© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophio5|1637 |
| Gene name | |
| Location | scaffold_16:53394..54015 |
| Strand | - |
| Gene length (bp) | 621 |
| Transcript length (bp) | 348 |
| Coding sequence length (bp) | 345 |
| Protein length (aa) | 115 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05347 | Complex1_LYR | Complex 1 protein (LYR family) | 8.9E-24 | 15 | 72 |
| PF13233 | Complex1_LYR_2 | Complex1_LYR-like | 1.7E-06 | 17 | 78 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9HD34|LYRM4_HUMAN | LYR motif-containing protein 4 OS=Homo sapiens GN=LYRM4 PE=1 SV=1 | 3 | 93 | 4.0E-24 |
| sp|Q8K215|LYRM4_MOUSE | LYR motif-containing protein 4 OS=Mus musculus GN=Lyrm4 PE=1 SV=1 | 3 | 93 | 5.0E-24 |
| sp|Q0VCG0|LYRM4_BOVIN | LYR motif-containing protein 4 OS=Bos taurus GN=LYRM4 PE=3 SV=1 | 3 | 93 | 1.0E-22 |
| sp|B5XD90|LYM4B_SALSA | LYR motif-containing protein 4B OS=Salmo salar GN=lyrm4b PE=3 SV=1 | 16 | 93 | 3.0E-20 |
| sp|B5FZA8|LYRM4_TAEGU | LYR motif-containing protein 4 OS=Taeniopygia guttata GN=LYRM4 PE=3 SV=1 | 3 | 92 | 1.0E-19 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9HD34|LYRM4_HUMAN | LYR motif-containing protein 4 OS=Homo sapiens GN=LYRM4 PE=1 SV=1 | 3 | 93 | 4.0E-24 |
| sp|Q8K215|LYRM4_MOUSE | LYR motif-containing protein 4 OS=Mus musculus GN=Lyrm4 PE=1 SV=1 | 3 | 93 | 5.0E-24 |
| sp|Q0VCG0|LYRM4_BOVIN | LYR motif-containing protein 4 OS=Bos taurus GN=LYRM4 PE=3 SV=1 | 3 | 93 | 1.0E-22 |
| sp|B5XD90|LYM4B_SALSA | LYR motif-containing protein 4B OS=Salmo salar GN=lyrm4b PE=3 SV=1 | 16 | 93 | 3.0E-20 |
| sp|B5FZA8|LYRM4_TAEGU | LYR motif-containing protein 4 OS=Taeniopygia guttata GN=LYRM4 PE=3 SV=1 | 3 | 92 | 1.0E-19 |
| sp|Q6Q560|ISD11_YEAST | Protein ISD11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ISD11 PE=1 SV=1 | 16 | 92 | 2.0E-19 |
| sp|Q6DCS1|LYRM4_XENLA | LYR motif-containing protein 4 OS=Xenopus laevis GN=lyrm4 PE=3 SV=1 | 3 | 94 | 7.0E-19 |
| sp|Q54FN9|LYRM4_DICDI | LYR motif-containing protein 4 OS=Dictyostelium discoideum GN=lyrm4 PE=3 SV=1 | 17 | 92 | 6.0E-18 |
| sp|B8JLQ0|LYRM4_DANRE | LYR motif-containing protein 4 OS=Danio rerio GN=lyrm4 PE=3 SV=1 | 16 | 92 | 4.0E-17 |
| sp|B5X5U9|LYM4A_SALSA | LYR motif-containing protein 4A OS=Salmo salar GN=lyrm4a PE=3 SV=1 | 16 | 99 | 1.0E-16 |
| sp|P82116|BCN92_DROSU | Protein bcn92 OS=Drosophila subobscura GN=bcn92 PE=3 SV=1 | 15 | 100 | 2.0E-16 |
| sp|O46098|BCN92_DROME | Protein bcn92 OS=Drosophila melanogaster GN=bcn92 PE=3 SV=1 | 15 | 93 | 6.0E-15 |
| sp|O60068|ISD11_SCHPO | Protein isd11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=isd11 PE=3 SV=1 | 15 | 106 | 8.0E-12 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 222.40 | 112.19 | 332.60 |
| CcL | In ants, during behavior modification | 182.27 | 88.48 | 276.07 |
| CcD | In ants, recently dead | 260.52 | 135.85 | 385.18 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.456414 | no |
| SC16a | CcD | 0.549880 | no |
| CcL | CcD | 0.142227 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1637 MKMSASSSLKGEMPQQVLSLYRQLLRQGGQFSAYNFREYAKRRTRDAFRENRGVHDPRAIQELVQKGLRELQIMK RQTVISQFYQLNRLVVEGGISGRDDGERGAVVRQKDQGWD |
| Coding | >Ophio5|1637 ATGAAAATGTCTGCCTCGAGCTCGTTGAAAGGCGAGATGCCGCAACAGGTGCTATCTCTGTACCGTCAATTACTG CGGCAAGGAGGACAATTCTCCGCCTACAACTTCCGCGAGTACGCCAAACGACGGACAAGAGATGCCTTCCGCGAG AACAGAGGCGTGCATGACCCGCGGGCGATACAGGAGCTCGTGCAAAAGGGCCTGCGCGAGCTACAGATCATGAAG CGGCAAACGGTCATCAGTCAGTTTTACCAGCTGAATCGGCTGGTTGTTGAGGGCGGGATATCGGGCAGGGACGAC GGCGAACGAGGGGCTGTGGTCAGACAAAAGGATCAAGGATGGGAC |
| Transcript | >Ophio5|1637 ATGAAAATGTCTGCCTCGAGCTCGTTGAAAGGCGAGATGCCGCAACAGGTGCTATCTCTGTACCGTCAATTACTG CGGCAAGGAGGACAATTCTCCGCCTACAACTTCCGCGAGTACGCCAAACGACGGACAAGAGATGCCTTCCGCGAG AACAGAGGCGTGCATGACCCGCGGGCGATACAGGAGCTCGTGCAAAAGGGCCTGCGCGAGCTACAGATCATGAAG CGGCAAACGGTCATCAGTCAGTTTTACCAGCTGAATCGGCTGGTTGTTGAGGGCGGGATATCGGGCAGGGACGAC GGCGAACGAGGGGCTGTGGTCAGACAAAAGGATCAAGGATGGGACTGA |
| Gene | >Ophio5|1637 ATGAAAATGTCTGCCTCGAGCTCGTTGAAAGGCGAGATGCCGCAACAGGTGCTATCTCTGGTAAGAGATTCCTGA ACGCGCCGTTTACCTCGCTCTATCCCATCGGCCTCTACTTCGCTGGGAGAGGCAGCGTTTCGTTACGTCACCGTT CTGACCAGACTCTCGGGCGACAGTACCGTCAATTACTGCGGCAAGGAGGACAATTCTCCGCCTACAACTTCCGCG AGTACGCCAAACGACGGACAAGAGATGCCTTCCGCGAGAACAGAGGCGTGCATGACCCGCGGGCGATACAGGAGC TCGTGCAAAAGGGCCTGCGCGAGCTACAGATCATGAAGGTACGGCGGTCGGCTCCTCCGGACGACGACGGCACGC GCTGATACTCGAGTCAACAGCGGCAAACGGTCATCAGTCAGTTTTACCAGCTGAATCGGCTGGTTGTTGAGGGCG GGATATCGGTATGTCTTGACTGAAGCTTGGTTGGCTCGTAGACGGCTGACGGGACGCAGGGCAGGGACGACGGCG AACGAGGGGCTGTGGTCAGACAAAAGGATCAAGGGTGAGTTTCCCCGTCTGGGATGAAGAGCTTACTTCTGACTG TCTGTCAATAGATGGGACTGA |