Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1637
Gene name
Locationscaffold_16:53394..54015
Strand-
Gene length (bp)621
Transcript length (bp)348
Coding sequence length (bp)345
Protein length (aa) 115

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05347 Complex1_LYR Complex 1 protein (LYR family) 8.9E-24 15 72
PF13233 Complex1_LYR_2 Complex1_LYR-like 1.7E-06 17 78

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q9HD34|LYRM4_HUMAN LYR motif-containing protein 4 OS=Homo sapiens GN=LYRM4 PE=1 SV=1 3 93 4.0E-24
sp|Q8K215|LYRM4_MOUSE LYR motif-containing protein 4 OS=Mus musculus GN=Lyrm4 PE=1 SV=1 3 93 5.0E-24
sp|Q0VCG0|LYRM4_BOVIN LYR motif-containing protein 4 OS=Bos taurus GN=LYRM4 PE=3 SV=1 3 93 1.0E-22
sp|B5XD90|LYM4B_SALSA LYR motif-containing protein 4B OS=Salmo salar GN=lyrm4b PE=3 SV=1 16 93 3.0E-20
sp|B5FZA8|LYRM4_TAEGU LYR motif-containing protein 4 OS=Taeniopygia guttata GN=LYRM4 PE=3 SV=1 3 92 1.0E-19
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Swissprot ID Swissprot Description Start End E-value
sp|Q9HD34|LYRM4_HUMAN LYR motif-containing protein 4 OS=Homo sapiens GN=LYRM4 PE=1 SV=1 3 93 4.0E-24
sp|Q8K215|LYRM4_MOUSE LYR motif-containing protein 4 OS=Mus musculus GN=Lyrm4 PE=1 SV=1 3 93 5.0E-24
sp|Q0VCG0|LYRM4_BOVIN LYR motif-containing protein 4 OS=Bos taurus GN=LYRM4 PE=3 SV=1 3 93 1.0E-22
sp|B5XD90|LYM4B_SALSA LYR motif-containing protein 4B OS=Salmo salar GN=lyrm4b PE=3 SV=1 16 93 3.0E-20
sp|B5FZA8|LYRM4_TAEGU LYR motif-containing protein 4 OS=Taeniopygia guttata GN=LYRM4 PE=3 SV=1 3 92 1.0E-19
sp|Q6Q560|ISD11_YEAST Protein ISD11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ISD11 PE=1 SV=1 16 92 2.0E-19
sp|Q6DCS1|LYRM4_XENLA LYR motif-containing protein 4 OS=Xenopus laevis GN=lyrm4 PE=3 SV=1 3 94 7.0E-19
sp|Q54FN9|LYRM4_DICDI LYR motif-containing protein 4 OS=Dictyostelium discoideum GN=lyrm4 PE=3 SV=1 17 92 6.0E-18
sp|B8JLQ0|LYRM4_DANRE LYR motif-containing protein 4 OS=Danio rerio GN=lyrm4 PE=3 SV=1 16 92 4.0E-17
sp|B5X5U9|LYM4A_SALSA LYR motif-containing protein 4A OS=Salmo salar GN=lyrm4a PE=3 SV=1 16 99 1.0E-16
sp|P82116|BCN92_DROSU Protein bcn92 OS=Drosophila subobscura GN=bcn92 PE=3 SV=1 15 100 2.0E-16
sp|O46098|BCN92_DROME Protein bcn92 OS=Drosophila melanogaster GN=bcn92 PE=3 SV=1 15 93 6.0E-15
sp|O60068|ISD11_SCHPO Protein isd11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=isd11 PE=3 SV=1 15 106 8.0E-12
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GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Mitochondrion Mitochondrial transit peptide 0.3421 0.2481 0.0218 0.0488 0.9688 0.0579 0.0468 0.0566 0.1045 0.0257

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 222.40 112.19 332.60
CcL In ants, during behavior modification 182.27 88.48 276.07
CcD In ants, recently dead 260.52 135.85 385.18

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.456414 no
SC16a CcD 0.549880 no
CcL CcD 0.142227 no

Orthologs

Orthofinder run ID4
Orthogroup6321
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|7847
Ophiocordyceps australis map64 (Brazil) OphauB2|6461
Ophiocordyceps camponoti-floridani Ophcf2|03871
Ophiocordyceps kimflemingae Ophio5|1637 (this protein)
Ophiocordyceps subramaniannii Hirsu2|9769

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1637
MKMSASSSLKGEMPQQVLSLYRQLLRQGGQFSAYNFREYAKRRTRDAFRENRGVHDPRAIQELVQKGLRELQIMK
RQTVISQFYQLNRLVVEGGISGRDDGERGAVVRQKDQGWD
Coding >Ophio5|1637
ATGAAAATGTCTGCCTCGAGCTCGTTGAAAGGCGAGATGCCGCAACAGGTGCTATCTCTGTACCGTCAATTACTG
CGGCAAGGAGGACAATTCTCCGCCTACAACTTCCGCGAGTACGCCAAACGACGGACAAGAGATGCCTTCCGCGAG
AACAGAGGCGTGCATGACCCGCGGGCGATACAGGAGCTCGTGCAAAAGGGCCTGCGCGAGCTACAGATCATGAAG
CGGCAAACGGTCATCAGTCAGTTTTACCAGCTGAATCGGCTGGTTGTTGAGGGCGGGATATCGGGCAGGGACGAC
GGCGAACGAGGGGCTGTGGTCAGACAAAAGGATCAAGGATGGGAC
Transcript >Ophio5|1637
ATGAAAATGTCTGCCTCGAGCTCGTTGAAAGGCGAGATGCCGCAACAGGTGCTATCTCTGTACCGTCAATTACTG
CGGCAAGGAGGACAATTCTCCGCCTACAACTTCCGCGAGTACGCCAAACGACGGACAAGAGATGCCTTCCGCGAG
AACAGAGGCGTGCATGACCCGCGGGCGATACAGGAGCTCGTGCAAAAGGGCCTGCGCGAGCTACAGATCATGAAG
CGGCAAACGGTCATCAGTCAGTTTTACCAGCTGAATCGGCTGGTTGTTGAGGGCGGGATATCGGGCAGGGACGAC
GGCGAACGAGGGGCTGTGGTCAGACAAAAGGATCAAGGATGGGACTGA
Gene >Ophio5|1637
ATGAAAATGTCTGCCTCGAGCTCGTTGAAAGGCGAGATGCCGCAACAGGTGCTATCTCTGGTAAGAGATTCCTGA
ACGCGCCGTTTACCTCGCTCTATCCCATCGGCCTCTACTTCGCTGGGAGAGGCAGCGTTTCGTTACGTCACCGTT
CTGACCAGACTCTCGGGCGACAGTACCGTCAATTACTGCGGCAAGGAGGACAATTCTCCGCCTACAACTTCCGCG
AGTACGCCAAACGACGGACAAGAGATGCCTTCCGCGAGAACAGAGGCGTGCATGACCCGCGGGCGATACAGGAGC
TCGTGCAAAAGGGCCTGCGCGAGCTACAGATCATGAAGGTACGGCGGTCGGCTCCTCCGGACGACGACGGCACGC
GCTGATACTCGAGTCAACAGCGGCAAACGGTCATCAGTCAGTTTTACCAGCTGAATCGGCTGGTTGTTGAGGGCG
GGATATCGGTATGTCTTGACTGAAGCTTGGTTGGCTCGTAGACGGCTGACGGGACGCAGGGCAGGGACGACGGCG
AACGAGGGGCTGTGGTCAGACAAAAGGATCAAGGGTGAGTTTCCCCGTCTGGGATGAAGAGCTTACTTCTGACTG
TCTGTCAATAGATGGGACTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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