© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|1587 |
| Gene name | |
| Location | scaffold_158:2328..4041 |
| Strand | + |
| Gene length (bp) | 1713 |
| Transcript length (bp) | 1458 |
| Coding sequence length (bp) | 1455 |
| Protein length (aa) | 485 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01699 | Na_Ca_ex | Sodium/calcium exchanger protein | 2.5E-20 | 98 | 264 |
| PF01699 | Na_Ca_ex | Sodium/calcium exchanger protein | 1.5E-22 | 325 | 468 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O59768|VCX1_SCHPO | Vacuolar calcium ion transporter OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vcx1 PE=3 SV=1 | 69 | 471 | 6.0E-108 |
| sp|Q99385|VCX1_YEAST | Vacuolar calcium ion transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VCX1 PE=1 SV=1 | 77 | 473 | 3.0E-106 |
| sp|Q75XW3|CAX_APHHA | Ca(2+)/H(+) antiporter OS=Aphanothece halophytica PE=1 SV=1 | 80 | 471 | 4.0E-89 |
| sp|Q39254|CAX2_ARATH | Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2 | 69 | 469 | 2.0E-79 |
| sp|Q8L783|CAX5_ARATH | Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1 | 69 | 469 | 8.0E-77 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O59768|VCX1_SCHPO | Vacuolar calcium ion transporter OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vcx1 PE=3 SV=1 | 69 | 471 | 6.0E-108 |
| sp|Q99385|VCX1_YEAST | Vacuolar calcium ion transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VCX1 PE=1 SV=1 | 77 | 473 | 3.0E-106 |
| sp|Q75XW3|CAX_APHHA | Ca(2+)/H(+) antiporter OS=Aphanothece halophytica PE=1 SV=1 | 80 | 471 | 4.0E-89 |
| sp|Q39254|CAX2_ARATH | Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2 | 69 | 469 | 2.0E-79 |
| sp|Q8L783|CAX5_ARATH | Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1 | 69 | 469 | 8.0E-77 |
| sp|P74072|CAX_SYNY3 | Ca(2+)/H(+) antiporter OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1336 PE=1 SV=1 | 80 | 472 | 4.0E-75 |
| sp|Q6K1C4|CAX3_ORYSJ | Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica GN=CAX3 PE=2 SV=2 | 69 | 469 | 4.0E-73 |
| sp|Q9LFZ8|CAX6_ARATH | Putative vacuolar cation/proton exchanger 6 OS=Arabidopsis thaliana GN=CAX6 PE=3 SV=3 | 69 | 469 | 4.0E-72 |
| sp|Q5KQN0|CAX2_ORYSJ | Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica GN=CAX2 PE=2 SV=2 | 69 | 469 | 6.0E-72 |
| sp|Q5TKG3|CAX1B_ORYSJ | Vacuolar cation/proton exchanger 1b OS=Oryza sativa subsp. japonica GN=CAX1b PE=2 SV=1 | 83 | 469 | 1.0E-71 |
| sp|Q945S5|CAX4_ARATH | Vacuolar cation/proton exchanger 4 OS=Arabidopsis thaliana GN=CAX4 PE=1 SV=2 | 72 | 475 | 4.0E-71 |
| sp|Q6YXZ1|CAX4_ORYSJ | Putative vacuolar cation/proton exchanger 4 OS=Oryza sativa subsp. japonica GN=Os02g0138900 PE=3 SV=1 | 19 | 469 | 1.0E-68 |
| sp|Q39253|CAX1_ARATH | Vacuolar cation/proton exchanger 1 OS=Arabidopsis thaliana GN=CAX1 PE=1 SV=3 | 72 | 469 | 6.0E-68 |
| sp|Q93Z81|CAX3_ARATH | Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1 | 72 | 473 | 3.0E-67 |
| sp|Q769E5|CAX1A_ORYSJ | Vacuolar cation/proton exchanger 1a OS=Oryza sativa subsp. japonica GN=CAX1a PE=1 SV=1 | 72 | 476 | 3.0E-64 |
| sp|O34840|CHAA_BACSU | Ca(2+)/H(+) antiporter ChaA OS=Bacillus subtilis (strain 168) GN=chaA PE=1 SV=1 | 75 | 469 | 3.0E-55 |
| sp|Q5KTQ9|CAX1C_ORYSJ | Vacuolar cation/proton exchanger 1c OS=Oryza sativa subsp. japonica GN=CAX1c PE=2 SV=1 | 72 | 469 | 5.0E-51 |
| sp|Q9P7B3|YI14_SCHPO | Putative cation exchanger C521.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC521.04c PE=1 SV=1 | 56 | 467 | 2.0E-32 |
| sp|P42839|VNX1_YEAST | Low affinity vacuolar monovalent cation/H(+) antiporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VNX1 PE=1 SV=1 | 99 | 468 | 3.0E-32 |
| sp|P55471|Y4HA_RHISN | Putative ionic transporter y4hA OS=Rhizobium sp. (strain NGR234) GN=NGR_a03490 PE=3 SV=1 | 120 | 462 | 9.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0006810 | transport | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 54 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 72 | 94 | 22 |
| 2 | 98 | 117 | 19 |
| 3 | 129 | 151 | 22 |
| 4 | 162 | 184 | 22 |
| 5 | 205 | 227 | 22 |
| 6 | 240 | 262 | 22 |
| 7 | 323 | 345 | 22 |
| 8 | 360 | 382 | 22 |
| 9 | 389 | 411 | 22 |
| 10 | 421 | 443 | 22 |
| 11 | 450 | 472 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 83.43 | 45.48 | 121.38 |
| CcL | In ants, during behavior modification | 60.46 | 31.12 | 89.81 |
| CcD | In ants, recently dead | 57.22 | 31.44 | 83.00 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.181609 | no |
| SC16a | CcD | 0.095075 | no |
| CcL | CcD | 0.842061 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1587 MSSKSRSGADERTPLLPDQPSSSDAQSPARPCQSSSNAYTFFLNRRITPGTDSDRLAVKSGACLWHVAKVTLLSN YVNFLLVAVPLGIIAGAMAWGPVAVFTLNFLAIIPLAAVLSFATEEIAAKLGEALGGLLSATLGNAVELIVSIIA LKDGQIEVVQSSMLGSILSNLLLVMGTCFLLGGLRHRGSSGDGDQQEFTDAVAQTTCSLMTLSTASLVLPAALYA VMDQNGSHGKSTQHTILILSHGTAVLLFILYVVYLIFQLRTHSNLFDAELQSAERRNAANCNGQDHNGQGQNTTG HHSQDGNTQPEEDEDDGPVIGPISAAIVLIVTTILVAICAQYLVGSIDAVVKKENISKTFIGLILIPIVGNAAEH VTAVVVAMRNKMDLAMGVAIGSSIQIALGLTPFLVIVGWIMGQPMTLHFETFATVAFAISVLVATYVIQDGKSNY LEGAMLIGLYIIIAVAFYVTPSDALHKVPTAVIRG |
| Coding | >Ophio5|1587 ATGAGCTCCAAATCGAGGAGCGGCGCCGACGAGCGCACACCTCTCCTCCCAGACCAGCCATCTTCCTCCGACGCC CAAAGCCCAGCCCGTCCATGCCAATCGTCGTCAAACGCCTACACCTTCTTTCTCAATCGCAGAATCACACCCGGC ACAGATAGCGACAGGTTGGCAGTCAAGAGCGGCGCTTGCCTCTGGCACGTCGCCAAGGTGACGCTTCTCAGCAAC TATGTCAACTTTCTCCTTGTCGCCGTGCCGCTCGGTATTATCGCCGGTGCCATGGCCTGGGGCCCGGTCGCCGTC TTCACCCTCAACTTCTTGGCCATCATCCCGCTTGCGGCCGTCTTGTCCTTTGCCACCGAGGAGATTGCGGCCAAG CTCGGGGAAGCCTTAGGGGGTCTCTTGAGTGCTACCTTGGGCAACGCCGTCGAACTCATCGTAAGCATCATCGCT CTCAAGGATGGCCAGATCGAAGTCGTCCAGTCCTCTATGCTGGGCTCCATTCTATCCAACTTGCTGCTCGTCATG GGCACCTGCTTCCTACTCGGCGGCCTTCGCCATCGTGGCTCGAGTGGCGATGGCGACCAACAAGAGTTCACCGAC GCCGTTGCGCAGACCACGTGTTCCTTGATGACCCTTTCTACTGCTTCCCTCGTCCTCCCTGCCGCTCTATACGCC GTCATGGATCAGAACGGCTCACACGGAAAAAGCACGCAGCACACCATTCTCATCCTGTCTCACGGTACTGCCGTG CTCCTGTTCATACTCTACGTCGTCTACCTTATTTTCCAGCTCCGTACGCATAGCAATCTCTTTGATGCCGAACTC CAGAGCGCCGAGCGGCGGAATGCTGCAAACTGCAACGGCCAAGACCACAATGGCCAAGGTCAGAACACGACGGGC CACCACAGCCAAGACGGCAATACGCAGCCCGAGGAGGACGAAGACGATGGACCGGTCATAGGTCCCATCTCCGCC GCTATCGTTCTCATCGTCACTACCATCCTTGTCGCCATTTGCGCACAGTATCTTGTCGGCAGTATAGACGCCGTT GTGAAGAAGGAAAACATTAGCAAGACATTCATCGGACTGATCCTGATTCCGATTGTGGGCAACGCGGCCGAGCAC GTCACCGCTGTTGTCGTCGCCATGCGCAACAAGATGGATTTGGCCATGGGCGTCGCCATCGGCTCTTCTATCCAG ATTGCACTCGGTCTAACCCCTTTCTTGGTCATAGTCGGTTGGATCATGGGCCAGCCAATGACGCTCCATTTCGAG ACGTTTGCGACAGTGGCATTCGCCATTTCCGTTTTGGTTGCTACCTATGTGATACAGGATGGCAAATCCAACTAC CTCGAAGGGGCTATGCTTATCGGTCTGTACATCATCATCGCCGTCGCTTTCTATGTCACGCCCAGCGATGCATTG CACAAGGTGCCGACGGCCGTCATCAGGGGT |
| Transcript | >Ophio5|1587 ATGAGCTCCAAATCGAGGAGCGGCGCCGACGAGCGCACACCTCTCCTCCCAGACCAGCCATCTTCCTCCGACGCC CAAAGCCCAGCCCGTCCATGCCAATCGTCGTCAAACGCCTACACCTTCTTTCTCAATCGCAGAATCACACCCGGC ACAGATAGCGACAGGTTGGCAGTCAAGAGCGGCGCTTGCCTCTGGCACGTCGCCAAGGTGACGCTTCTCAGCAAC TATGTCAACTTTCTCCTTGTCGCCGTGCCGCTCGGTATTATCGCCGGTGCCATGGCCTGGGGCCCGGTCGCCGTC TTCACCCTCAACTTCTTGGCCATCATCCCGCTTGCGGCCGTCTTGTCCTTTGCCACCGAGGAGATTGCGGCCAAG CTCGGGGAAGCCTTAGGGGGTCTCTTGAGTGCTACCTTGGGCAACGCCGTCGAACTCATCGTAAGCATCATCGCT CTCAAGGATGGCCAGATCGAAGTCGTCCAGTCCTCTATGCTGGGCTCCATTCTATCCAACTTGCTGCTCGTCATG GGCACCTGCTTCCTACTCGGCGGCCTTCGCCATCGTGGCTCGAGTGGCGATGGCGACCAACAAGAGTTCACCGAC GCCGTTGCGCAGACCACGTGTTCCTTGATGACCCTTTCTACTGCTTCCCTCGTCCTCCCTGCCGCTCTATACGCC GTCATGGATCAGAACGGCTCACACGGAAAAAGCACGCAGCACACCATTCTCATCCTGTCTCACGGTACTGCCGTG CTCCTGTTCATACTCTACGTCGTCTACCTTATTTTCCAGCTCCGTACGCATAGCAATCTCTTTGATGCCGAACTC CAGAGCGCCGAGCGGCGGAATGCTGCAAACTGCAACGGCCAAGACCACAATGGCCAAGGTCAGAACACGACGGGC CACCACAGCCAAGACGGCAATACGCAGCCCGAGGAGGACGAAGACGATGGACCGGTCATAGGTCCCATCTCCGCC GCTATCGTTCTCATCGTCACTACCATCCTTGTCGCCATTTGCGCACAGTATCTTGTCGGCAGTATAGACGCCGTT GTGAAGAAGGAAAACATTAGCAAGACATTCATCGGACTGATCCTGATTCCGATTGTGGGCAACGCGGCCGAGCAC GTCACCGCTGTTGTCGTCGCCATGCGCAACAAGATGGATTTGGCCATGGGCGTCGCCATCGGCTCTTCTATCCAG ATTGCACTCGGTCTAACCCCTTTCTTGGTCATAGTCGGTTGGATCATGGGCCAGCCAATGACGCTCCATTTCGAG ACGTTTGCGACAGTGGCATTCGCCATTTCCGTTTTGGTTGCTACCTATGTGATACAGGATGGCAAATCCAACTAC CTCGAAGGGGCTATGCTTATCGGTCTGTACATCATCATCGCCGTCGCTTTCTATGTCACGCCCAGCGATGCATTG CACAAGGTGCCGACGGCCGTCATCAGGGGTTGA |
| Gene | >Ophio5|1587 ATGAGCTCCAAATCGAGGAGCGGCGCCGACGAGCGCACACCTCTCCTCCCAGACCAGCCATCTTCCTCCGACGCC CAAAGCCCAGCCCGTCCATGCCAATCGTCGTCAAACGCCTACACCTTCTTTCTCAATCGCAGAATCACACCCGGC ACAGATAGCGACAGGTTGGCAGTCAAGAGCGGCGCTTGCCTCTGGCACGTCGCCAAGGTGACGCTTCTCAGCAGT CCGTCGCCATGCTACTACTAGCTGCTTTCCTCGGCCCGCCGCTGATGACGCGTTCCCCCCCCCCCTTTCAGACTA TGTCAACTTTCTCCTTGTCGCCGTGCCGCTCGGTATTATCGCCGGTGCCATGGCCTGGGGCCCGGTCGCCGTCTT CACCCTCAACTTCTTGGCCATCATCCCGCTTGCGGCCGTCTTGTCCTTTGCCACCGAGGAGATTGCGGCCAAGCT CGGGGAAGCCTTAGGGGGTCTCTTGAGTGCTACCTTGGGCAACGCCGTCGAACTCATCGTGCGTTGTGTACCTGC CCTCAACTCTGTCTAGAGCCTACCTACCTAACTCGGTCCTAGGTAAGCATCATCGCTCTCAAGGATGGCCAGATC GAAGTCGTCCAGTCCTCTATGCTGGGCTCCATTCTATCCAACTTGCTGCTCGTCATGGGCACCTGCTTCCTACTC GGCGGCCTTCGCCATCGTGGCTCGAGTGGCGATGGCGACCAACAAGAGTTCACCGACGCCGTTGCGCAGACCACG TGTTCCTTGATGACCCTTTCTACTGCTTCCCTCGTCCTCCCTGCCGCTGTAAGGCTGCCCCTTGCCCCCGACCGA ATCATACCTACCTAGGTAGTTGTTCTGACATGATGTAGCTATACGCCGTCATGGATCAGAACGGCTCACACGGAA AAAGCACGCAGCACACCATTCTCATCCTGTCTCACGGTACTGCCGTGCTCCTGTTCATACTCTACGTCGTCTACC TTATTTTCCAGCTCCGTACGCATAGCAATCTCTTTGATGCCGAACTCCAGAGCGCCGAGCGGCGGAATGCTGCAA ACTGCAACGGCCAAGACCACAATGGCCAAGGTCAGAACACGACGGGCCACCACAGCCAAGACGGCAATACGCAGC CCGAGGAGGACGAAGACGATGGACCGGTCATAGGTCCCATCTCCGCCGCTATCGTTCTCATCGTCACTACCATCC TTGTCGCCATTTGCGCACAGTATCTTGTCGGCAGTATAGACGCCGTTGTGAAGAAGGAAAACATTAGCAAGACAT TCATCGGACTGATCCTGATTCCGATTGTGGGCAACGCGGCCGAGCACGTCACCGCTGTTGTCGTCGCCATGCGCA ACAAGATGGATTTGGCCATGGGCGTCGCCATCGGCTCTTCTATCCAGATTGCACTCGGTCTAACCCCTTTCTTGG TCATAGTCGGTTGGATCATGGGCCAGCCAATGACGCTCCATTTCGAGACGTGTACGTGCCCTTTCCGCTGGACTC GATGGCTTGGGACGAGTCTGACACGATGATGCAGTTGCGACAGTGGCATTCGCCATTTCCGTTTTGGTTGCTACC TATGTGATACAGGATGGCAAATCCAACTACCTCGAAGGGGCTATGCTTATCGGTCTGTACATCATCATCGCCGTC GCTTTCTATGTCACGCCCAGCGATGCATTGCACAAGGTGCCGACGGCCGTCATCAGGGGTTGA |