Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1651
Gene name
Locationscaffold_160:3069..3751
Strand+
Gene length (bp)682
Transcript length (bp)414
Coding sequence length (bp)411
Protein length (aa) 137

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 61 0.45

Transmembrane Domains

Domain # Start End Length
1 65 87 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 41.36 14.56 68.16
CcL In ants, during behavior modification 196.22 97.02 295.41
CcD In ants, recently dead 115.33 52.16 178.50

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.000286 yes
SC16a CcD 0.000535 yes
CcL CcD 0.046887 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1651
MSRSGCRGVERFMQRMVADKEIKSGRRSAPASVRHSWAAAYQAPSWALVHTPSSSDLVRAISISCFFLGTLVILP
FFFLLACDLLLWGWRHLLGRFAPVQHGEASQTSSTTGDPSRATSAYTTAEDAARGQKPGRRR
Coding >Ophio5|1651
ATGTCCCGATCGGGTTGCAGGGGCGTCGAGAGATTTATGCAACGAATGGTAGCAGATAAGGAAATCAAATCAGGC
AGGCGCTCCGCGCCAGCCTCCGTCCGTCATTCTTGGGCTGCTGCCTACCAGGCCCCGTCCTGGGCCCTTGTCCAT
ACTCCGTCATCGTCGGACCTTGTCCGAGCCATCTCCATCAGCTGCTTCTTCCTAGGAACGCTCGTCATCCTGCCC
TTCTTCTTCCTTCTGGCCTGCGATCTGTTGCTATGGGGCTGGAGACATTTGCTCGGCCGCTTCGCGCCCGTTCAA
CATGGTGAAGCGTCGCAGACCTCATCTACCACGGGCGACCCCTCACGCGCCACCTCGGCTTACACGACAGCCGAG
GACGCGGCACGGGGGCAAAAACCAGGCAGACGACGA
Transcript >Ophio5|1651
ATGTCCCGATCGGGTTGCAGGGGCGTCGAGAGATTTATGCAACGAATGGTAGCAGATAAGGAAATCAAATCAGGC
AGGCGCTCCGCGCCAGCCTCCGTCCGTCATTCTTGGGCTGCTGCCTACCAGGCCCCGTCCTGGGCCCTTGTCCAT
ACTCCGTCATCGTCGGACCTTGTCCGAGCCATCTCCATCAGCTGCTTCTTCCTAGGAACGCTCGTCATCCTGCCC
TTCTTCTTCCTTCTGGCCTGCGATCTGTTGCTATGGGGCTGGAGACATTTGCTCGGCCGCTTCGCGCCCGTTCAA
CATGGTGAAGCGTCGCAGACCTCATCTACCACGGGCGACCCCTCACGCGCCACCTCGGCTTACACGACAGCCGAG
GACGCGGCACGGGGGCAAAAACCAGGCAGACGACGATAA
Gene >Ophio5|1651
ATGTCCCGATCGGGTTGCAGGGGCGTCGAGGTCTGATGGAAGCAATTGCCGAGGTTCACGTCGCGCAGATGCTAA
TGCTAGCCTGCTCAGAGATTTATGCAACGAATGGTAGCAGATAAGGAAATCAAATCAGGCAGGCGGTGAGCACCA
GCCTCGGCTCCCCGCCGCGTTGCGCGTATCAGAGCAGAGACGATAAAAGCTCCGCGCCAGCCTCCGTCCGTCATT
CTTGGGCTGCTGCCTACCAGGTACAATATCTCTGTCAGAAACACCTCTTATGTGGCCGTCTCTCTTTCCATTGCC
AAGTCCATCATGGCTAAGCCCCTGATCGCCGACTTCATTCAGGCCCCGTCCTGGGCCCTTGTCCATACTCCGTCA
TCGTCGGACCTTGTCCGAGCCATCTCCATCAGCTGCGTGAGCGGTCCGTCGCTCCCTCTGTGGAAGCCTCGGTTG
ACACTGTATCCAGTTCTTCCTAGGAACGCTCGTCATCCTGCCCTTCTTCTTCCTTCTGGCCTGCGATCTGTTGCT
ATGGGGCTGGAGACATTTGCTCGGCCGCTTCGCGCCCGTTCAACATGGTGAAGCGTCGCAGACCTCATCTACCAC
GGGCGACCCCTCACGCGCCACCTCGGCTTACACGACAGCCGAGGACGCGGCACGGGGGCAAAAACCAGGCAGACG
ACGATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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