© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|1553 |
| Gene name | |
| Location | scaffold_156:2761..4008 |
| Strand | + |
| Gene length (bp) | 1247 |
| Transcript length (bp) | 1083 |
| Coding sequence length (bp) | 1080 |
| Protein length (aa) | 360 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03152 | UFD1 | Ubiquitin fusion degradation protein UFD1 | 6.7E-47 | 68 | 190 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P53044|UFD1_YEAST | Ubiquitin fusion degradation protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UFD1 PE=1 SV=1 | 27 | 344 | 6.0E-76 |
| sp|O42915|UFD1_SCHPO | Ubiquitin fusion degradation protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ufd1 PE=2 SV=4 | 5 | 337 | 2.0E-71 |
| sp|Q9VTF9|UFD1_DROME | Ubiquitin fusion degradation protein 1 homolog OS=Drosophila melanogaster GN=Ufd1-like PE=2 SV=1 | 30 | 273 | 2.0E-51 |
| sp|Q92890|UFD1_HUMAN | Ubiquitin fusion degradation protein 1 homolog OS=Homo sapiens GN=UFD1L PE=1 SV=3 | 26 | 333 | 8.0E-49 |
| sp|Q9ES53|UFD1_RAT | Ubiquitin fusion degradation protein 1 homolog OS=Rattus norvegicus GN=Ufd1l PE=1 SV=1 | 26 | 333 | 1.0E-47 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P53044|UFD1_YEAST | Ubiquitin fusion degradation protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UFD1 PE=1 SV=1 | 27 | 344 | 6.0E-76 |
| sp|O42915|UFD1_SCHPO | Ubiquitin fusion degradation protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ufd1 PE=2 SV=4 | 5 | 337 | 2.0E-71 |
| sp|Q9VTF9|UFD1_DROME | Ubiquitin fusion degradation protein 1 homolog OS=Drosophila melanogaster GN=Ufd1-like PE=2 SV=1 | 30 | 273 | 2.0E-51 |
| sp|Q92890|UFD1_HUMAN | Ubiquitin fusion degradation protein 1 homolog OS=Homo sapiens GN=UFD1L PE=1 SV=3 | 26 | 333 | 8.0E-49 |
| sp|Q9ES53|UFD1_RAT | Ubiquitin fusion degradation protein 1 homolog OS=Rattus norvegicus GN=Ufd1l PE=1 SV=1 | 26 | 333 | 1.0E-47 |
| sp|P70362|UFD1_MOUSE | Ubiquitin fusion degradation protein 1 homolog OS=Mus musculus GN=Ufd1l PE=1 SV=2 | 26 | 333 | 1.0E-47 |
| sp|Q55BK0|UFD1_DICDI | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum GN=ufd1 PE=3 SV=1 | 31 | 191 | 7.0E-39 |
| sp|Q19584|UFD1_CAEEL | Ubiquitin fusion degradation protein 1 homolog OS=Caenorhabditis elegans GN=ufd-1 PE=3 SV=1 | 32 | 329 | 4.0E-34 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006511 | ubiquitin-dependent protein catabolic process | Yes |
| GO:0009987 | cellular process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006508 | proteolysis | No |
| GO:0019941 | modification-dependent protein catabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044265 | cellular macromolecule catabolic process | No |
| GO:0019538 | protein metabolic process | No |
| GO:0009056 | catabolic process | No |
| GO:0051603 | proteolysis involved in protein catabolic process | No |
| GO:0044248 | cellular catabolic process | No |
| GO:0009057 | macromolecule catabolic process | No |
| GO:1901575 | organic substance catabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0043632 | modification-dependent macromolecule catabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 63 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1553 MYSGFGGGYDPTNPDHLYNLARHGRRNLTQRFDEYYRCYPVIMAPGAVRPDLNYGSKIILPPSALDKGKHSHAGV LEFIAEEGRAYIPQWMLETLEMDVGDMIQIRTTSLELAKMVKLQPQSVSFLEISDPRAVLERAFRNFATLTKGDV FSFEYNDEVFQVAVLDVKPETDKMGVSMIETDVSVEFAPPLGYVEPERKSGTSTPRSTRGGIPAGGLVHSQGTMA QAINYSAIAPSATGSTTSFLGEGQRLAKKGSKNTTPKPATPVPAETIAVSKRPTGTAPAPLRLAPNKLFFGYEIK PVKTVEDKIKEREEAERPHFAGQGQNLRGTAKRKGNGDDKSKAPDKKGTGEGRRRDDGGP |
| Coding | >Ophio5|1553 ATGTACTCCGGCTTCGGCGGCGGCTATGACCCGACCAACCCAGACCACCTATACAACCTGGCCCGCCATGGCCGA CGAAACTTGACGCAGCGCTTCGATGAGTACTACAGATGCTATCCCGTCATCATGGCTCCAGGCGCCGTGCGTCCG GACCTCAACTACGGCTCCAAGATCATCCTTCCGCCGTCGGCTCTGGACAAGGGGAAGCACTCTCATGCCGGTGTG CTTGAGTTCATCGCAGAAGAGGGACGTGCCTACATCCCGCAATGGATGCTGGAGACGCTCGAGATGGACGTGGGA GACATGATACAGATCCGGACAACATCGCTCGAGCTGGCCAAGATGGTCAAGCTGCAGCCGCAGTCGGTCAGCTTC CTCGAAATCAGCGATCCGCGAGCCGTTCTCGAGAGGGCATTTAGGAACTTTGCCACTCTCACGAAAGGCGACGTC TTCAGCTTTGAGTACAACGACGAGGTCTTCCAAGTGGCCGTCTTGGACGTCAAGCCGGAGACGGACAAGATGGGC GTCAGCATGATCGAGACGGACGTGTCAGTCGAATTCGCTCCTCCGCTCGGGTACGTCGAGCCCGAGAGGAAAAGC GGGACGAGCACGCCGCGCAGCACCCGCGGCGGTATCCCGGCCGGGGGCCTCGTCCACAGCCAGGGGACCATGGCT CAGGCCATCAACTACAGCGCCATCGCCCCGTCCGCCACAGGCAGCACCACGAGCTTCCTCGGCGAGGGTCAGCGT CTCGCCAAAAAGGGCAGCAAGAATACGACGCCTAAGCCGGCCACACCGGTGCCAGCCGAGACCATCGCCGTGTCC AAGCGGCCAACAGGCACGGCACCGGCGCCGCTGCGGCTGGCCCCGAATAAGCTCTTCTTCGGATACGAGATCAAA CCCGTCAAGACGGTCGAGGACAAGATTAAGGAGAGAGAGGAAGCCGAGAGGCCTCACTTTGCCGGCCAAGGGCAA AATCTCCGCGGTACAGCCAAGAGGAAGGGGAATGGGGACGACAAGTCCAAGGCACCGGACAAAAAAGGAACTGGG GAGGGCCGTCGACGGGACGATGGTGGGCCA |
| Transcript | >Ophio5|1553 ATGTACTCCGGCTTCGGCGGCGGCTATGACCCGACCAACCCAGACCACCTATACAACCTGGCCCGCCATGGCCGA CGAAACTTGACGCAGCGCTTCGATGAGTACTACAGATGCTATCCCGTCATCATGGCTCCAGGCGCCGTGCGTCCG GACCTCAACTACGGCTCCAAGATCATCCTTCCGCCGTCGGCTCTGGACAAGGGGAAGCACTCTCATGCCGGTGTG CTTGAGTTCATCGCAGAAGAGGGACGTGCCTACATCCCGCAATGGATGCTGGAGACGCTCGAGATGGACGTGGGA GACATGATACAGATCCGGACAACATCGCTCGAGCTGGCCAAGATGGTCAAGCTGCAGCCGCAGTCGGTCAGCTTC CTCGAAATCAGCGATCCGCGAGCCGTTCTCGAGAGGGCATTTAGGAACTTTGCCACTCTCACGAAAGGCGACGTC TTCAGCTTTGAGTACAACGACGAGGTCTTCCAAGTGGCCGTCTTGGACGTCAAGCCGGAGACGGACAAGATGGGC GTCAGCATGATCGAGACGGACGTGTCAGTCGAATTCGCTCCTCCGCTCGGGTACGTCGAGCCCGAGAGGAAAAGC GGGACGAGCACGCCGCGCAGCACCCGCGGCGGTATCCCGGCCGGGGGCCTCGTCCACAGCCAGGGGACCATGGCT CAGGCCATCAACTACAGCGCCATCGCCCCGTCCGCCACAGGCAGCACCACGAGCTTCCTCGGCGAGGGTCAGCGT CTCGCCAAAAAGGGCAGCAAGAATACGACGCCTAAGCCGGCCACACCGGTGCCAGCCGAGACCATCGCCGTGTCC AAGCGGCCAACAGGCACGGCACCGGCGCCGCTGCGGCTGGCCCCGAATAAGCTCTTCTTCGGATACGAGATCAAA CCCGTCAAGACGGTCGAGGACAAGATTAAGGAGAGAGAGGAAGCCGAGAGGCCTCACTTTGCCGGCCAAGGGCAA AATCTCCGCGGTACAGCCAAGAGGAAGGGGAATGGGGACGACAAGTCCAAGGCACCGGACAAAAAAGGAACTGGG GAGGGCCGTCGACGGGACGATGGTGGGCCATAA |
| Gene | >Ophio5|1553 ATGGTACGCAATCCGTCCGCTACTCTCAGCGAAATCTGACAGAGTGTCTAGTACTCCGGCTTCGGCGGCGGCTAT GACCCGACCAACCCAGACCACCTATACAACCTGGCCCGCCATGGCCGACGAAACTTGACGCAGCGCTTCGATGAG TACTACAGATGCTATCCCGTCATCATGGCTCCAGGCGCCGTGCGTCCGGACCTCAACTACGGCTCCAAGATCATC CTTCCGCCGTCGGCTCTGGACAAGGTCTCCAAGCTCCACGTCCAGTGGCCTCTTTTGATGGAGATGATTAACGGC GAAAAGGGGAAGCACTCTCATGCCGGTGTGCTTGAGTTCATCGCAGAAGAGGGACGTGCCTACATCCCGCAATGG GTTCGTTATATCCGATTCCCTTACTGAACTGGCCCTCAAGCTGACCAGAGCGCGGGCAGATGCTGGAGACGCTCG AGATGGACGTGGGAGACATGATACAGATCCGGACAACATCGCTCGAGCTGGCCAAGATGGTCAAGCTGCAGCCGC AGTCGGTCAGCTTCCTCGAAATCAGCGATCCGCGAGCCGTTCTCGAGAGGGCATTTAGGAACTTTGCCACTCTCA CGAAAGGCGACGTCTTCAGCTTTGAGTACAACGACGAGGTCTTCCAAGTGGCCGTCTTGGACGTCAAGCCGGAGA CGGACAAGATGGGCGTCAGCATGATCGAGACGGACGTGTCAGTCGAATTCGCTCCTCCGCTCGGGTACGTCGAGC CCGAGAGGAAAAGCGGGACGAGCACGCCGCGCAGCACCCGCGGCGGTATCCCGGCCGGGGGCCTCGTCCACAGCC AGGGGACCATGGCTCAGGCCATCAACTACAGCGCCATCGCCCCGTCCGCCACAGGCAGCACCACGAGCTTCCTCG GCGAGGGTCAGCGTCTCGCCAAAAAGGGCAGCAAGAATACGACGCCTAAGCCGGCCACACCGGTGCCAGCCGAGA CCATCGCCGTGTCCAAGCGGCCAACAGGCACGGCACCGGCGCCGCTGCGGCTGGCCCCGAATAAGCTCTTCTTCG GATACGAGATCAAACCCGTCAAGACGGTCGAGGACAAGATTAAGGAGAGAGAGGAAGCCGAGAGGCCTCACTTTG CCGGCCAAGGGCAAAATCTCCGCGGTACAGCCAAGAGGAAGGGGAATGGGGACGACAAGTCCAAGGCACCGGACA AAAAAGGAACTGGGGAGGGCCGTCGACGGGACGATGGTGGGCCATAA |