Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1648
Gene name
Locationscaffold_16:81388..81819
Strand-
Gene length (bp)431
Transcript length (bp)324
Coding sequence length (bp)321
Protein length (aa) 107

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 19 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 0.19 0.0 1.26
CcL In ants, during behavior modification 0.67 0.0 1.72
CcD In ants, recently dead 0.75 0.0 2.22

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 1.0 no
SC16a CcD 1.0 no
CcL CcD 1.0 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1648
MQLTKLYFISLLTSVVSASRVCDGYAWVDWNVDRIDDGGYKVKWRISGGKDATKLSPNTMAWAFSECANARYTCT
ADTGYQMWCVKGTQEVEWGIIAYFSGKVFNPA
Coding >Ophio5|1648
ATGCAACTCACCAAGCTCTACTTCATCTCCCTACTTACCAGCGTCGTCTCTGCCAGCCGCGTCTGCGACGGATAC
GCCTGGGTTGATTGGAACGTAGATAGAATCGACGACGGCGGGTACAAGGTCAAGTGGCGAATCTCCGGCGGCAAG
GACGCCACAAAACTCTCCCCTAACACGATGGCATGGGCATTCTCCGAATGTGCCAACGCGAGATACACATGCACG
GCCGACACGGGCTACCAGATGTGGTGTGTCAAGGGAACCCAAGAGGTGGAATGGGGAATTATTGCTTATTTCAGC
GGCAAGGTCTTCAACCCGGCC
Transcript >Ophio5|1648
ATGCAACTCACCAAGCTCTACTTCATCTCCCTACTTACCAGCGTCGTCTCTGCCAGCCGCGTCTGCGACGGATAC
GCCTGGGTTGATTGGAACGTAGATAGAATCGACGACGGCGGGTACAAGGTCAAGTGGCGAATCTCCGGCGGCAAG
GACGCCACAAAACTCTCCCCTAACACGATGGCATGGGCATTCTCCGAATGTGCCAACGCGAGATACACATGCACG
GCCGACACGGGCTACCAGATGTGGTGTGTCAAGGGAACCCAAGAGGTGGAATGGGGAATTATTGCTTATTTCAGC
GGCAAGGTCTTCAACCCGGCCTGA
Gene >Ophio5|1648
ATGCAACTCACCAAGCTCTACTTCATCTCCCTACTTACCAGCGTCGTCTCTGCCAGCCGCGTCTGCGACGGATAC
GCCTGGGTTGATTGGAACGTAGATAGAATCGACGACGGCGGGTACAAGGTCAAGTGGCGAATCTCCGGCGGCAAG
GACGCCACAAAACTCTCCCCTAACACGATGGCATGGGCATTCTCCGAATGTGCCAACGCGAGATACACATGCACG
GCCGACACGGGCTACCAGATGTGGTGTGTCAAGGGAACCCAAGAGGTGGAATGGGGAATGTACGGCTCGGGCTAC
ATCGGCTTTAAATGCCAGGATTTCCCTTATACCTGTAGCAGCTTCGCGTGGAGAGGAAGACTGTCCAGTTGAATC
AACGAACTGAATTTAGTATTGCTTATTTCAGCGGCAAGGTCTTCAACCCGGCCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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