Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1619
Gene name
Locationscaffold_16:2116..2615
Strand+
Gene length (bp)499
Transcript length (bp)402
Coding sequence length (bp)399
Protein length (aa) 133

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PFAM Domains

(None)

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P42117|NDUA3_NEUCR NADH-ubiquinone oxidoreductase 9.5 kDa subunit OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo9.5 PE=1 SV=3 42 117 1.0E-24

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 19 0.45

Transmembrane Domains

Domain # Start End Length
1 64 83 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1619
MGSFIRATTIAPTSLAFGSSPHHHRTHFTERKPEQLKLLAMSSAPYFWSAPIGYCRWALRERPAIFWSIVIGAAG
PIAMPIVPPLRRYFGDVDAPQVPVTYPVPPGPRKVLSGFDDEEPVLSVRRPSKPAAEQ
Coding >Ophio5|1619
ATGGGGAGCTTCATACGAGCCACCACCATAGCTCCGACGTCTCTCGCCTTCGGGAGCTCACCGCATCACCACCGC
ACTCATTTCACCGAGAGAAAGCCTGAACAGCTAAAACTCCTCGCCATGTCCTCGGCACCCTACTTCTGGTCCGCG
CCCATCGGATACTGCCGCTGGGCCTTACGCGAGCGCCCCGCCATCTTCTGGTCCATCGTCATCGGCGCCGCTGGT
CCCATTGCCATGCCAATTGTGCCTCCTCTGCGCCGCTACTTTGGCGACGTCGATGCGCCGCAGGTTCCCGTCACC
TATCCCGTTCCTCCCGGTCCGCGCAAGGTCCTGTCCGGCTTCGACGATGAAGAGCCGGTCTTGTCTGTCCGTCGC
CCGTCAAAACCCGCCGCTGAACAA
Transcript >Ophio5|1619
ATGGGGAGCTTCATACGAGCCACCACCATAGCTCCGACGTCTCTCGCCTTCGGGAGCTCACCGCATCACCACCGC
ACTCATTTCACCGAGAGAAAGCCTGAACAGCTAAAACTCCTCGCCATGTCCTCGGCACCCTACTTCTGGTCCGCG
CCCATCGGATACTGCCGCTGGGCCTTACGCGAGCGCCCCGCCATCTTCTGGTCCATCGTCATCGGCGCCGCTGGT
CCCATTGCCATGCCAATTGTGCCTCCTCTGCGCCGCTACTTTGGCGACGTCGATGCGCCGCAGGTTCCCGTCACC
TATCCCGTTCCTCCCGGTCCGCGCAAGGTCCTGTCCGGCTTCGACGATGAAGAGCCGGTCTTGTCTGTCCGTCGC
CCGTCAAAACCCGCCGCTGAACAATGA
Gene >Ophio5|1619
ATGGGGAGCTTCATACGAGCCACCACCATAGCTCCGACGTCTCTCGCCTTCGGGAGCTCACCGCATCACCACCGC
ACTCATTTCACCGAGAGAAAGCCTGAACAGCTAAAACTCCTCGCCATGTCCTCGGCACCCTACTTCTGGTCCGCG
CCCATCGGATACTGCCGCTGGGCCTTACGCGAGCGCCCCGCCATCTTCTGGTCCATCGTCATCGGCGCCGCTGGT
CCCATTGCCATGCCAATTGTGCCTCCTCTGCGCCGCTACTTTGGCGACGTCGATGCGCCGCAGGTTCCCGTCACC
TATCCCGGTAATGCCCAGGCTTCCTCTGGCCTTTTCCCGTCTTTGACATCGTCGCTTGACCACTGCTTCCCTCGT
CCCGTCCTGCTGATGCCACTTTTCTCCAGTTCCTCCCGGTCCGCGCAAGGTCCTGTCCGGCTTCGACGATGAAGA
GCCGGTCTTGTCTGTCCGTCGCCCGTCAAAACCCGCCGCTGAACAATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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