© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|1619 |
| Gene name | |
| Location | scaffold_16:2116..2615 |
| Strand | + |
| Gene length (bp) | 499 |
| Transcript length (bp) | 402 |
| Coding sequence length (bp) | 399 |
| Protein length (aa) | 133 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P42117|NDUA3_NEUCR | NADH-ubiquinone oxidoreductase 9.5 kDa subunit OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo9.5 PE=1 SV=3 | 42 | 117 | 1.0E-24 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 64 | 83 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 153.28 | 75.14 | 231.42 |
| CcL | In ants, during behavior modification | 101.97 | 44.90 | 159.05 |
| CcD | In ants, recently dead | 283.76 | 154.47 | 413.06 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.125410 | no |
| SC16a | CcD | 0.008585 | yes |
| CcL | CcD | 0.000286 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1619 MGSFIRATTIAPTSLAFGSSPHHHRTHFTERKPEQLKLLAMSSAPYFWSAPIGYCRWALRERPAIFWSIVIGAAG PIAMPIVPPLRRYFGDVDAPQVPVTYPVPPGPRKVLSGFDDEEPVLSVRRPSKPAAEQ |
| Coding | >Ophio5|1619 ATGGGGAGCTTCATACGAGCCACCACCATAGCTCCGACGTCTCTCGCCTTCGGGAGCTCACCGCATCACCACCGC ACTCATTTCACCGAGAGAAAGCCTGAACAGCTAAAACTCCTCGCCATGTCCTCGGCACCCTACTTCTGGTCCGCG CCCATCGGATACTGCCGCTGGGCCTTACGCGAGCGCCCCGCCATCTTCTGGTCCATCGTCATCGGCGCCGCTGGT CCCATTGCCATGCCAATTGTGCCTCCTCTGCGCCGCTACTTTGGCGACGTCGATGCGCCGCAGGTTCCCGTCACC TATCCCGTTCCTCCCGGTCCGCGCAAGGTCCTGTCCGGCTTCGACGATGAAGAGCCGGTCTTGTCTGTCCGTCGC CCGTCAAAACCCGCCGCTGAACAA |
| Transcript | >Ophio5|1619 ATGGGGAGCTTCATACGAGCCACCACCATAGCTCCGACGTCTCTCGCCTTCGGGAGCTCACCGCATCACCACCGC ACTCATTTCACCGAGAGAAAGCCTGAACAGCTAAAACTCCTCGCCATGTCCTCGGCACCCTACTTCTGGTCCGCG CCCATCGGATACTGCCGCTGGGCCTTACGCGAGCGCCCCGCCATCTTCTGGTCCATCGTCATCGGCGCCGCTGGT CCCATTGCCATGCCAATTGTGCCTCCTCTGCGCCGCTACTTTGGCGACGTCGATGCGCCGCAGGTTCCCGTCACC TATCCCGTTCCTCCCGGTCCGCGCAAGGTCCTGTCCGGCTTCGACGATGAAGAGCCGGTCTTGTCTGTCCGTCGC CCGTCAAAACCCGCCGCTGAACAATGA |
| Gene | >Ophio5|1619 ATGGGGAGCTTCATACGAGCCACCACCATAGCTCCGACGTCTCTCGCCTTCGGGAGCTCACCGCATCACCACCGC ACTCATTTCACCGAGAGAAAGCCTGAACAGCTAAAACTCCTCGCCATGTCCTCGGCACCCTACTTCTGGTCCGCG CCCATCGGATACTGCCGCTGGGCCTTACGCGAGCGCCCCGCCATCTTCTGGTCCATCGTCATCGGCGCCGCTGGT CCCATTGCCATGCCAATTGTGCCTCCTCTGCGCCGCTACTTTGGCGACGTCGATGCGCCGCAGGTTCCCGTCACC TATCCCGGTAATGCCCAGGCTTCCTCTGGCCTTTTCCCGTCTTTGACATCGTCGCTTGACCACTGCTTCCCTCGT CCCGTCCTGCTGATGCCACTTTTCTCCAGTTCCTCCCGGTCCGCGCAAGGTCCTGTCCGGCTTCGACGATGAAGA GCCGGTCTTGTCTGTCCGTCGCCCGTCAAAACCCGCCGCTGAACAATGA |