Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1543
Gene name
Locationscaffold_155:21423..23433
Strand-
Gene length (bp)2010
Transcript length (bp)1950
Coding sequence length (bp)1947
Protein length (aa) 649

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04157 EAP30 EAP30/Vps36 family 6.6E-42 368 608
PF11605 Vps36_ESCRT-II Vacuolar protein sorting protein 36 Vps36 7.1E-23 9 91
PF16988 Vps36-NZF-N Vacuolar protein sorting 36 NZF-N zinc-finger domain 1.9E-22 137 195

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q7ZVK4|VPS36_DANRE Vacuolar protein-sorting-associated protein 36 OS=Danio rerio GN=vps36 PE=2 SV=1 281 618 2.0E-40
sp|A5PK00|VPS36_BOVIN Vacuolar protein-sorting-associated protein 36 OS=Bos taurus GN=VPS36 PE=2 SV=1 232 618 6.0E-40
sp|Q6DDF4|VPS36_XENLA Vacuolar protein-sorting-associated protein 36 OS=Xenopus laevis GN=vps36 PE=2 SV=1 232 618 9.0E-40
sp|Q86VN1|VPS36_HUMAN Vacuolar protein-sorting-associated protein 36 OS=Homo sapiens GN=VPS36 PE=1 SV=1 232 618 6.0E-39
sp|P0C0A2|VPS36_RAT Vacuolar protein-sorting-associated protein 36 OS=Rattus norvegicus GN=Vps36 PE=1 SV=1 232 618 7.0E-39
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Swissprot ID Swissprot Description Start End E-value
sp|Q7ZVK4|VPS36_DANRE Vacuolar protein-sorting-associated protein 36 OS=Danio rerio GN=vps36 PE=2 SV=1 281 618 2.0E-40
sp|A5PK00|VPS36_BOVIN Vacuolar protein-sorting-associated protein 36 OS=Bos taurus GN=VPS36 PE=2 SV=1 232 618 6.0E-40
sp|Q6DDF4|VPS36_XENLA Vacuolar protein-sorting-associated protein 36 OS=Xenopus laevis GN=vps36 PE=2 SV=1 232 618 9.0E-40
sp|Q86VN1|VPS36_HUMAN Vacuolar protein-sorting-associated protein 36 OS=Homo sapiens GN=VPS36 PE=1 SV=1 232 618 6.0E-39
sp|P0C0A2|VPS36_RAT Vacuolar protein-sorting-associated protein 36 OS=Rattus norvegicus GN=Vps36 PE=1 SV=1 232 618 7.0E-39
sp|Q91XD6|VPS36_MOUSE Vacuolar protein-sorting-associated protein 36 OS=Mus musculus GN=Vps36 PE=1 SV=1 232 618 1.0E-38
sp|O43038|VPS36_SCHPO Vacuolar protein-sorting-associated protein 36 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps36 PE=3 SV=1 5 621 9.0E-38
sp|Q06696|VPS36_YEAST Vacuolar protein-sorting-associated protein 36 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS36 PE=1 SV=1 2 618 3.0E-35
sp|Q9FF81|VPS36_ARATH Vacuolar protein sorting-associated protein 36 OS=Arabidopsis thaliana GN=VPS36 PE=1 SV=1 363 618 1.0E-33
sp|Q9VU87|VPS36_DROME Vacuolar protein-sorting-associated protein 36 OS=Drosophila melanogaster GN=Vps36 PE=2 SV=2 285 620 2.0E-25
sp|Q54T18|VPS36_DICDI Vacuolar protein-sorting-associated protein 36 OS=Dictyostelium discoideum GN=vps36 PE=3 SV=1 363 612 1.0E-23
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GO

GO Term Description Terminal node
GO:0043130 ubiquitin binding Yes
GO:0032266 phosphatidylinositol-3-phosphate binding Yes
GO:1901981 phosphatidylinositol phosphate binding No
GO:0005488 binding No
GO:0005543 phospholipid binding No
GO:0005515 protein binding No
GO:0032182 ubiquitin-like protein binding No
GO:0003674 molecular_function No
GO:0008289 lipid binding No
GO:0035091 phosphatidylinositol binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1543
MFLKHIDLTTALRPSYLPDEVLLFVQDNVGLYEGKLKLPDQQNGQVYLTSHRICYVDKNEPRANSLALELKHIDR
FELYAGFLKSSAKITLIPKPLKRSSLDPRVKLEAASLSRISSASPGLRDGVFRPPSVPPPLTTATWVCTICSFSN
PTPVNFDPSVANAYTPLPPCLACGIKPTLSHVLKAAISNASNRSSPVPALASSPALVARSKASDLALQAAGSDLS
IQTAGSRGVPLSGTDATTAFKCPRCTFSNHPSLLSCEMCGASLLSQPISLLEQDQAARTQSPGPVREHKGTAASA
GIDASEGIKISFRSGGDKIFHERLKGAMTQRKWLLQGAPPVPRGSRRVDDGNADDSSDATPGGKLKTAGIAGLEQ
LGLNMRKNTELLIGSAFEDLEALMSSAKEVVALAERLARQNSGANGGASAEEYAILAESASQLGLVTTKDMVGGG
GGSESLYLSELSRNVAEFLSDDSRGVLKRAGGIITLVDLWAMFNRARGGVELVSPMDFEKAARLWETLRLPVRLR
TFRSGVMVVQSHDRTDETTIRALLAWLQDLHEFPPERETPWDWREFGRGVTAQEAAERFGWSIGVADEELLMAEE
HGALCRDEGLEGLKFWQNYIDSGEGVPPKSQASQDEEAILTALKESGLY
Coding >Ophio5|1543
ATGTTTTTAAAACACATAGACTTGACCACAGCGCTCCGGCCCTCGTATCTACCCGATGAGGTGCTGTTGTTTGTG
CAGGACAATGTCGGTCTCTACGAAGGCAAGCTCAAGCTTCCAGACCAGCAGAACGGCCAGGTCTACCTGACATCC
CATCGAATATGCTATGTCGACAAGAATGAGCCGCGTGCCAACTCGCTGGCCCTCGAGTTGAAGCATATCGACAGG
TTCGAATTGTACGCCGGATTCCTCAAGTCCTCGGCCAAGATCACTCTCATCCCGAAGCCCCTGAAGCGCTCCTCG
CTTGATCCCCGAGTCAAATTGGAGGCAGCCTCTTTGTCGAGGATCAGTTCCGCGTCGCCGGGCCTTCGAGACGGC
GTTTTCAGGCCTCCATCCGTACCGCCTCCCCTCACGACGGCAACTTGGGTCTGCACAATATGCAGCTTTTCCAAC
CCGACGCCCGTCAACTTCGATCCGTCCGTCGCCAACGCCTACACACCTCTCCCGCCGTGTCTAGCCTGCGGTATT
AAGCCGACACTGTCTCACGTGCTCAAGGCGGCAATCTCCAACGCCAGTAACCGGTCGTCGCCCGTTCCCGCTCTC
GCGAGCAGCCCGGCCCTCGTGGCTCGGAGTAAGGCTTCCGACCTCGCCCTGCAAGCAGCTGGGTCCGATCTTTCT
ATACAGACTGCGGGCTCCCGAGGCGTACCTTTGTCTGGCACGGACGCCACCACCGCATTCAAGTGCCCGCGATGT
ACCTTTTCCAATCACCCTTCGTTACTGTCGTGCGAGATGTGCGGTGCTTCACTGCTGTCCCAGCCTATTTCGCTC
CTGGAGCAGGACCAGGCTGCCAGAACGCAGTCGCCCGGGCCGGTTCGGGAGCACAAGGGTACGGCTGCATCGGCC
GGCATCGACGCCTCGGAGGGAATCAAAATATCCTTTCGCAGCGGCGGGGACAAGATATTCCATGAGAGGCTCAAG
GGTGCCATGACGCAGAGGAAATGGCTCCTGCAAGGCGCCCCGCCGGTGCCCAGGGGCAGTCGCAGGGTTGACGAC
GGCAACGCCGACGACTCGTCCGATGCTACTCCCGGCGGCAAGCTCAAGACGGCCGGCATAGCAGGTCTAGAGCAG
CTGGGGCTCAACATGCGCAAGAACACGGAGCTACTGATAGGCAGCGCCTTCGAGGATCTCGAGGCGCTCATGTCA
TCGGCAAAGGAGGTTGTCGCTCTGGCAGAGCGGCTAGCCCGCCAGAATAGCGGAGCCAACGGCGGCGCCTCGGCA
GAGGAATACGCGATCCTGGCCGAGTCGGCAAGCCAGCTGGGGCTGGTGACGACCAAGGACATGGTCGGTGGCGGT
GGCGGCTCCGAGTCGCTTTACCTCTCCGAGCTCTCGCGAAACGTGGCCGAGTTTCTGTCCGACGACTCCAGAGGC
GTGCTCAAGAGGGCGGGAGGCATCATCACCCTCGTCGACCTCTGGGCCATGTTCAACCGGGCCAGGGGCGGCGTC
GAGCTCGTCAGCCCCATGGACTTTGAAAAGGCAGCACGCCTCTGGGAGACGCTCAGGCTGCCGGTGCGGCTGCGT
ACATTCCGCAGCGGCGTCATGGTGGTGCAGAGTCACGATCGAACCGACGAGACGACAATCCGCGCCCTCCTCGCC
TGGCTGCAAGACCTTCACGAGTTCCCGCCCGAGCGCGAGACCCCCTGGGACTGGCGTGAATTCGGGCGCGGTGTC
ACGGCGCAGGAGGCGGCCGAGCGCTTCGGCTGGAGCATTGGCGTCGCAGACGAGGAGCTGCTCATGGCCGAGGAA
CACGGGGCGCTGTGTCGAGACGAGGGCCTTGAGGGCCTCAAGTTTTGGCAGAACTACATCGACTCGGGCGAGGGT
GTGCCGCCCAAGAGCCAGGCCAGTCAGGACGAGGAGGCCATCCTCACTGCGCTCAAGGAGAGCGGCCTGTAT
Transcript >Ophio5|1543
ATGTTTTTAAAACACATAGACTTGACCACAGCGCTCCGGCCCTCGTATCTACCCGATGAGGTGCTGTTGTTTGTG
CAGGACAATGTCGGTCTCTACGAAGGCAAGCTCAAGCTTCCAGACCAGCAGAACGGCCAGGTCTACCTGACATCC
CATCGAATATGCTATGTCGACAAGAATGAGCCGCGTGCCAACTCGCTGGCCCTCGAGTTGAAGCATATCGACAGG
TTCGAATTGTACGCCGGATTCCTCAAGTCCTCGGCCAAGATCACTCTCATCCCGAAGCCCCTGAAGCGCTCCTCG
CTTGATCCCCGAGTCAAATTGGAGGCAGCCTCTTTGTCGAGGATCAGTTCCGCGTCGCCGGGCCTTCGAGACGGC
GTTTTCAGGCCTCCATCCGTACCGCCTCCCCTCACGACGGCAACTTGGGTCTGCACAATATGCAGCTTTTCCAAC
CCGACGCCCGTCAACTTCGATCCGTCCGTCGCCAACGCCTACACACCTCTCCCGCCGTGTCTAGCCTGCGGTATT
AAGCCGACACTGTCTCACGTGCTCAAGGCGGCAATCTCCAACGCCAGTAACCGGTCGTCGCCCGTTCCCGCTCTC
GCGAGCAGCCCGGCCCTCGTGGCTCGGAGTAAGGCTTCCGACCTCGCCCTGCAAGCAGCTGGGTCCGATCTTTCT
ATACAGACTGCGGGCTCCCGAGGCGTACCTTTGTCTGGCACGGACGCCACCACCGCATTCAAGTGCCCGCGATGT
ACCTTTTCCAATCACCCTTCGTTACTGTCGTGCGAGATGTGCGGTGCTTCACTGCTGTCCCAGCCTATTTCGCTC
CTGGAGCAGGACCAGGCTGCCAGAACGCAGTCGCCCGGGCCGGTTCGGGAGCACAAGGGTACGGCTGCATCGGCC
GGCATCGACGCCTCGGAGGGAATCAAAATATCCTTTCGCAGCGGCGGGGACAAGATATTCCATGAGAGGCTCAAG
GGTGCCATGACGCAGAGGAAATGGCTCCTGCAAGGCGCCCCGCCGGTGCCCAGGGGCAGTCGCAGGGTTGACGAC
GGCAACGCCGACGACTCGTCCGATGCTACTCCCGGCGGCAAGCTCAAGACGGCCGGCATAGCAGGTCTAGAGCAG
CTGGGGCTCAACATGCGCAAGAACACGGAGCTACTGATAGGCAGCGCCTTCGAGGATCTCGAGGCGCTCATGTCA
TCGGCAAAGGAGGTTGTCGCTCTGGCAGAGCGGCTAGCCCGCCAGAATAGCGGAGCCAACGGCGGCGCCTCGGCA
GAGGAATACGCGATCCTGGCCGAGTCGGCAAGCCAGCTGGGGCTGGTGACGACCAAGGACATGGTCGGTGGCGGT
GGCGGCTCCGAGTCGCTTTACCTCTCCGAGCTCTCGCGAAACGTGGCCGAGTTTCTGTCCGACGACTCCAGAGGC
GTGCTCAAGAGGGCGGGAGGCATCATCACCCTCGTCGACCTCTGGGCCATGTTCAACCGGGCCAGGGGCGGCGTC
GAGCTCGTCAGCCCCATGGACTTTGAAAAGGCAGCACGCCTCTGGGAGACGCTCAGGCTGCCGGTGCGGCTGCGT
ACATTCCGCAGCGGCGTCATGGTGGTGCAGAGTCACGATCGAACCGACGAGACGACAATCCGCGCCCTCCTCGCC
TGGCTGCAAGACCTTCACGAGTTCCCGCCCGAGCGCGAGACCCCCTGGGACTGGCGTGAATTCGGGCGCGGTGTC
ACGGCGCAGGAGGCGGCCGAGCGCTTCGGCTGGAGCATTGGCGTCGCAGACGAGGAGCTGCTCATGGCCGAGGAA
CACGGGGCGCTGTGTCGAGACGAGGGCCTTGAGGGCCTCAAGTTTTGGCAGAACTACATCGACTCGGGCGAGGGT
GTGCCGCCCAAGAGCCAGGCCAGTCAGGACGAGGAGGCCATCCTCACTGCGCTCAAGGAGAGCGGCCTGTATTAG
Gene >Ophio5|1543
ATGTTTTTAAAACACATAGACTTGACCACAGCGCTCCGGCCCTCGTATCTACCCGATGAGGTGCTGTTGTTTGTG
CAGGACAATGTCGGTCTCTACGAAGGGTGCGTGGCCTCTACGAGTCCAGCCCTGCCTCGCCCGCCCCGTTGACGT
GTCACTCCCAGCAAGCTCAAGCTTCCAGACCAGCAGAACGGCCAGGTCTACCTGACATCCCATCGAATATGCTAT
GTCGACAAGAATGAGCCGCGTGCCAACTCGCTGGCCCTCGAGTTGAAGCATATCGACAGGTTCGAATTGTACGCC
GGATTCCTCAAGTCCTCGGCCAAGATCACTCTCATCCCGAAGCCCCTGAAGCGCTCCTCGCTTGATCCCCGAGTC
AAATTGGAGGCAGCCTCTTTGTCGAGGATCAGTTCCGCGTCGCCGGGCCTTCGAGACGGCGTTTTCAGGCCTCCA
TCCGTACCGCCTCCCCTCACGACGGCAACTTGGGTCTGCACAATATGCAGCTTTTCCAACCCGACGCCCGTCAAC
TTCGATCCGTCCGTCGCCAACGCCTACACACCTCTCCCGCCGTGTCTAGCCTGCGGTATTAAGCCGACACTGTCT
CACGTGCTCAAGGCGGCAATCTCCAACGCCAGTAACCGGTCGTCGCCCGTTCCCGCTCTCGCGAGCAGCCCGGCC
CTCGTGGCTCGGAGTAAGGCTTCCGACCTCGCCCTGCAAGCAGCTGGGTCCGATCTTTCTATACAGACTGCGGGC
TCCCGAGGCGTACCTTTGTCTGGCACGGACGCCACCACCGCATTCAAGTGCCCGCGATGTACCTTTTCCAATCAC
CCTTCGTTACTGTCGTGCGAGATGTGCGGTGCTTCACTGCTGTCCCAGCCTATTTCGCTCCTGGAGCAGGACCAG
GCTGCCAGAACGCAGTCGCCCGGGCCGGTTCGGGAGCACAAGGGTACGGCTGCATCGGCCGGCATCGACGCCTCG
GAGGGAATCAAAATATCCTTTCGCAGCGGCGGGGACAAGATATTCCATGAGAGGCTCAAGGGTGCCATGACGCAG
AGGAAATGGCTCCTGCAAGGCGCCCCGCCGGTGCCCAGGGGCAGTCGCAGGGTTGACGACGGCAACGCCGACGAC
TCGTCCGATGCTACTCCCGGCGGCAAGCTCAAGACGGCCGGCATAGCAGGTCTAGAGCAGCTGGGGCTCAACATG
CGCAAGAACACGGAGCTACTGATAGGCAGCGCCTTCGAGGATCTCGAGGCGCTCATGTCATCGGCAAAGGAGGTT
GTCGCTCTGGCAGAGCGGCTAGCCCGCCAGAATAGCGGAGCCAACGGCGGCGCCTCGGCAGAGGAATACGCGATC
CTGGCCGAGTCGGCAAGCCAGCTGGGGCTGGTGACGACCAAGGACATGGTCGGTGGCGGTGGCGGCTCCGAGTCG
CTTTACCTCTCCGAGCTCTCGCGAAACGTGGCCGAGTTTCTGTCCGACGACTCCAGAGGCGTGCTCAAGAGGGCG
GGAGGCATCATCACCCTCGTCGACCTCTGGGCCATGTTCAACCGGGCCAGGGGCGGCGTCGAGCTCGTCAGCCCC
ATGGACTTTGAAAAGGCAGCACGCCTCTGGGAGACGCTCAGGCTGCCGGTGCGGCTGCGTACATTCCGCAGCGGC
GTCATGGTGGTGCAGAGTCACGATCGAACCGACGAGACGACAATCCGCGCCCTCCTCGCCTGGCTGCAAGACCTT
CACGAGTTCCCGCCCGAGCGCGAGACCCCCTGGGACTGGCGTGAATTCGGGCGCGGTGTCACGGCGCAGGAGGCG
GCCGAGCGCTTCGGCTGGAGCATTGGCGTCGCAGACGAGGAGCTGCTCATGGCCGAGGAACACGGGGCGCTGTGT
CGAGACGAGGGCCTTGAGGGCCTCAAGTTTTGGCAGAACTACATCGACTCGGGCGAGGGTGTGCCGCCCAAGAGC
CAGGCCAGTCAGGACGAGGAGGCCATCCTCACTGCGCTCAAGGAGAGCGGCCTGTATTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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