© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|1651 |
| Gene name | |
| Location | scaffold_160:3069..3751 |
| Strand | + |
| Gene length (bp) | 682 |
| Transcript length (bp) | 414 |
| Coding sequence length (bp) | 411 |
| Protein length (aa) | 137 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | 0.33 | 0.2736 | 0.2153 | 0.1626 | 0.4723 | 0.0468 | 0.6791 | 0.3033 | 0.4301 | 0.136 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 65 | 87 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 41.36 | 14.56 | 68.16 |
| CcL | In ants, during behavior modification | 196.22 | 97.02 | 295.41 |
| CcD | In ants, recently dead | 115.33 | 52.16 | 178.50 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 0.000535 | yes |
| CcL | CcD | 0.046887 | yes |
| Orthofinder run ID | 4 |
| Orthogroup | 5642 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1651 MSRSGCRGVERFMQRMVADKEIKSGRRSAPASVRHSWAAAYQAPSWALVHTPSSSDLVRAISISCFFLGTLVILP FFFLLACDLLLWGWRHLLGRFAPVQHGEASQTSSTTGDPSRATSAYTTAEDAARGQKPGRRR |
| Coding | >Ophio5|1651 ATGTCCCGATCGGGTTGCAGGGGCGTCGAGAGATTTATGCAACGAATGGTAGCAGATAAGGAAATCAAATCAGGC AGGCGCTCCGCGCCAGCCTCCGTCCGTCATTCTTGGGCTGCTGCCTACCAGGCCCCGTCCTGGGCCCTTGTCCAT ACTCCGTCATCGTCGGACCTTGTCCGAGCCATCTCCATCAGCTGCTTCTTCCTAGGAACGCTCGTCATCCTGCCC TTCTTCTTCCTTCTGGCCTGCGATCTGTTGCTATGGGGCTGGAGACATTTGCTCGGCCGCTTCGCGCCCGTTCAA CATGGTGAAGCGTCGCAGACCTCATCTACCACGGGCGACCCCTCACGCGCCACCTCGGCTTACACGACAGCCGAG GACGCGGCACGGGGGCAAAAACCAGGCAGACGACGA |
| Transcript | >Ophio5|1651 ATGTCCCGATCGGGTTGCAGGGGCGTCGAGAGATTTATGCAACGAATGGTAGCAGATAAGGAAATCAAATCAGGC AGGCGCTCCGCGCCAGCCTCCGTCCGTCATTCTTGGGCTGCTGCCTACCAGGCCCCGTCCTGGGCCCTTGTCCAT ACTCCGTCATCGTCGGACCTTGTCCGAGCCATCTCCATCAGCTGCTTCTTCCTAGGAACGCTCGTCATCCTGCCC TTCTTCTTCCTTCTGGCCTGCGATCTGTTGCTATGGGGCTGGAGACATTTGCTCGGCCGCTTCGCGCCCGTTCAA CATGGTGAAGCGTCGCAGACCTCATCTACCACGGGCGACCCCTCACGCGCCACCTCGGCTTACACGACAGCCGAG GACGCGGCACGGGGGCAAAAACCAGGCAGACGACGATAA |
| Gene | >Ophio5|1651 ATGTCCCGATCGGGTTGCAGGGGCGTCGAGGTCTGATGGAAGCAATTGCCGAGGTTCACGTCGCGCAGATGCTAA TGCTAGCCTGCTCAGAGATTTATGCAACGAATGGTAGCAGATAAGGAAATCAAATCAGGCAGGCGGTGAGCACCA GCCTCGGCTCCCCGCCGCGTTGCGCGTATCAGAGCAGAGACGATAAAAGCTCCGCGCCAGCCTCCGTCCGTCATT CTTGGGCTGCTGCCTACCAGGTACAATATCTCTGTCAGAAACACCTCTTATGTGGCCGTCTCTCTTTCCATTGCC AAGTCCATCATGGCTAAGCCCCTGATCGCCGACTTCATTCAGGCCCCGTCCTGGGCCCTTGTCCATACTCCGTCA TCGTCGGACCTTGTCCGAGCCATCTCCATCAGCTGCGTGAGCGGTCCGTCGCTCCCTCTGTGGAAGCCTCGGTTG ACACTGTATCCAGTTCTTCCTAGGAACGCTCGTCATCCTGCCCTTCTTCTTCCTTCTGGCCTGCGATCTGTTGCT ATGGGGCTGGAGACATTTGCTCGGCCGCTTCGCGCCCGTTCAACATGGTGAAGCGTCGCAGACCTCATCTACCAC GGGCGACCCCTCACGCGCCACCTCGGCTTACACGACAGCCGAGGACGCGGCACGGGGGCAAAAACCAGGCAGACG ACGATAA |