© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|1668 |
| Gene name | |
| Location | scaffold_161:1004..1589 |
| Strand | + |
| Gene length (bp) | 585 |
| Transcript length (bp) | 516 |
| Coding sequence length (bp) | 513 |
| Protein length (aa) | 171 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03694 | Erg28 | Erg28 like protein | 8.2E-43 | 15 | 158 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P40030|ERG28_YEAST | Ergosterol biosynthetic protein 28 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERG28 PE=1 SV=1 | 12 | 167 | 1.0E-23 |
| sp|Q9ERY9|ERG28_MOUSE | Probable ergosterol biosynthetic protein 28 OS=Mus musculus GN=ORF11 PE=2 SV=1 | 82 | 170 | 3.0E-16 |
| sp|Q5R589|ERG28_PONAB | Probable ergosterol biosynthetic protein 28 OS=Pongo abelii PE=2 SV=1 | 82 | 169 | 1.0E-15 |
| sp|Q9UKR5|ERG28_HUMAN | Probable ergosterol biosynthetic protein 28 OS=Homo sapiens GN=C14orf1 PE=1 SV=1 | 82 | 169 | 1.0E-15 |
| sp|O74820|ERG28_SCHPO | Ergosterol biosynthetic protein 28 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg28 PE=3 SV=1 | 6 | 161 | 3.0E-13 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 31 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
| 2 | 105 | 127 | 22 |
| 3 | 142 | 163 | 21 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1668 MNLANSLLPSAQGLLPYYMLILSIIPLGNSVQTYATLHFTRRIYNRRFVRNAALPPASASFEPDDAVNKLVPASR DSNTASDQVTPLAGRLFGTWTLISSVVRCYAAYNLHLCPVYDIAIWTYVVAIGHFASELFVFRTMKLGMPQLLPL VLASCALIWMSLVRDHYVESG |
| Coding | >Ophio5|1668 ATGAACTTGGCCAATTCTCTGCTTCCCTCAGCCCAGGGGCTTCTTCCGTACTACATGCTGATTCTCTCCATCATA CCCCTCGGCAACTCAGTTCAAACTTATGCAACGCTACACTTCACGCGGCGCATCTACAACAGGCGCTTCGTGCGA AATGCCGCGCTGCCGCCCGCATCGGCCAGCTTCGAACCAGACGACGCCGTAAACAAGCTCGTGCCCGCATCAAGA GACTCGAATACGGCGTCGGATCAGGTCACGCCCCTCGCCGGCCGCCTGTTCGGCACCTGGACGCTCATCAGCAGT GTCGTCCGCTGCTATGCCGCCTACAACCTACATCTCTGCCCCGTCTATGACATCGCCATCTGGACATACGTCGTC GCCATCGGTCACTTCGCCAGTGAGCTTTTTGTGTTTCGCACCATGAAACTGGGCATGCCGCAGCTCTTGCCCTTG GTACTGGCAAGCTGCGCCTTGATCTGGATGTCCCTGGTGCGGGACCACTATGTCGAGAGCGGC |
| Transcript | >Ophio5|1668 ATGAACTTGGCCAATTCTCTGCTTCCCTCAGCCCAGGGGCTTCTTCCGTACTACATGCTGATTCTCTCCATCATA CCCCTCGGCAACTCAGTTCAAACTTATGCAACGCTACACTTCACGCGGCGCATCTACAACAGGCGCTTCGTGCGA AATGCCGCGCTGCCGCCCGCATCGGCCAGCTTCGAACCAGACGACGCCGTAAACAAGCTCGTGCCCGCATCAAGA GACTCGAATACGGCGTCGGATCAGGTCACGCCCCTCGCCGGCCGCCTGTTCGGCACCTGGACGCTCATCAGCAGT GTCGTCCGCTGCTATGCCGCCTACAACCTACATCTCTGCCCCGTCTATGACATCGCCATCTGGACATACGTCGTC GCCATCGGTCACTTCGCCAGTGAGCTTTTTGTGTTTCGCACCATGAAACTGGGCATGCCGCAGCTCTTGCCCTTG GTACTGGCAAGCTGCGCCTTGATCTGGATGTCCCTGGTGCGGGACCACTATGTCGAGAGCGGCTAG |
| Gene | >Ophio5|1668 ATGAACTTGGCCAATTCTCTGCTTCCCTCAGCCCAGGGGCTTCTTCCGTACTACATGCTGATTGTTCGCATCCCG CCTCAGCTCTATCTCTACTGATCCTCGAGATCCAGACTGACTCTGCCCTCGCCTCAGCTCTCCATCATACCCCTC GGCAACTCAGTTCAAACTTATGCAACGCTACACTTCACGCGGCGCATCTACAACAGGCGCTTCGTGCGAAATGCC GCGCTGCCGCCCGCATCGGCCAGCTTCGAACCAGACGACGCCGTAAACAAGCTCGTGCCCGCATCAAGAGACTCG AATACGGCGTCGGATCAGGTCACGCCCCTCGCCGGCCGCCTGTTCGGCACCTGGACGCTCATCAGCAGTGTCGTC CGCTGCTATGCCGCCTACAACCTACATCTCTGCCCCGTCTATGACATCGCCATCTGGACATACGTCGTCGCCATC GGTCACTTCGCCAGTGAGCTTTTTGTGTTTCGCACCATGAAACTGGGCATGCCGCAGCTCTTGCCCTTGGTACTG GCAAGCTGCGCCTTGATCTGGATGTCCCTGGTGCGGGACCACTATGTCGAGAGCGGCTAG |