Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1703
Gene name
Locationscaffold_163:4195..6087
Strand+
Gene length (bp)1892
Transcript length (bp)1335
Coding sequence length (bp)1332
Protein length (aa) 444

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PFAM Domains

(None)

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O13938|YEP4_SCHPO UPF0658 Golgi apparatus membrane protein C23H3.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC23H3.04 PE=3 SV=3 104 414 1.0E-47
sp|Q9UUJ8|YLOA_SCHPO UPF0658 Golgi apparatus membrane protein C1952.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1952.10c PE=3 SV=1 106 444 8.0E-28

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 16 0.45

Transmembrane Domains

Domain # Start End Length
1 109 131 22
2 155 174 19
3 181 203 22
4 235 257 22
5 283 305 22
6 315 334 19
7 341 359 18
8 379 401 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1703
MPRKKQKKKRRNHALSPFRLPLSRPACGYFFLIDDDDDNSPLTPGRSRPVARPGYQALLVRPKLKPAYAENANLN
AGFDQGYAYRQGFAPSTPARSVYRDRMSFLKSKWPAAFMAVTSLQAIVCLAFESFVFARFQSSLGRWVDKLSVQS
QYKTIPTFLTLIIFGFLYELVVVWDALRMKNTIQVIGVCIANLALLVYTAIQVDQIQMAINTLGAEALKPGITPE
EVWANVRPFLVAIPAIIALATAAMVFIAWKLYQEFAWDILKNIGADYRMKKRFLHYQIYIALLKFDFFFFLGFII
QFVVIVAQKTDPEFALTIATIPITICILLAAAYFTRRENKLGMMAVIILYLGGLIYFIFKLVRIYQPEYRLFYLP
VRKSLTAFAVITILLILLTIANAIICMRNFDKGLKAHLLSPRRMDEKPDAHSISLHDVKPQIPSRMTID
Coding >Ophio5|1703
ATGCCTAGGAAGAAGCAAAAAAAGAAAAGGCGCAACCACGCCCTTTCACCCTTCCGTCTTCCCCTCTCTCGCCCT
GCGTGCGGATACTTCTTCCTCATCGACGACGACGACGACAACTCTCCGTTGACTCCCGGTCGGAGTCGCCCAGTC
GCCCGTCCTGGCTACCAGGCCCTCCTCGTTCGACCAAAACTCAAACCCGCCTACGCGGAGAATGCGAATCTAAAC
GCTGGCTTCGACCAGGGCTACGCCTATCGCCAAGGCTTCGCCCCTTCCACACCGGCGAGGAGCGTCTATCGCGAC
AGGATGAGCTTCCTCAAGTCCAAATGGCCCGCCGCCTTCATGGCTGTCACCAGCCTCCAGGCCATTGTCTGCTTG
GCATTCGAGTCATTCGTCTTTGCGCGCTTCCAATCCAGTCTCGGCCGCTGGGTCGATAAGCTTTCCGTCCAGTCC
CAATACAAGACGATCCCGACTTTCCTGACCCTCATCATCTTCGGCTTCCTGTATGAACTGGTCGTCGTCTGGGAT
GCGTTGCGCATGAAGAACACCATTCAGGTCATTGGCGTCTGCATCGCTAATCTGGCCTTGCTCGTCTACACCGCC
ATCCAGGTCGACCAGATCCAGATGGCCATCAACACCCTCGGCGCCGAGGCCCTTAAACCCGGCATCACTCCCGAA
GAGGTCTGGGCCAACGTCAGGCCCTTCCTTGTCGCCATCCCGGCCATCATTGCCCTGGCCACCGCCGCCATGGTC
TTTATCGCCTGGAAGCTCTACCAGGAGTTCGCCTGGGATATCCTCAAAAACATTGGCGCTGACTATCGCATGAAG
AAGCGTTTCCTCCATTACCAGATTTACATCGCACTGCTCAAGTTCGACTTCTTCTTCTTCCTCGGCTTCATCATC
CAGTTCGTCGTCATCGTCGCCCAAAAGACGGATCCCGAGTTCGCCCTGACCATCGCCACCATCCCCATCACCATC
TGCATTCTCCTCGCCGCTGCCTACTTCACCCGCCGCGAGAATAAGCTGGGCATGATGGCTGTCATAATCCTCTAC
CTGGGCGGACTCATATACTTCATCTTCAAGCTCGTCCGCATCTACCAGCCCGAATACAGGCTCTTCTACTTGCCC
GTGCGCAAATCTCTCACCGCCTTCGCCGTCATCACCATCCTATTGATTCTACTCACCATTGCAAACGCCATCATC
TGCATGCGCAACTTCGACAAGGGCCTCAAGGCCCACTTGCTGTCCCCGCGCCGAATGGACGAGAAGCCCGACGCT
CATTCCATCAGCCTGCACGACGTCAAGCCGCAAATTCCCAGTCGGATGACCATCGAC
Transcript >Ophio5|1703
ATGCCTAGGAAGAAGCAAAAAAAGAAAAGGCGCAACCACGCCCTTTCACCCTTCCGTCTTCCCCTCTCTCGCCCT
GCGTGCGGATACTTCTTCCTCATCGACGACGACGACGACAACTCTCCGTTGACTCCCGGTCGGAGTCGCCCAGTC
GCCCGTCCTGGCTACCAGGCCCTCCTCGTTCGACCAAAACTCAAACCCGCCTACGCGGAGAATGCGAATCTAAAC
GCTGGCTTCGACCAGGGCTACGCCTATCGCCAAGGCTTCGCCCCTTCCACACCGGCGAGGAGCGTCTATCGCGAC
AGGATGAGCTTCCTCAAGTCCAAATGGCCCGCCGCCTTCATGGCTGTCACCAGCCTCCAGGCCATTGTCTGCTTG
GCATTCGAGTCATTCGTCTTTGCGCGCTTCCAATCCAGTCTCGGCCGCTGGGTCGATAAGCTTTCCGTCCAGTCC
CAATACAAGACGATCCCGACTTTCCTGACCCTCATCATCTTCGGCTTCCTGTATGAACTGGTCGTCGTCTGGGAT
GCGTTGCGCATGAAGAACACCATTCAGGTCATTGGCGTCTGCATCGCTAATCTGGCCTTGCTCGTCTACACCGCC
ATCCAGGTCGACCAGATCCAGATGGCCATCAACACCCTCGGCGCCGAGGCCCTTAAACCCGGCATCACTCCCGAA
GAGGTCTGGGCCAACGTCAGGCCCTTCCTTGTCGCCATCCCGGCCATCATTGCCCTGGCCACCGCCGCCATGGTC
TTTATCGCCTGGAAGCTCTACCAGGAGTTCGCCTGGGATATCCTCAAAAACATTGGCGCTGACTATCGCATGAAG
AAGCGTTTCCTCCATTACCAGATTTACATCGCACTGCTCAAGTTCGACTTCTTCTTCTTCCTCGGCTTCATCATC
CAGTTCGTCGTCATCGTCGCCCAAAAGACGGATCCCGAGTTCGCCCTGACCATCGCCACCATCCCCATCACCATC
TGCATTCTCCTCGCCGCTGCCTACTTCACCCGCCGCGAGAATAAGCTGGGCATGATGGCTGTCATAATCCTCTAC
CTGGGCGGACTCATATACTTCATCTTCAAGCTCGTCCGCATCTACCAGCCCGAATACAGGCTCTTCTACTTGCCC
GTGCGCAAATCTCTCACCGCCTTCGCCGTCATCACCATCCTATTGATTCTACTCACCATTGCAAACGCCATCATC
TGCATGCGCAACTTCGACAAGGGCCTCAAGGCCCACTTGCTGTCCCCGCGCCGAATGGACGAGAAGCCCGACGCT
CATTCCATCAGCCTGCACGACGTCAAGCCGCAAATTCCCAGTCGGATGACCATCGACTGA
Gene >Ophio5|1703
ATGCCTAGGGTTTAGATACGTTACCTCGCACCGTGCTCCGTACAACATCATCACGCGCCCGTTCCGCTTCTCCTG
AGCCACCCCTTCTCTAGTCCTCCTCCTCCGCTTCCTATTCCTATACTCACCATCTCCTTTCACCTTTGCTTCACC
TTGATCCCTCTCCTCATCCGACCTCTTCCTCCAGTCTCTCGTTCAGTAGCAGCCTCGGCATTTACCGTTCCTCTA
ATTCCTCCCTGCCTTCGCGCCGCGTCTTCGCCACCGAGCCATCATCAACAGGAGAAAGCAGACCGTCCCTAAAAA
TAAACCAGCACCAAAGAAGAAGCAAAAAAAGAAAAGGCGCAACCACGCCCTTTCACCCTTCCGTCTTCCCCTCTC
TCGCCCTGCGTGCGGATACTTCTTCCTCATCGACGACGACGACGACAACTCTCCGTTGACTCCCGGTCGGAGTCG
CCCAGTCGCCCGTCCTGGCTACCAGGTTAGAGACTTGAGCCACCCCTCCCCTCTCCCTCTCCTTCGCCCAGCCGC
CAATCAATTGCTCACATCTCAGCGCTCGTCACAGGCCCTCCTCGTTCGACCAAAACTCAAAGTACTCGCGCGAAT
TCGGCCAGGCTTATCCTCAGCCCGCATACTCACAGCCCGCCTACGCGGAGAATGCGAATCTAAACGCTGGCTTCG
ACCAGGGCTACGCCTATCGCCAAGGCTTCGCCCCTTCCACACCGGCGAGGAGCGTCTATCGCGACAGGATGAGCT
TCCTCAAGTCCAAATGGCCCGCCGCCTTCATGGCTGTCACCAGCCTCCAGGCCATTGTCTGCTTGGCATTCGAGT
CGTACGTCCCGCCGCCGCCGCATTCGACGCCCGCTTACCATTTGTCCCCTCTTAGATTCGTCTTTGCGCGCTTCC
AATCCAGTCTCGGCCGCTGGGTCGATAAGCTTTCCGTCCAGTCCCAATACAAGACGATCCCGACTTTCCTGACCC
TCATCATCTTCGGCTTCCTGTATGAACTGGTCGTCGTCTGGGATGCGTTGCGCATGAAGAACACCATTCAGGTCA
TTGGCGTCTGCATCGCTAATCTGGCCTTGCTCGTCTACACCGCCATCCAGGTCGACCAGATCCAGATGGCCATCA
ACACCCTCGGCGCCGAGGCCCTTAAACCCGGCATCACTCCCGAAGAGGTCTGGGCCAACGTCAGGCCCTTCCTTG
TCGCCATCCCGGCCATCATTGCCCTGGCCACCGCCGCCATGGTCTTTATCGCCTGGAAGCTCTACCAGGAGTTCG
CCTGGGATATCCTCAAAAACATTGGCGCTGACTATCGCATGAAGAAGCGTTTCCTCCATTACCAGGTCCGTGGCA
CATACGAGCGCCTGTCGCTGCCAAGACGCTAATATCTCCTCCCCCCCTTTCAGATTTACATCGCACTGCTCAAGT
TCGACTTCTTCTTCTTCCTCGGCTTCATCATCCAGTTCGTCGTCATCGTCGCCCAAAAGACGGATCCCGAGTTCG
CCCTGACCATCGCCACCATCCCCATCACCATCTGCATTCTCCTCGCCGCTGCCTACTTCACCCGCCGCGAGAATA
AGCTGGGCATGATGGCTGTCATAATCCTCTACCTGGGCGGACTCATATACTTCATCTTCAAGCTCGTCCGCATCT
ACCAGCCCGAATACAGGCTCTTCTACTTGCCCGTGCGCAAATCTCTCACCGCCTTCGCCGTCATCACCATCCTAT
TGATTCTACTCACCATTGCAAACGCCATCATCTGCATGCGCAACTTCGACAAGGGCCTCAAGGCCCACTTGCTGT
CCCCGCGCCGAATGGACGAGAAGCCCGACGCTCATTCCATCAGCCTGCACGACGTCAAGCCGCAAATTCCCAGTC
GGATGACCATCGACTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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