© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|1714 |
| Gene name | |
| Location | scaffold_163:29127..31781 |
| Strand | + |
| Gene length (bp) | 2654 |
| Transcript length (bp) | 2517 |
| Coding sequence length (bp) | 2514 |
| Protein length (aa) | 838 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00172 | Zn_clus | Fungal Zn(2)-Cys(6) binuclear cluster domain | 1.6E-05 | 144 | 179 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P08638|LEUR_YEAST | Regulatory protein LEU3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LEU3 PE=1 SV=1 | 136 | 709 | 5.0E-38 |
| sp|Q59UY7|SEF1_CANAL | Transcriptional regulatory protein SEF1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SEF1 PE=1 SV=1 | 145 | 740 | 1.0E-21 |
| sp|P87164|SEF1_KLULA | Putative transcription factor SEF1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SEF1 PE=3 SV=3 | 270 | 604 | 3.0E-15 |
| sp|Q74Z37|SEF1_ASHGO | Putative transcription factor SEF1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEF1 PE=3 SV=1 | 270 | 613 | 2.0E-13 |
| sp|P34228|SEF1_YEAST | Putative transcription factor SEF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEF1 PE=1 SV=4 | 270 | 628 | 3.0E-11 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | Yes |
| GO:0008150 | biological_process | No |
| GO:0051252 | regulation of RNA metabolic process | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0140110 | transcription regulator activity | No |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:0065007 | biological regulation | No |
| GO:0046872 | metal ion binding | No |
| GO:0010468 | regulation of gene expression | No |
| GO:0043167 | ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| GO:0005488 | binding | No |
| GO:0080090 | regulation of primary metabolic process | No |
| GO:0009889 | regulation of biosynthetic process | No |
| GO:0050789 | regulation of biological process | No |
| GO:0003700 | DNA-binding transcription factor activity | No |
| GO:1903506 | regulation of nucleic acid-templated transcription | No |
| GO:2001141 | regulation of RNA biosynthetic process | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0010556 | regulation of macromolecule biosynthetic process | No |
| GO:0031326 | regulation of cellular biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 45 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Fungal Specific TF |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 212.66 | 93.54 | 331.79 |
| CcL | In ants, during behavior modification | 185.10 | 43.44 | 326.76 |
| CcD | In ants, recently dead | 97.39 | 49.52 | 145.26 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.722478 | no |
| SC16a | CcD | 0.001647 | yes |
| CcL | CcD | 0.060076 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1714 MSPEPEVGAKIPTAAVSGRHRRLSAHAASTSPRRAVPSTSVSPRPPLAGAACGPDLGGICDGLSPTWSCRLGRMD GSSIVARGGAASMSPTSPASSRPKRKRSSGLVAADSSPGSGLDDDDDHDHHDDDHDHAADRKRQPGVKRACNECR QQKLRCDVVQEPFHSCSRCNRLKLACKIESNFKRVGKRSKHAEMEKEIDRLRRNVARARAQGFVVVDDDDEVDSP VAPSTATYSHTRNPSLMGSDEAVSSLLHLKRGGSYNLPPAFSHELDGVRLTDNDVTHLFNEFFAFYHPFLPFLSP QQPPDAYKQQHPLLFWSIVAVAARRFSPPDCPNLLTNLSGPMTRYLWTTIGEVPSNYHVVKAMCLLCTWPLPTST TTSDPTHILCGVMMKTATGIGLHRPNHIRDFSRVSVELNKEQLHDRVTTWAVCNIVAQNIGTGYGQPASTLYDWT LALRPGDDPALHLSRELEARLQIERFCDKVSKEMYSNASDPRGVAGDEHRAMLMRVYRRDFGELQASILSQQLGP ISSLHLRAAALHMRLAGFFDSSTTPGYIDDLMGLWRAATSFLDDILEVDKVTSPRDALGATTGGTILLYATNYLQ QMLVAAAFALLKLMRSFFCKTIDFDRGRSLFHHAIRSIRATSVVHNDLQWRLAELMVQMWNGARLDGNNCNNHGD DESPIPVDDSLQLKVRCRHSMSLVFDSVWRWREEYQAQGRGSLENTKQPTNPDSANEASPSSSQLDGTLMPSHVP PTSNPNSNSNSTANASNSNGNHLLGGNGALTPAGASGLSGGASGPNSMIGGGGLGYGDNGYDFFDPQHWMLDGLL DFNYSYVPPLEGA |
| Coding | >Ophio5|1714 ATGAGCCCTGAGCCTGAGGTTGGGGCCAAGATTCCGACCGCTGCAGTCTCTGGCCGCCATCGTCGTCTCTCCGCC CACGCCGCCAGCACATCTCCCAGGCGGGCCGTACCGAGTACTTCTGTCTCACCTCGGCCTCCGCTGGCTGGCGCG GCATGCGGCCCAGATCTGGGTGGTATCTGTGACGGCCTCTCCCCGACTTGGTCTTGTCGTCTTGGACGCATGGAC GGCTCTTCTATCGTCGCCCGCGGGGGGGCCGCTTCGATGAGCCCGACAAGCCCCGCCAGCTCTCGGCCCAAGCGC AAGCGCAGCAGCGGTCTGGTTGCCGCCGATAGCAGCCCCGGTAGCGGTCTGGACGACGACGACGATCACGATCAT CACGACGACGACCATGATCATGCTGCTGACCGCAAGCGCCAGCCGGGAGTCAAGCGGGCCTGTAACGAATGTCGC CAGCAAAAGCTCCGTTGCGATGTCGTCCAAGAACCCTTCCACAGCTGCTCTCGCTGCAACAGGCTCAAGCTCGCC TGCAAGATCGAGTCCAACTTCAAGCGCGTTGGTAAACGGTCCAAACACGCCGAGATGGAAAAGGAAATCGACCGG CTCCGGCGCAACGTCGCCCGCGCCCGCGCCCAGGGTTTCGTCGTCGTCGACGATGACGATGAGGTCGATTCGCCC GTGGCCCCGAGCACCGCCACCTACTCCCACACGCGCAACCCTTCCCTCATGGGCTCCGATGAGGCCGTCTCTTCT CTGCTGCACCTTAAGCGCGGCGGCTCCTACAACTTGCCTCCGGCCTTTTCGCACGAGCTCGACGGCGTACGGCTG ACGGACAACGACGTCACCCACCTGTTCAACGAGTTCTTCGCCTTCTACCACCCCTTTCTACCTTTCCTCAGCCCC CAGCAGCCGCCCGATGCCTACAAGCAGCAGCATCCGCTGCTCTTCTGGTCCATCGTCGCCGTCGCCGCCCGCCGC TTCAGCCCGCCCGACTGCCCCAACCTGCTCACCAACCTGTCCGGGCCCATGACGCGCTACCTGTGGACCACCATT GGCGAGGTTCCCAGCAATTATCACGTCGTCAAGGCCATGTGCCTGCTGTGCACCTGGCCCCTGCCCACGAGCACC ACCACGTCGGATCCCACCCACATCCTCTGCGGCGTCATGATGAAGACGGCCACCGGCATCGGCCTGCACCGCCCC AATCACATTCGCGACTTCTCGCGCGTATCCGTCGAGCTCAACAAGGAGCAGCTTCACGACCGAGTGACGACGTGG GCCGTCTGCAACATCGTCGCCCAGAACATCGGCACCGGCTATGGCCAACCCGCCTCTACCCTCTACGACTGGACC CTGGCTCTCCGGCCTGGCGACGACCCGGCCCTGCACCTTTCGCGCGAGCTCGAGGCTCGGCTCCAGATCGAGCGC TTCTGCGACAAGGTGTCCAAGGAGATGTACAGCAACGCGAGCGACCCGCGCGGCGTCGCCGGCGACGAGCACCGC GCCATGCTCATGCGCGTCTATCGCCGCGACTTTGGCGAGCTTCAGGCCTCGATCCTGTCGCAGCAGTTGGGGCCC ATCTCCTCGCTACATCTGCGCGCAGCTGCTCTTCATATGCGCCTCGCCGGTTTCTTCGACTCGAGCACCACGCCG GGCTACATCGACGACCTCATGGGCCTCTGGCGCGCTGCCACCAGCTTCCTCGACGACATCCTCGAGGTCGACAAG GTGACGTCGCCCCGAGACGCCCTGGGCGCTACCACGGGCGGCACCATCCTGCTCTACGCGACAAACTACCTTCAG CAGATGCTCGTCGCCGCCGCCTTTGCCCTGCTCAAGCTCATGCGCTCCTTTTTCTGCAAGACCATTGACTTTGAC CGCGGCCGCAGCCTCTTCCACCACGCTATCCGCTCCATCCGCGCCACCAGCGTCGTCCACAACGACCTGCAGTGG CGCCTGGCCGAGCTCATGGTCCAGATGTGGAACGGCGCCCGGCTCGACGGTAATAATTGCAACAATCACGGCGAC GACGAATCGCCCATCCCGGTCGACGACAGCCTGCAGCTCAAGGTGCGCTGCCGCCACAGCATGAGCCTCGTCTTC GATTCCGTCTGGCGATGGAGGGAGGAATATCAGGCTCAGGGTAGGGGCTCGCTCGAGAACACGAAGCAGCCGACG AACCCGGACTCGGCCAACGAGGCCTCACCGTCGTCTTCACAGCTTGACGGCACCCTGATGCCCTCTCACGTGCCT CCCACATCGAACCCCAATTCTAACAGCAACTCTACAGCCAACGCCAGCAATAGCAACGGCAACCACCTGCTCGGC GGCAACGGCGCCCTGACACCGGCCGGCGCCTCGGGCCTCTCCGGCGGCGCCTCGGGCCCCAATAGCATGATTGGC GGCGGCGGCCTCGGCTACGGCGACAACGGCTACGACTTTTTCGATCCGCAGCATTGGATGCTGGACGGTTTGCTC GATTTCAATTACTCTTATGTGCCGCCGCTCGAGGGAGCC |
| Transcript | >Ophio5|1714 ATGAGCCCTGAGCCTGAGGTTGGGGCCAAGATTCCGACCGCTGCAGTCTCTGGCCGCCATCGTCGTCTCTCCGCC CACGCCGCCAGCACATCTCCCAGGCGGGCCGTACCGAGTACTTCTGTCTCACCTCGGCCTCCGCTGGCTGGCGCG GCATGCGGCCCAGATCTGGGTGGTATCTGTGACGGCCTCTCCCCGACTTGGTCTTGTCGTCTTGGACGCATGGAC GGCTCTTCTATCGTCGCCCGCGGGGGGGCCGCTTCGATGAGCCCGACAAGCCCCGCCAGCTCTCGGCCCAAGCGC AAGCGCAGCAGCGGTCTGGTTGCCGCCGATAGCAGCCCCGGTAGCGGTCTGGACGACGACGACGATCACGATCAT CACGACGACGACCATGATCATGCTGCTGACCGCAAGCGCCAGCCGGGAGTCAAGCGGGCCTGTAACGAATGTCGC CAGCAAAAGCTCCGTTGCGATGTCGTCCAAGAACCCTTCCACAGCTGCTCTCGCTGCAACAGGCTCAAGCTCGCC TGCAAGATCGAGTCCAACTTCAAGCGCGTTGGTAAACGGTCCAAACACGCCGAGATGGAAAAGGAAATCGACCGG CTCCGGCGCAACGTCGCCCGCGCCCGCGCCCAGGGTTTCGTCGTCGTCGACGATGACGATGAGGTCGATTCGCCC GTGGCCCCGAGCACCGCCACCTACTCCCACACGCGCAACCCTTCCCTCATGGGCTCCGATGAGGCCGTCTCTTCT CTGCTGCACCTTAAGCGCGGCGGCTCCTACAACTTGCCTCCGGCCTTTTCGCACGAGCTCGACGGCGTACGGCTG ACGGACAACGACGTCACCCACCTGTTCAACGAGTTCTTCGCCTTCTACCACCCCTTTCTACCTTTCCTCAGCCCC CAGCAGCCGCCCGATGCCTACAAGCAGCAGCATCCGCTGCTCTTCTGGTCCATCGTCGCCGTCGCCGCCCGCCGC TTCAGCCCGCCCGACTGCCCCAACCTGCTCACCAACCTGTCCGGGCCCATGACGCGCTACCTGTGGACCACCATT GGCGAGGTTCCCAGCAATTATCACGTCGTCAAGGCCATGTGCCTGCTGTGCACCTGGCCCCTGCCCACGAGCACC ACCACGTCGGATCCCACCCACATCCTCTGCGGCGTCATGATGAAGACGGCCACCGGCATCGGCCTGCACCGCCCC AATCACATTCGCGACTTCTCGCGCGTATCCGTCGAGCTCAACAAGGAGCAGCTTCACGACCGAGTGACGACGTGG GCCGTCTGCAACATCGTCGCCCAGAACATCGGCACCGGCTATGGCCAACCCGCCTCTACCCTCTACGACTGGACC CTGGCTCTCCGGCCTGGCGACGACCCGGCCCTGCACCTTTCGCGCGAGCTCGAGGCTCGGCTCCAGATCGAGCGC TTCTGCGACAAGGTGTCCAAGGAGATGTACAGCAACGCGAGCGACCCGCGCGGCGTCGCCGGCGACGAGCACCGC GCCATGCTCATGCGCGTCTATCGCCGCGACTTTGGCGAGCTTCAGGCCTCGATCCTGTCGCAGCAGTTGGGGCCC ATCTCCTCGCTACATCTGCGCGCAGCTGCTCTTCATATGCGCCTCGCCGGTTTCTTCGACTCGAGCACCACGCCG GGCTACATCGACGACCTCATGGGCCTCTGGCGCGCTGCCACCAGCTTCCTCGACGACATCCTCGAGGTCGACAAG GTGACGTCGCCCCGAGACGCCCTGGGCGCTACCACGGGCGGCACCATCCTGCTCTACGCGACAAACTACCTTCAG CAGATGCTCGTCGCCGCCGCCTTTGCCCTGCTCAAGCTCATGCGCTCCTTTTTCTGCAAGACCATTGACTTTGAC CGCGGCCGCAGCCTCTTCCACCACGCTATCCGCTCCATCCGCGCCACCAGCGTCGTCCACAACGACCTGCAGTGG CGCCTGGCCGAGCTCATGGTCCAGATGTGGAACGGCGCCCGGCTCGACGGTAATAATTGCAACAATCACGGCGAC GACGAATCGCCCATCCCGGTCGACGACAGCCTGCAGCTCAAGGTGCGCTGCCGCCACAGCATGAGCCTCGTCTTC GATTCCGTCTGGCGATGGAGGGAGGAATATCAGGCTCAGGGTAGGGGCTCGCTCGAGAACACGAAGCAGCCGACG AACCCGGACTCGGCCAACGAGGCCTCACCGTCGTCTTCACAGCTTGACGGCACCCTGATGCCCTCTCACGTGCCT CCCACATCGAACCCCAATTCTAACAGCAACTCTACAGCCAACGCCAGCAATAGCAACGGCAACCACCTGCTCGGC GGCAACGGCGCCCTGACACCGGCCGGCGCCTCGGGCCTCTCCGGCGGCGCCTCGGGCCCCAATAGCATGATTGGC GGCGGCGGCCTCGGCTACGGCGACAACGGCTACGACTTTTTCGATCCGCAGCATTGGATGCTGGACGGTTTGCTC GATTTCAATTACTCTTATGTGCCGCCGCTCGAGGGAGCCTAG |
| Gene | >Ophio5|1714 ATGAGCCCTGAGCCTGAGGTTGGGGCCAAGATTCCGACCGCTGCAGTCTCTGGCCGCCATCGTCGTCTCTCCGCC CACGCCGCCAGCACATCTCCCAGGCGGGCCGTACCGAGTACTTCTGTCTCACCTCGGCCTCCGCTGGCTGGCGCG GCATGCGGCCCAGATCTGGGTGGTATCTGTGACGGCCTCTCCCCGACTTGGTCTTGTCGTCTTGGACGCATGGAC GGCTCTTCTATCGTCGCCCGCGGGGGGGCCGCTTCGATGAGCCCGACAAGCCCCGCCAGCTCTCGGCCCAAGCGC AAGCGCAGCAGCGGTCTGGTTGCCGCCGATAGCAGCCCCGGTAGCGGTCTGGACGACGACGACGATCACGATCAT CACGACGACGACCATGATCATGCTGCTGACCGCAAGCGCCAGCCGGGAGTCAAGCGGGCCTGTAACGAATGTCGC CAGCAAAAGGCGAGTCTCTCCTGTTCTCCTACATCTCCTCCCACTGACGGACGACTGACCTCCCTTGATAGCTCC GTTGCGATGTCGTCCAAGAACCCTTCCACAGCTGCTCTCGCTGCAACAGGCTCAAGCTCGCCTGCAAGATCGAGT CCAACTTCAAGCGCGTTGGTAAACGGTCCAAACACGCCGAGATGGAAAAGGAAATCGACCGGCTCCGGCGCAACG TCGCCCGCGCCCGCGCCCAGGGTTTCGTCGTCGTCGACGATGACGATGAGGTCGATTCGCCCGTGGCCCCGAGCA CCGCCACCTACTCCCACACGCGCAACCCTTCCCTCATGGGCTCCGATGAGGCCGTCTCTTCTCTGCTGCACCTTA AGCGCGGCGGCTCCTACAACTTGCCTCCGGCCTTTTCGCACGAGCTCGACGGCGTACGGCTGACGGACAACGACG TCACCCACCTGTTCAACGAGTTCTTCGCCTTCTACCACCCCTTTCTACCTTTCCTCAGCCCCCAGCAGCCGCCCG ATGCCTACAAGCAGCAGCATCCGCTGCTCTTCTGGTCCATCGTCGCCGTCGCCGCCCGCCGCTTCAGCCCGCCCG ACTGCCCCAACCTGCTCACCAACCTGTCCGGGCCCATGACGCGCTACCTGTGGACCACCATTGGCGAGGTTCCCA GCAATTATCACGTCGTCAAGGCCATGTGCCTGCTGTGCACCTGGCCCCTGCCCACGAGCACCACCACGTCGGATC CCACCCACATCCTCTGCGGCGTCATGATGAAGACGGCCACCGGCATCGGCCTGCACCGCCCCAATCACATTCGCG ACTTCTCGCGCGTATCCGTCGAGCTCAACAAGGAGCAGCTTCACGACCGAGTGACGACGTGGGCCGTCTGCAACA TCGTCGCCCAGAACATCGGCACCGGCTATGGCCAACCCGCCTCTACCCTCTACGACTGGACCCTGGCTCTCCGGC CTGGCGACGACCCGGCCCTGCACCTTTCGCGCGAGCTCGAGGCTCGGCTCCAGATCGAGCGCTTCTGCGACAAGG TGTCCAAGGAGATGTACAGCAACGCGAGCGACCCGCGCGGCGTCGCCGGCGACGAGCACCGCGCCATGCTCATGC GCGTCTATCGCCGCGACTTTGGCGAGCTTCAGGCCTCGATCCTGTCGCAGCAGTTGGGGCCCATCTCCTCGCTAC ATCTGCGCGCAGCTGCTCTTCATATGCGCCTCGCCGGTTTCTTCGACTCGAGCACCACGCCGGGCTACATCGACG ACCTCATGGGCCTCTGGCGCGCTGCCACCAGCTTCCTCGACGACATCCTCGAGGTCGACAAGGTGACGTCGCCCC GAGACGCCCTGGGCGCTACCACGGGCGGCACCATCCTGCTCTACGCGACAAACTACCTTCAGCAGATGCTCGTCG CCGCCGCCTTTGCCCTGCTCAAGCTCATGCGCTCCTTTTTCTGCAAGACCATTGACTTTGACCGCGGCCGCAGCC TCTTCCACCACGCTATCCGCTCCATCCGCGCCACCAGCGTCGTCCACAACGACCTGCAGTGGCGCCTGGCCGAGC TCATGGTCCAGATGTGGAACGGCGCCCGGCTCGACGGTAATAATTGCAACAATCACGGCGACGACGAATCGCCCA TCCCGGTCGACGACAGCCTGCAGCTCAAGGTGCGCTGCCGCCACAGCATGAGCCTCGTCTTCGATTCCGTCTGGC GATGGAGGGAGGAATATCAGGCTCAGGGTAGGGGCTCGCTCGAGAGTGAGTTGATGGGGCCTGCCGCTTGGCCTA CCATCAGAGTACTCGCCGCTGACTACCTCATTTTGCTCTTACCAGACACGAAGCAGCCGACGAACCCGGACTCGG CCAACGAGGCCTCACCGTCGTCTTCACAGCTTGACGGCACCCTGATGCCCTCTCACGTGCCTCCCACATCGAACC CCAATTCTAACAGCAACTCTACAGCCAACGCCAGCAATAGCAACGGCAACCACCTGCTCGGCGGCAACGGCGCCC TGACACCGGCCGGCGCCTCGGGCCTCTCCGGCGGCGCCTCGGGCCCCAATAGCATGATTGGCGGCGGCGGCCTCG GCTACGGCGACAACGGCTACGACTTTTTCGATCCGCAGCATTGGATGCTGGACGGTTTGCTCGATTTCAATTACT CTTATGTGCCGCCGCTCGAGGGAGCCTAG |