGACGGCACTCAACGCTGGGTCCTTCGGGGCGAGGACGAACCGGTGCCATTGGTG
CCCGACAATCTCCTAGGCAACTGCACACTTCCACCCGAGGGCAATATTGGGAAGAGAGACTTGATGAGGTCTTCT
TCTAAAGGGTCGAGGCCGGTCACTGTCAAGATTGTCGGGGGGTTCGGGTACTCGGAGTCGGATTATTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail