Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1561
Gene name
Locationscaffold_156:17369..18877
Strand-
Gene length (bp)1508
Transcript length (bp)1038
Coding sequence length (bp)1035
Protein length (aa) 345

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 19 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 2.73 0.26 5.19
CcL In ants, during behavior modification 0.98 0.00 2.15
CcD In ants, recently dead 1.76 0.07 3.44

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.064381 no
SC16a CcD 0.372474 no
CcL CcD 0.302210 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1561
MFSDLSSIFWWLVRVAWEIPPPSSVASVYLYSSPRGLGDPKTLAPLMPTTSIVGRPIQARLRRAVLFPLLDEFLN
GGGLVTVVRLALVAEGSLESFERLLMRSHDLIERGLCGFGDGFVDGLVDGAFHGFIDRFGLGVHQIALRVDKCRS
ICRLMTGVAEVLDDETQWSQRRCHLFLYRLLHRFLNGLADIIDIQPPCQILSAGTRRVRGLPKRQVHGARAAETS
LSRRSIGCCRHREAAFCLQLLHGPLEARSPSIAIPHIVGQVLAHSGRCFGRQCAIQTSLSHNRSLSGFGGGKPSP
HKTSASFGPQPLSSMLARSARFAFDEVRGYMIASGRPDLLANVLY
Coding >Ophio5|1561
ATGTTTTCCGACCTCAGTTCAATTTTCTGGTGGTTGGTCCGCGTCGCTTGGGAAATTCCGCCTCCCTCTTCTGTA
GCCAGTGTTTATTTGTATTCTTCTCCACGCGGCCTTGGCGATCCCAAAACTCTTGCGCCTCTCATGCCGACTACC
TCCATTGTAGGACGACCGATTCAAGCTCGGCTCAGACGCGCTGTCTTGTTTCCGCTGCTCGATGAATTCCTGAAC
GGTGGCGGCCTGGTAACCGTCGTGAGACTTGCTCTGGTAGCTGAAGGAAGCCTGGAAAGCTTCGAGCGACTTCTG
ATGCGCAGCCACGACCTGATTGAGCGCGGACTGTGTGGCTTTGGTGACGGCTTCGTTGACGGCTTGGTCGACGGC
GCTTTTCACGGTTTTATCGATAGATTTGGTTTGGGAGTTCACCAGATTGCTCTGAGAGTCGACAAGTGTAGGTCG
ATCTGCCGGCTCATGACCGGCGTCGCTGAGGTCCTTGACGATGAGACGCAGTGGTCCCAGCGCCGCTGCCACCTG
TTTCTCTACCGCCTCCTCCACCGCTTCCTCAACGGCCTCGCGGATATCATCGACATCCAGCCGCCCTGCCAGATT
CTCAGCGCCGGCACTCGTCGCGTCCGAGGATTGCCGAAGCGTCAGGTCCACGGTGCCCGAGCCGCCGAGACCTCT
CTGAGCCGTCGGAGCATTGGATGCTGCCGCCACAGAGAGGCGGCTTTCTGCCTTCAACTCCTGCATGGCCCGCTC
GAAGCCCGGAGTCCAAGCATCGCTATTCCGCACATTGTCGGGCAGGTCCTTGCCCACAGCGGGCGCTGCTTCGGC
CGCCAATGCGCTATTCAAACGAGCCTGAGCCACAACCGATCTCTGAGTGGTTTCGGAGGCGGCAAGCCCTCTCCT
CATAAAACGAGTGCCTCCTTCGGGCCGCAACCTCTTAGTAGCATGCTGGCCCGATCTGCGAGGTTCGCCTTTGAC
GAAGTGCGCGGCTACATGATAGCTTCTGGCCGACCGGATCTCTTGGCTAACGTACTTTAT
Transcript >Ophio5|1561
ATGTTTTCCGACCTCAGTTCAATTTTCTGGTGGTTGGTCCGCGTCGCTTGGGAAATTCCGCCTCCCTCTTCTGTA
GCCAGTGTTTATTTGTATTCTTCTCCACGCGGCCTTGGCGATCCCAAAACTCTTGCGCCTCTCATGCCGACTACC
TCCATTGTAGGACGACCGATTCAAGCTCGGCTCAGACGCGCTGTCTTGTTTCCGCTGCTCGATGAATTCCTGAAC
GGTGGCGGCCTGGTAACCGTCGTGAGACTTGCTCTGGTAGCTGAAGGAAGCCTGGAAAGCTTCGAGCGACTTCTG
ATGCGCAGCCACGACCTGATTGAGCGCGGACTGTGTGGCTTTGGTGACGGCTTCGTTGACGGCTTGGTCGACGGC
GCTTTTCACGGTTTTATCGATAGATTTGGTTTGGGAGTTCACCAGATTGCTCTGAGAGTCGACAAGTGTAGGTCG
ATCTGCCGGCTCATGACCGGCGTCGCTGAGGTCCTTGACGATGAGACGCAGTGGTCCCAGCGCCGCTGCCACCTG
TTTCTCTACCGCCTCCTCCACCGCTTCCTCAACGGCCTCGCGGATATCATCGACATCCAGCCGCCCTGCCAGATT
CTCAGCGCCGGCACTCGTCGCGTCCGAGGATTGCCGAAGCGTCAGGTCCACGGTGCCCGAGCCGCCGAGACCTCT
CTGAGCCGTCGGAGCATTGGATGCTGCCGCCACAGAGAGGCGGCTTTCTGCCTTCAACTCCTGCATGGCCCGCTC
GAAGCCCGGAGTCCAAGCATCGCTATTCCGCACATTGTCGGGCAGGTCCTTGCCCACAGCGGGCGCTGCTTCGGC
CGCCAATGCGCTATTCAAACGAGCCTGAGCCACAACCGATCTCTGAGTGGTTTCGGAGGCGGCAAGCCCTCTCCT
CATAAAACGAGTGCCTCCTTCGGGCCGCAACCTCTTAGTAGCATGCTGGCCCGATCTGCGAGGTTCGCCTTTGAC
GAAGTGCGCGGCTACATGATAGCTTCTGGCCGACCGGATCTCTTGGCTAACGTACTTTATTGA
Gene >Ophio5|1561
ATGTTTTCCGACCTCGTCTCGATTGTTCCAGGACGAGCCTGAACTTCTTCATCTCTAGTAGTGTCCATAAAATGC
CGTATTTGAGTACAAACGGTATTGACGAGCGAGCTTGTCTGTGGAGCTAAGAAGTCAAGTGCTACAGAGTTCAAT
TTTCTGGTGGTTGGTCCGCGTCGCTTGGGAAATTCCGCCTCCCTCTTCTGTAGCCAGTGTTTATTTGTATGTACG
TGCATCATTATCGCATCTTCGTTTCTTCTATGTATTATTCCCTGCCTCTTATCCGACTCATCAGTCTTCTCCACG
CGGCCTTGGCGATCCCAAAACTCTTGCGCCTCTCATGCCGACTACCTCCATTGTAGGACGACCGATTCAAGCTCG
GCTCAGACGCGCTGTCTTGTTTCCGCTGCTCGATGAATTCCTGAACGGTGGCGGCCTGGTAACCGTCGTGAGACT
TGCTCTGGTAGCTGAAGGAAGCCTGGAAAGCTTCGAGCGACTTCTGATGCGCAGCCACGACCTGATTGAGCGCGG
ACTGTGTGGCTTTGGTGACGGCTTCGTTGACGGCTTGGTCGACGGCGCTTTTCACGGTTTTATCGATAGAGTTGG
GCAAGTTGACGATGACTTGCGATAGATGGCTGACGAGCTTGCACGTCACGGCAAGGTTGTCGTTGGCTGACTGGT
TGATCTTCGTATGGGCGTCCACCAGTTTGGTTTGGGAGTTCACCAGATTGCTCTGAGAGTCGACAAGGTTGGTCT
GGGCTCTCAATTGAGCACTGGCCAAATCAGAGTGCTGAAGGATGTCGCGGTAGTGTAGGTCGATCTGCCGGCTCA
TGACGTCGTTTTGCTCTTTCAGATCCGAGTTCTCGTGAACCGCTTCTTCAGCGGCGTCGCTGAGGTCCTTGACGA
TGAGACGCAGTGGTCCCAGCGCCGCTGCCACCTGTTTCTCTACCGCCTCCTCCACCGCTTCCTCAACGGCCTCGC
GGATATCATCGACATCCAGCCGCCCTGCCAGATTCTCAGCGCCGGCACTCGTCGCGTCCGAGGATTGCCGAAGCG
TCAGGTCCACGGTGCCCGAGCCGCCGAGACCTCTCTGAGCCGTCGGAGCATTGGATGCTGCCGCCACAGAGAGGC
GGCTTTCTGCCTTCAACTCCTGCATGGCCCGCTCGAAGCCCGGAGTCCAAGCATCGCTATTCCGCACATTGTCGG
GCAGGTCCTTGCCCACAGCGGGCGCTGCTTCGGCCGCCAATGCGCTATTCAAACGAGCCTGAGCCACAACCGATC
TCTGAGTGGTTTCGGAGGCGGCAAGCCCTCTCCTCATAAAACGAGTGCCTCCTTCGGGCCGCAACCTCTTAGTAG
CATGCTGGCCCGATCTGCGAGGTTCGCCTTTGACGAAGTGCGCGGCTGTAAGGAGATAGCCGTCGCCGCCATTGG
AGCCCTGACCGGCCGCTGACGTCGTCTTGATAGACATGATAGCTTCTGGCCGACCGGATCTCTTGGCTAACGTAC
TTTATTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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