Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|1778
Gene name
Location	scaffold_167:34384..35062
Strand	-
Gene length (bp)	678
Transcript length (bp)	678
Coding sequence length (bp)	675
Protein length (aa)	225

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 21	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	12.20	3.55	20.84
CcL	In ants, during behavior modification	359.92	88.83	631.00
CcD	In ants, recently dead	123.28	65.18	181.39

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.000286	yes
SC16a	CcD	0.000286	yes
CcL	CcD	0.002815	yes

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|1778 MFPLVVLLLLGSSLLPWTQAKLDLGATIARIDPSTTSCASSGECRTAAQAGALLSTSFSRHGVRCRQEAACLTAL VLLETDHLKYQHNVYPGRPGQGTANMQMCRFNAEYAASDPVLRKCFPDVLPVGSDPNEDQCRRVLKCILDHEDKS FDTPAWFWDKKCPDKDARAKLSNGGIEGCAAYLKSCVGVDGNDQSRVALNRKAYDAFEVTNAKTCVPLDQDECQD
Coding	>Ophio5\|1778 ATGTTTCCCCTCGTCGTCCTCCTCCTTCTCGGTTCCTCTCTCCTCCCTTGGACGCAGGCAAAGCTAGACCTAGGC GCGACCATCGCCCGCATCGACCCGTCGACAACATCGTGCGCCAGCTCAGGAGAATGCCGGACGGCGGCCCAAGCC GGTGCCCTCTTGTCCACCTCCTTCTCCCGTCACGGCGTCCGATGTCGTCAGGAAGCCGCCTGTCTCACGGCTCTG GTCCTTCTCGAGACGGATCATCTCAAATATCAGCACAACGTCTATCCCGGTCGACCGGGTCAGGGAACGGCCAAT ATGCAAATGTGTCGTTTCAACGCAGAGTACGCGGCTTCGGATCCGGTCCTGCGTAAATGTTTCCCCGATGTCCTC CCCGTCGGCTCCGATCCGAATGAGGATCAGTGCAGGCGTGTGCTCAAGTGCATCCTCGATCACGAGGATAAGTCT TTCGATACCCCCGCTTGGTTCTGGGATAAGAAGTGTCCGGATAAGGATGCTCGTGCTAAGCTCAGCAACGGCGGC ATCGAGGGCTGCGCTGCCTATCTCAAGTCGTGTGTTGGTGTCGATGGCAACGATCAGAGTCGCGTCGCCCTCAAC CGCAAGGCGTACGATGCCTTCGAGGTGACGAATGCCAAGACTTGTGTTCCCCTCGACCAGGATGAGTGCCAGGAT
Transcript	>Ophio5\|1778 ATGTTTCCCCTCGTCGTCCTCCTCCTTCTCGGTTCCTCTCTCCTCCCTTGGACGCAGGCAAAGCTAGACCTAGGC GCGACCATCGCCCGCATCGACCCGTCGACAACATCGTGCGCCAGCTCAGGAGAATGCCGGACGGCGGCCCAAGCC GGTGCCCTCTTGTCCACCTCCTTCTCCCGTCACGGCGTCCGATGTCGTCAGGAAGCCGCCTGTCTCACGGCTCTG GTCCTTCTCGAGACGGATCATCTCAAATATCAGCACAACGTCTATCCCGGTCGACCGGGTCAGGGAACGGCCAAT ATGCAAATGTGTCGTTTCAACGCAGAGTACGCGGCTTCGGATCCGGTCCTGCGTAAATGTTTCCCCGATGTCCTC CCCGTCGGCTCCGATCCGAATGAGGATCAGTGCAGGCGTGTGCTCAAGTGCATCCTCGATCACGAGGATAAGTCT TTCGATACCCCCGCTTGGTTCTGGGATAAGAAGTGTCCGGATAAGGATGCTCGTGCTAAGCTCAGCAACGGCGGC ATCGAGGGCTGCGCTGCCTATCTCAAGTCGTGTGTTGGTGTCGATGGCAACGATCAGAGTCGCGTCGCCCTCAAC CGCAAGGCGTACGATGCCTTCGAGGTGACGAATGCCAAGACTTGTGTTCCCCTCGACCAGGATGAGTGCCAGGAT TGA
Gene	>Ophio5\|1778 ATGTTTCCCCTCGTCGTCCTCCTCCTTCTCGGTTCCTCTCTCCTCCCTTGGACGCAGGCAAAGCTAGACCTAGGC GCGACCATCGCCCGCATCGACCCGTCGACAACATCGTGCGCCAGCTCAGGAGAATGCCGGACGGCGGCCCAAGCC GGTGCCCTCTTGTCCACCTCCTTCTCCCGTCACGGCGTCCGATGTCGTCAGGAAGCCGCCTGTCTCACGGCTCTG GTCCTTCTCGAGACGGATCATCTCAAATATCAGCACAACGTCTATCCCGGTCGACCGGGTCAGGGAACGGCCAAT ATGCAAATGTGTCGTTTCAACGCAGAGTACGCGGCTTCGGATCCGGTCCTGCGTAAATGTTTCCCCGATGTCCTC CCCGTCGGCTCCGATCCGAATGAGGATCAGTGCAGGCGTGTGCTCAAGTGCATCCTCGATCACGAGGATAAGTCT TTCGATACCCCCGCTTGGTTCTGGGATAAGAAGTGTCCGGATAAGGATGCTCGTGCTAAGCTCAGCAACGGCGGC ATCGAGGGCTGCGCTGCCTATCTCAAGTCGTGTGTTGGTGTCGATGGCAACGATCAGAGTCGCGTCGCCCTCAAC CGCAAGGCGTACGATGCCTTCGAGGTGACGAATGCCAAGACTTGTGTTCCCCTCGACCAGGATGAGTGCCAGGAT TGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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