Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|1613
Gene name
Location	scaffold_159:29261..30110
Strand	+
Gene length (bp)	849
Transcript length (bp)	723
Coding sequence length (bp)	720
Protein length (aa)	240

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF01627	Hpt	Hpt domain	3.0E-11	134	203

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O94321\|MPR1_SCHPO	Multistep phosphorelay regulator 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mpr1 PE=1 SV=1	93	231	2.0E-30
sp\|Q59WC6\|YPD1_CANAL	Phosphorelay intermediate protein YPD1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=YPD1 PE=3 SV=1	108	209	5.0E-20
sp\|Q07688\|YPD1_YEAST	Phosphorelay intermediate protein YPD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPD1 PE=1 SV=1	131	189	1.0E-09

GO

GO Term	Description	Terminal node
GO:0000160	phosphorelay signal transduction system	Yes
GO:0007165	signal transduction	No
GO:0009987	cellular process	No
GO:0050789	regulation of biological process	No
GO:0065007	biological regulation	No
GO:0050794	regulation of cellular process	No
GO:0035556	intracellular signal transduction	No
GO:0008150	biological_process	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 20	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	112.76	60.62	164.91
CcL	In ants, during behavior modification	55.64	26.00	85.27
CcD	In ants, recently dead	41.48	18.47	64.50

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.002236	yes
SC16a	CcD	0.000286	yes
CcL	CcD	0.285231	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|1613 MPHYVAGAFSSSLPPSLFCATSQLLPVETPCSSFSHLLCLSRHVTTRELPHTPAAPRRHRATRRRATEGFDELPL PLPRRRHRVAVTMAPVEDKSLEDGLNQMLGNAVDMNTFNQILEMDEPGDREFSSSIVFSFFNQAEETFESMDKAL EKKDLEKLAGLGHFLKGSSATLGLVKVRDGCEKIERYGKNENADGSTEPDSGLCLKHISEALVTVKIDYKDVERI LKRYYEGDKLKSDDA
Coding	>Ophio5\|1613 ATGCCTCATTACGTAGCCGGCGCCTTCTCCAGTTCCCTCCCTCCCTCACTCTTTTGCGCCACGTCTCAACTCCTC CCTGTCGAGACGCCCTGTTCTTCTTTCTCCCATCTTCTCTGCCTCTCACGACACGTCACGACACGTGAACTCCCG CATACGCCAGCTGCTCCTCGCCGTCATCGAGCCACTCGTCGCCGCGCCACCGAGGGCTTTGACGAGTTACCCCTC CCCCTCCCCCGCCGCCGGCATCGTGTAGCCGTCACCATGGCGCCGGTCGAAGACAAGTCACTCGAGGATGGTCTC AACCAAATGTTGGGCAACGCCGTCGACATGAACACCTTTAATCAGATTCTCGAGATGGACGAGCCCGGTGATCGC GAGTTCAGTTCTTCCATCGTCTTTAGCTTCTTCAACCAGGCCGAGGAGACTTTCGAGTCTATGGACAAGGCACTC GAAAAAAAGGATCTAGAAAAGCTGGCCGGACTCGGCCATTTCCTTAAAGGTTCGTCGGCAACCCTCGGCCTCGTC AAAGTCAGGGATGGCTGCGAGAAGATTGAGCGATACGGCAAAAACGAGAATGCGGATGGATCAACCGAGCCCGAC TCCGGCCTATGTCTCAAGCACATCAGCGAGGCCCTTGTGACCGTCAAGATCGACTATAAGGACGTCGAGCGCATT CTCAAGAGGTATTACGAGGGCGATAAGCTGAAAAGCGACGACGCA
Transcript	>Ophio5\|1613 ATGCCTCATTACGTAGCCGGCGCCTTCTCCAGTTCCCTCCCTCCCTCACTCTTTTGCGCCACGTCTCAACTCCTC CCTGTCGAGACGCCCTGTTCTTCTTTCTCCCATCTTCTCTGCCTCTCACGACACGTCACGACACGTGAACTCCCG CATACGCCAGCTGCTCCTCGCCGTCATCGAGCCACTCGTCGCCGCGCCACCGAGGGCTTTGACGAGTTACCCCTC CCCCTCCCCCGCCGCCGGCATCGTGTAGCCGTCACCATGGCGCCGGTCGAAGACAAGTCACTCGAGGATGGTCTC AACCAAATGTTGGGCAACGCCGTCGACATGAACACCTTTAATCAGATTCTCGAGATGGACGAGCCCGGTGATCGC GAGTTCAGTTCTTCCATCGTCTTTAGCTTCTTCAACCAGGCCGAGGAGACTTTCGAGTCTATGGACAAGGCACTC GAAAAAAAGGATCTAGAAAAGCTGGCCGGACTCGGCCATTTCCTTAAAGGTTCGTCGGCAACCCTCGGCCTCGTC AAAGTCAGGGATGGCTGCGAGAAGATTGAGCGATACGGCAAAAACGAGAATGCGGATGGATCAACCGAGCCCGAC TCCGGCCTATGTCTCAAGCACATCAGCGAGGCCCTTGTGACCGTCAAGATCGACTATAAGGACGTCGAGCGCATT CTCAAGAGGTATTACGAGGGCGATAAGCTGAAAAGCGACGACGCATGA
Gene	>Ophio5\|1613 ATGCCTCATTACGTAGCCGGCGCCTTCTCCAGTTCCCTCCCTCCCTCACTCTTTTGCGCCACGTCTCAACTCCTC CCTGTCGAGACGCCCTGTTCTTCTTTCTCCCATCTTCTCTGCCTCTCACGACACGTCACGACACGTGAACTCCCG CATACGCCAGCTGCTCCTCGCCGTCATCGAGCCACTCGTCGCCGCGCCACCGAGGGCTTTGACGAGTTACCCCTC CCCCTCCCCCGCCGCCGGCATCGTGTAGCCGTCACCATGGCGCCGGTCGAAGACAAGGTATGGTTTTTTTTTAAA AAAAATTCTTCTCTGACTGCTCACCTGCAGGCTGACTGGCATTGCGCAGCAGTCACTCGAGGATGGTCTCAACCA AATGTTGGGCAACGCCGTCGACATGAACACCTTTAATCAGATTCTCGAGATGGACGAGCCCGGTGATCGCGAGTT CAGTTCTTCCATCGTCTTTAGCTTCTTCAACCAGGCCGAGGAGACTTTCGAGTCTATGGACAAGGCACTGTGAGT AAATGTCAACAAAGAAGCTCGCCACTCAAATCTCATTTCGCTTGGCGCAGCGAAAAAAAGGATCTAGAAAAGCTG GCCGGACTCGGCCATTTCCTTAAAGGTTCGTCGGCAACCCTCGGCCTCGTCAAAGTCAGGGATGGCTGCGAGAAG ATTGAGCGATACGGCAAAAACGAGAATGCGGATGGATCAACCGAGCCCGACTCCGGCCTATGTCTCAAGCACATC AGCGAGGCCCTTGTGACCGTCAAGATCGACTATAAGGACGTCGAGCGCATTCTCAAGAGGTATTACGAGGGCGAT AAGCTGAAAAGCGACGACGCATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail