© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|1595 |
| Gene name | |
| Location | scaffold_158:18503..19344 |
| Strand | + |
| Gene length (bp) | 841 |
| Transcript length (bp) | 768 |
| Coding sequence length (bp) | 765 |
| Protein length (aa) | 255 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mitochondrion | Mitochondrial transit peptide | 0.094 | 0.1626 | 0.0376 | 0.0645 | 0.9315 | 0.0352 | 0.0453 | 0.0237 | 0.0575 | 0.0057 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 89 | 111 | 22 |
| 2 | 126 | 143 | 17 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 99.80 | 53.83 | 145.78 |
| CcL | In ants, during behavior modification | 37.88 | 16.29 | 59.46 |
| CcD | In ants, recently dead | 48.83 | 23.15 | 74.52 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 0.002627 | yes |
| CcL | CcD | 0.380382 | no |
| Orthofinder run ID | 4 |
| Orthogroup | 4815 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1595 MAGLSRGLAFLCRPSLLRPQSTMLWPRVKGPASASRFSTSPLGRARSTKPVERDVMAQAMQSSSRYAFLTKLAAK PSPTVLYQAPSHFWFYFTCWSTGLTLIGWSAVTAPTVLDQPEGVPKFTKRVYAVTYIILCAMGFWLIAKTPNVIS SIRLLPSTAAPTPGASPIAAVTAKLQLELTVKRMLPLFSPKVIKTGIDKVSLQTRPSRSLRHIPEAKRLQMERYE AARRAALRKFDMDHLMTMPFRRIGRGFVSL |
| Coding | >Ophio5|1595 ATGGCCGGCCTCTCGCGGGGCCTCGCGTTCCTCTGCCGGCCGAGTCTCCTCCGGCCGCAGTCTACCATGCTCTGG CCCCGCGTAAAGGGTCCCGCGAGCGCAAGCCGATTCTCCACCTCGCCTCTCGGCCGTGCGCGGTCGACTAAGCCA GTCGAGCGCGATGTGATGGCGCAGGCGATGCAGAGCAGTTCGCGATACGCTTTCCTCACCAAGCTGGCCGCCAAG CCGTCACCGACAGTGCTTTACCAGGCGCCGTCGCACTTTTGGTTCTACTTTACCTGCTGGTCCACCGGCCTGACG CTGATCGGTTGGTCAGCTGTTACGGCGCCGACGGTCCTCGACCAGCCCGAGGGCGTGCCCAAGTTTACGAAGCGC GTCTATGCCGTGACGTACATAATCCTCTGCGCCATGGGATTCTGGCTCATCGCCAAGACGCCCAACGTCATCAGC TCGATACGCCTGCTGCCCTCGACTGCAGCGCCCACTCCAGGTGCATCGCCCATTGCGGCGGTGACGGCCAAATTA CAGCTCGAGTTGACGGTCAAGCGCATGCTGCCCCTGTTCTCTCCAAAGGTCATCAAAACGGGCATCGACAAGGTA TCGCTTCAGACGCGCCCCTCGCGGTCGTTGCGGCACATTCCCGAGGCGAAGCGACTACAAATGGAGCGCTATGAG GCGGCGCGGCGTGCTGCGCTGCGCAAGTTTGACATGGACCATCTCATGACAATGCCCTTTCGCCGTATCGGCCGT GGCTTCGTCAGCTTA |
| Transcript | >Ophio5|1595 ATGGCCGGCCTCTCGCGGGGCCTCGCGTTCCTCTGCCGGCCGAGTCTCCTCCGGCCGCAGTCTACCATGCTCTGG CCCCGCGTAAAGGGTCCCGCGAGCGCAAGCCGATTCTCCACCTCGCCTCTCGGCCGTGCGCGGTCGACTAAGCCA GTCGAGCGCGATGTGATGGCGCAGGCGATGCAGAGCAGTTCGCGATACGCTTTCCTCACCAAGCTGGCCGCCAAG CCGTCACCGACAGTGCTTTACCAGGCGCCGTCGCACTTTTGGTTCTACTTTACCTGCTGGTCCACCGGCCTGACG CTGATCGGTTGGTCAGCTGTTACGGCGCCGACGGTCCTCGACCAGCCCGAGGGCGTGCCCAAGTTTACGAAGCGC GTCTATGCCGTGACGTACATAATCCTCTGCGCCATGGGATTCTGGCTCATCGCCAAGACGCCCAACGTCATCAGC TCGATACGCCTGCTGCCCTCGACTGCAGCGCCCACTCCAGGTGCATCGCCCATTGCGGCGGTGACGGCCAAATTA CAGCTCGAGTTGACGGTCAAGCGCATGCTGCCCCTGTTCTCTCCAAAGGTCATCAAAACGGGCATCGACAAGGTA TCGCTTCAGACGCGCCCCTCGCGGTCGTTGCGGCACATTCCCGAGGCGAAGCGACTACAAATGGAGCGCTATGAG GCGGCGCGGCGTGCTGCGCTGCGCAAGTTTGACATGGACCATCTCATGACAATGCCCTTTCGCCGTATCGGCCGT GGCTTCGTCAGCTTATAG |
| Gene | >Ophio5|1595 ATGGCCGGCCTCTCGCGGGGCCTCGCGTTCCTCTGCCGGCCGAGTCTCCTCCGGCCGCAGTCTACCATGCTCTGG CCCCGCGTAAAGGGTCCCGCGAGCGCAAGCCGATTCTCCACCTCGCCTCTCGGCCGTGCGCGGTCGACTAAGCCA GTCGAGCGCGATGTGATGGCGCAGGCGATGCAGAGCAGTTCGCGATACGCTTTCCTCACCAAGCTGGCCGCCAAG CCGTCACCGACAGTGCTTTACCAGGCGCCGTCGCACTTTTGGTTCTACTTTACCTGCTGGTCCACCGGCCTGACG CTGATCGGTTGGTCAGCTGTTACGGCGCCGACGGTCCTCGACCAGCCCGAGGGCGTGCCCAAGTTTACGAAGCGC GTCTATGCCGTGACGTACATAATCCTCTGCGCCATGGGATTCTGGCTCATCGCCAAGACGCCCAACGTCATCAGC TCGATACGCCTGCTGCCCTCGACTGCAGCGCCCACTCCAGGTGCATCGCCCATTGCGGCGGTGACGGCCAAATTA CAGCTCGAGTTGACGGTCAAGCGCATGCTGCCCCTGTTCTCTCCAAAGGTCATCAAAACGGGCATCGACAAGGTA TCGCTTCAGACGCGCCCCTCGCGGTCGTTGCGGCACATTCCCGAGGCGAAGCGACTACAAATGGAGCGCTATGAG GCGGCGCGGCGTGCTGCGCTGCGCAAGTTTGACATGGACCATCTCATGACAATGCCCTTTCGCCGTATCGGCCGT GGCTTCGTCAGCTTGTTTCGGGGCGCCAAGTCGGCGTGGACTGGTGCAGGTTTCGGGACCATTAGGGTCAACGGC AAAAAGCATCAGATAG |