© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|1728 |
| Gene name | |
| Location | scaffold_164:33627..34614 |
| Strand | - |
| Gene length (bp) | 987 |
| Transcript length (bp) | 987 |
| Coding sequence length (bp) | 984 |
| Protein length (aa) | 328 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02089 | Palm_thioest | Palmitoyl protein thioesterase | 1.7E-84 | 46 | 300 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P50897|PPT1_HUMAN | Palmitoyl-protein thioesterase 1 OS=Homo sapiens GN=PPT1 PE=1 SV=1 | 43 | 317 | 7.0E-55 |
| sp|O88531|PPT1_MOUSE | Palmitoyl-protein thioesterase 1 OS=Mus musculus GN=Ppt1 PE=1 SV=2 | 43 | 303 | 2.0E-54 |
| sp|Q8HXW6|PPT1_MACFA | Palmitoyl-protein thioesterase 1 OS=Macaca fascicularis GN=PPT1 PE=2 SV=1 | 44 | 317 | 4.0E-54 |
| sp|P45478|PPT1_BOVIN | Palmitoyl-protein thioesterase 1 OS=Bos taurus GN=PPT1 PE=1 SV=1 | 43 | 303 | 7.0E-53 |
| sp|P45479|PPT1_RAT | Palmitoyl-protein thioesterase 1 OS=Rattus norvegicus GN=Ppt1 PE=1 SV=1 | 43 | 303 | 5.0E-52 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P50897|PPT1_HUMAN | Palmitoyl-protein thioesterase 1 OS=Homo sapiens GN=PPT1 PE=1 SV=1 | 43 | 317 | 7.0E-55 |
| sp|O88531|PPT1_MOUSE | Palmitoyl-protein thioesterase 1 OS=Mus musculus GN=Ppt1 PE=1 SV=2 | 43 | 303 | 2.0E-54 |
| sp|Q8HXW6|PPT1_MACFA | Palmitoyl-protein thioesterase 1 OS=Macaca fascicularis GN=PPT1 PE=2 SV=1 | 44 | 317 | 4.0E-54 |
| sp|P45478|PPT1_BOVIN | Palmitoyl-protein thioesterase 1 OS=Bos taurus GN=PPT1 PE=1 SV=1 | 43 | 303 | 7.0E-53 |
| sp|P45479|PPT1_RAT | Palmitoyl-protein thioesterase 1 OS=Rattus norvegicus GN=Ppt1 PE=1 SV=1 | 43 | 303 | 5.0E-52 |
| sp|Q20390|PPT1_CAEEL | Palmitoyl-protein thioesterase 1 OS=Caenorhabditis elegans GN=ppt-1 PE=2 SV=2 | 40 | 316 | 1.0E-50 |
| sp|Q9W3C7|PPT1_DROME | Palmitoyl-protein thioesterase 1 OS=Drosophila melanogaster GN=Ppt1 PE=1 SV=2 | 40 | 303 | 2.0E-41 |
| sp|Q54CM0|PPT3_DICDI | Palmitoyl-protein thioesterase 3 OS=Dictyostelium discoideum GN=ppt3 PE=3 SV=1 | 46 | 316 | 8.0E-37 |
| sp|O59747|PDF1_SCHPO | Palmitoyl-protein thioesterase-dolichyl pyrophosphate phosphatase fusion 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pdf1 PE=1 SV=2 | 41 | 303 | 1.0E-35 |
| sp|Q6GNY7|PPT2B_XENLA | Lysosomal thioesterase PPT2-B OS=Xenopus laevis GN=ppt2-b PE=2 SV=1 | 40 | 298 | 4.0E-13 |
| sp|Q9VKH6|PPT2_DROME | Lysosomal thioesterase PPT2 homolog OS=Drosophila melanogaster GN=Ppt2 PE=2 SV=1 | 46 | 291 | 8.0E-12 |
| sp|Q6PCJ9|PPT2A_XENLA | Lysosomal thioesterase PPT2-A OS=Xenopus laevis GN=ppt2-a PE=2 SV=1 | 46 | 298 | 3.0E-09 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 22 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 49.74 | 25.15 | 74.32 |
| CcL | In ants, during behavior modification | 45.18 | 22.42 | 67.94 |
| CcD | In ants, recently dead | 51.43 | 26.14 | 76.72 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.740531 | no |
| SC16a | CcD | 0.911074 | no |
| CcL | CcD | 0.645364 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1728 MAPRPPLLVALFLTLTSCATSSIIQLVSSGAKDGHPRDWTSTTPLPLLIWHGLGDNFASPGMEEIASVATSIHPD TLVYTISLGGQDASADRSATFFGNVSAQLEDVCKALANHSVLATAPAVDALGLSQGGQFMRGFVERCNVPPVRSL VTFGSQHNGIAQFKECAPMDWLCGAAMLLLKHNTWSNLVQSRLVPAQYFRDPTDYHSYLEHSNYLADINNERSVK NETYRANLASLTSFVLYMFDHDETVIPRETSWFAEVNGSDVVPLRERRLYTEDWLGLRKLDQKGALHFRSIAGDH MDIPSHVLNDTMAEFFGPLRISDAPGEL |
| Coding | >Ophio5|1728 ATGGCGCCGCGACCGCCCCTCCTCGTCGCCCTCTTTCTCACCCTCACCTCATGCGCAACCTCCTCCATCATCCAG CTCGTCAGCTCCGGGGCCAAAGACGGCCACCCACGAGACTGGACCTCGACGACGCCTCTTCCCCTACTGATCTGG CACGGTCTAGGCGATAACTTCGCCAGTCCCGGCATGGAAGAAATCGCCTCGGTCGCGACGTCGATTCATCCGGAC ACGCTCGTTTATACCATCAGCCTCGGCGGCCAAGACGCGAGCGCAGATCGATCGGCCACCTTCTTCGGAAACGTC TCCGCCCAGCTCGAAGACGTGTGCAAGGCGCTCGCAAACCATAGCGTATTGGCTACCGCGCCTGCCGTCGACGCC TTGGGACTTTCGCAGGGTGGCCAGTTTATGCGCGGCTTTGTTGAGCGCTGTAATGTGCCTCCTGTTCGCAGCCTC GTCACCTTCGGCAGTCAGCACAATGGCATCGCCCAGTTCAAGGAGTGCGCTCCCATGGATTGGCTTTGTGGTGCT GCCATGTTGCTCCTGAAGCATAATACGTGGAGTAACCTCGTTCAGAGCCGGCTCGTTCCCGCACAGTACTTTCGC GATCCGACTGATTATCACTCTTACCTCGAGCATTCCAACTATTTGGCTGATATCAACAACGAGCGATCCGTCAAG AACGAGACGTATCGCGCCAATCTTGCTAGCTTGACTAGCTTCGTCCTCTACATGTTCGATCACGACGAGACTGTT ATCCCCAGGGAGACGTCGTGGTTCGCCGAAGTCAACGGCTCTGATGTCGTGCCCCTGCGCGAGCGTCGCCTCTAT ACTGAAGATTGGCTGGGCTTGCGCAAGCTGGATCAAAAGGGCGCGCTGCATTTTAGGTCCATTGCAGGGGATCAC ATGGATATTCCAAGTCATGTTCTCAACGACACCATGGCCGAGTTCTTTGGGCCTTTGCGCATTTCCGATGCGCCC GGCGAGCTG |
| Transcript | >Ophio5|1728 ATGGCGCCGCGACCGCCCCTCCTCGTCGCCCTCTTTCTCACCCTCACCTCATGCGCAACCTCCTCCATCATCCAG CTCGTCAGCTCCGGGGCCAAAGACGGCCACCCACGAGACTGGACCTCGACGACGCCTCTTCCCCTACTGATCTGG CACGGTCTAGGCGATAACTTCGCCAGTCCCGGCATGGAAGAAATCGCCTCGGTCGCGACGTCGATTCATCCGGAC ACGCTCGTTTATACCATCAGCCTCGGCGGCCAAGACGCGAGCGCAGATCGATCGGCCACCTTCTTCGGAAACGTC TCCGCCCAGCTCGAAGACGTGTGCAAGGCGCTCGCAAACCATAGCGTATTGGCTACCGCGCCTGCCGTCGACGCC TTGGGACTTTCGCAGGGTGGCCAGTTTATGCGCGGCTTTGTTGAGCGCTGTAATGTGCCTCCTGTTCGCAGCCTC GTCACCTTCGGCAGTCAGCACAATGGCATCGCCCAGTTCAAGGAGTGCGCTCCCATGGATTGGCTTTGTGGTGCT GCCATGTTGCTCCTGAAGCATAATACGTGGAGTAACCTCGTTCAGAGCCGGCTCGTTCCCGCACAGTACTTTCGC GATCCGACTGATTATCACTCTTACCTCGAGCATTCCAACTATTTGGCTGATATCAACAACGAGCGATCCGTCAAG AACGAGACGTATCGCGCCAATCTTGCTAGCTTGACTAGCTTCGTCCTCTACATGTTCGATCACGACGAGACTGTT ATCCCCAGGGAGACGTCGTGGTTCGCCGAAGTCAACGGCTCTGATGTCGTGCCCCTGCGCGAGCGTCGCCTCTAT ACTGAAGATTGGCTGGGCTTGCGCAAGCTGGATCAAAAGGGCGCGCTGCATTTTAGGTCCATTGCAGGGGATCAC ATGGATATTCCAAGTCATGTTCTCAACGACACCATGGCCGAGTTCTTTGGGCCTTTGCGCATTTCCGATGCGCCC GGCGAGCTGTAA |
| Gene | >Ophio5|1728 ATGGCGCCGCGACCGCCCCTCCTCGTCGCCCTCTTTCTCACCCTCACCTCATGCGCAACCTCCTCCATCATCCAG CTCGTCAGCTCCGGGGCCAAAGACGGCCACCCACGAGACTGGACCTCGACGACGCCTCTTCCCCTACTGATCTGG CACGGTCTAGGCGATAACTTCGCCAGTCCCGGCATGGAAGAAATCGCCTCGGTCGCGACGTCGATTCATCCGGAC ACGCTCGTTTATACCATCAGCCTCGGCGGCCAAGACGCGAGCGCAGATCGATCGGCCACCTTCTTCGGAAACGTC TCCGCCCAGCTCGAAGACGTGTGCAAGGCGCTCGCAAACCATAGCGTATTGGCTACCGCGCCTGCCGTCGACGCC TTGGGACTTTCGCAGGGTGGCCAGTTTATGCGCGGCTTTGTTGAGCGCTGTAATGTGCCTCCTGTTCGCAGCCTC GTCACCTTCGGCAGTCAGCACAATGGCATCGCCCAGTTCAAGGAGTGCGCTCCCATGGATTGGCTTTGTGGTGCT GCCATGTTGCTCCTGAAGCATAATACGTGGAGTAACCTCGTTCAGAGCCGGCTCGTTCCCGCACAGTACTTTCGC GATCCGACTGATTATCACTCTTACCTCGAGCATTCCAACTATTTGGCTGATATCAACAACGAGCGATCCGTCAAG AACGAGACGTATCGCGCCAATCTTGCTAGCTTGACTAGCTTCGTCCTCTACATGTTCGATCACGACGAGACTGTT ATCCCCAGGGAGACGTCGTGGTTCGCCGAAGTCAACGGCTCTGATGTCGTGCCCCTGCGCGAGCGTCGCCTCTAT ACTGAAGATTGGCTGGGCTTGCGCAAGCTGGATCAAAAGGGCGCGCTGCATTTTAGGTCCATTGCAGGGGATCAC ATGGATATTCCAAGTCATGTTCTCAACGACACCATGGCCGAGTTCTTTGGGCCTTTGCGCATTTCCGATGCGCCC GGCGAGCTGTAA |