Protein ID | Ophio5|1705 |
Gene name | |
Location | scaffold_163:9299..10370 |
Strand | - |
Gene length (bp) | 1071 |
Transcript length (bp) | 1071 |
Coding sequence length (bp) | 1068 |
Protein length (aa) | 356 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF04488 | Gly_transf_sug | Glycosyltransferase sugar-binding region containing DXD motif | 1.9E-10 | 144 | 202 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Golgi apparatus | Signal peptide|Transmembrane domain | 0.1624 | 0.1481 | 0.1535 | 0.2798 | 0.1276 | 0.0159 | 0.6094 | 0.1657 | 0.7928 | 0.0107 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 12 | 31 | 19 |
Orthofinder run ID | 4 |
Orthogroup | 201 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|1705 MTVSRARRKIRLLFIIVTSFLLINCFGILYIDGSIHDYLLELVRPTWFYVTGLTRYNFRPTTLEQACFNGSATRI NAPGLPEAIPRVVHFITGVDRPNPITLITWLAVRAVAANLGPDVEIRLHHVFLSEDGPWWPEVRDRVTLVRHEPS FLDGFSGIKPPPPEWHPAHKADILRLQILSDHGGIYLDADVILLRPLDTLLSGRRDVIMGYEGGHRQGMCNAVIL AKKGAPFLQRWYSLYDYFDPSLWNYHSVMLPAKLAAAYPDDICPLSPEAFFWPLWTDDQKAWMHRKLDRDEADEV AAAMERNGGALFPGQLAYHATGSAKHMRNPTPHGILTEDTRFNMLVRRYIDAKKET |
Coding | >Ophio5|1705 ATGACAGTCTCTCGGGCACGGCGCAAGATCCGCCTCCTCTTTATCATTGTCACAAGCTTCCTCCTCATCAATTGC TTCGGCATTCTCTACATCGACGGGAGTATACACGATTACTTGCTCGAACTCGTTCGTCCGACTTGGTTTTACGTC ACTGGCCTGACGCGATATAACTTTCGGCCAACAACCTTAGAGCAGGCGTGCTTCAATGGCTCTGCAACACGTATC AACGCCCCGGGCCTGCCCGAGGCAATCCCAAGGGTAGTCCACTTCATCACCGGTGTTGACAGACCCAACCCCATC ACCCTCATTACATGGCTTGCTGTGCGAGCCGTCGCAGCCAATTTGGGCCCAGATGTCGAGATCCGCCTTCACCAT GTATTCTTGAGCGAAGACGGCCCCTGGTGGCCAGAAGTTCGAGACCGCGTCACCCTGGTGCGGCACGAGCCAAGC TTTCTCGACGGCTTTTCTGGCATTAAGCCGCCGCCCCCCGAGTGGCATCCCGCCCACAAGGCAGACATTCTACGG CTACAGATTCTTTCCGACCACGGCGGCATCTACCTCGACGCCGACGTCATCCTGCTTCGCCCACTCGACACCCTA CTGAGCGGCCGCCGCGACGTCATTATGGGCTATGAAGGTGGCCATCGTCAAGGCATGTGCAACGCCGTCATACTG GCAAAGAAAGGGGCCCCTTTCCTTCAACGATGGTACAGTCTCTACGATTACTTCGATCCCAGCCTTTGGAACTAC CACTCGGTCATGCTGCCGGCCAAGCTCGCCGCCGCTTATCCAGACGACATCTGCCCGCTGTCGCCCGAGGCCTTC TTCTGGCCCCTATGGACCGACGACCAAAAGGCTTGGATGCATAGGAAATTGGATCGCGACGAGGCCGACGAGGTA GCGGCTGCCATGGAGCGCAATGGCGGTGCTCTCTTCCCCGGGCAGCTCGCCTATCACGCAACGGGGTCCGCAAAG CACATGAGGAATCCGACACCTCATGGCATTCTCACGGAAGATACGAGATTCAATATGCTGGTTCGACGATATATC GACGCAAAGAAGGAGACA |
Transcript | >Ophio5|1705 ATGACAGTCTCTCGGGCACGGCGCAAGATCCGCCTCCTCTTTATCATTGTCACAAGCTTCCTCCTCATCAATTGC TTCGGCATTCTCTACATCGACGGGAGTATACACGATTACTTGCTCGAACTCGTTCGTCCGACTTGGTTTTACGTC ACTGGCCTGACGCGATATAACTTTCGGCCAACAACCTTAGAGCAGGCGTGCTTCAATGGCTCTGCAACACGTATC AACGCCCCGGGCCTGCCCGAGGCAATCCCAAGGGTAGTCCACTTCATCACCGGTGTTGACAGACCCAACCCCATC ACCCTCATTACATGGCTTGCTGTGCGAGCCGTCGCAGCCAATTTGGGCCCAGATGTCGAGATCCGCCTTCACCAT GTATTCTTGAGCGAAGACGGCCCCTGGTGGCCAGAAGTTCGAGACCGCGTCACCCTGGTGCGGCACGAGCCAAGC TTTCTCGACGGCTTTTCTGGCATTAAGCCGCCGCCCCCCGAGTGGCATCCCGCCCACAAGGCAGACATTCTACGG CTACAGATTCTTTCCGACCACGGCGGCATCTACCTCGACGCCGACGTCATCCTGCTTCGCCCACTCGACACCCTA CTGAGCGGCCGCCGCGACGTCATTATGGGCTATGAAGGTGGCCATCGTCAAGGCATGTGCAACGCCGTCATACTG GCAAAGAAAGGGGCCCCTTTCCTTCAACGATGGTACAGTCTCTACGATTACTTCGATCCCAGCCTTTGGAACTAC CACTCGGTCATGCTGCCGGCCAAGCTCGCCGCCGCTTATCCAGACGACATCTGCCCGCTGTCGCCCGAGGCCTTC TTCTGGCCCCTATGGACCGACGACCAAAAGGCTTGGATGCATAGGAAATTGGATCGCGACGAGGCCGACGAGGTA GCGGCTGCCATGGAGCGCAATGGCGGTGCTCTCTTCCCCGGGCAGCTCGCCTATCACGCAACGGGGTCCGCAAAG CACATGAGGAATCCGACACCTCATGGCATTCTCACGGAAGATACGAGATTCAATATGCTGGTTCGACGATATATC GACGCAAAGAAGGAGACATAA |
Gene | >Ophio5|1705 ATGACAGTCTCTCGGGCACGGCGCAAGATCCGCCTCCTCTTTATCATTGTCACAAGCTTCCTCCTCATCAATTGC TTCGGCATTCTCTACATCGACGGGAGTATACACGATTACTTGCTCGAACTCGTTCGTCCGACTTGGTTTTACGTC ACTGGCCTGACGCGATATAACTTTCGGCCAACAACCTTAGAGCAGGCGTGCTTCAATGGCTCTGCAACACGTATC AACGCCCCGGGCCTGCCCGAGGCAATCCCAAGGGTAGTCCACTTCATCACCGGTGTTGACAGACCCAACCCCATC ACCCTCATTACATGGCTTGCTGTGCGAGCCGTCGCAGCCAATTTGGGCCCAGATGTCGAGATCCGCCTTCACCAT GTATTCTTGAGCGAAGACGGCCCCTGGTGGCCAGAAGTTCGAGACCGCGTCACCCTGGTGCGGCACGAGCCAAGC TTTCTCGACGGCTTTTCTGGCATTAAGCCGCCGCCCCCCGAGTGGCATCCCGCCCACAAGGCAGACATTCTACGG CTACAGATTCTTTCCGACCACGGCGGCATCTACCTCGACGCCGACGTCATCCTGCTTCGCCCACTCGACACCCTA CTGAGCGGCCGCCGCGACGTCATTATGGGCTATGAAGGTGGCCATCGTCAAGGCATGTGCAACGCCGTCATACTG GCAAAGAAAGGGGCCCCTTTCCTTCAACGATGGTACAGTCTCTACGATTACTTCGATCCCAGCCTTTGGAACTAC CACTCGGTCATGCTGCCGGCCAAGCTCGCCGCCGCTTATCCAGACGACATCTGCCCGCTGTCGCCCGAGGCCTTC TTCTGGCCCCTATGGACCGACGACCAAAAGGCTTGGATGCATAGGAAATTGGATCGCGACGAGGCCGACGAGGTA GCGGCTGCCATGGAGCGCAATGGCGGTGCTCTCTTCCCCGGGCAGCTCGCCTATCACGCAACGGGGTCCGCAAAG CACATGAGGAATCCGACACCTCATGGCATTCTCACGGAAGATACGAGATTCAATATGCTGGTTCGACGATATATC GACGCAAAGAAGGAGACATAA |