Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1540
Gene name
Locationscaffold_155:18925..19257
Strand+
Gene length (bp)332
Transcript length (bp)222
Coding sequence length (bp)219
Protein length (aa) 73

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF11022 ATP19 ATP synthase subunit K 7.0E-27 5 69

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|C6Y4A3|ATP19_SCHPO ATP synthase subunit K, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=atp19 PE=2 SV=1 4 68 8.0E-08

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 34 0.5

Transmembrane Domains

Domain # Start End Length
1 15 34 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1540
MGGLSYYTIAGRQVGSHYIVMAWLGTLAGGVWYATSGPKKTATAATPPIQASSSDEADFIKRFMEEQEKQEKK
Coding >Ophio5|1540
ATGGGTGGCCTCTCCTATTATACGATTGCCGGCCGCCAAGTCGGCAGCCACTACATTGTCATGGCCTGGCTAGGC
ACTCTCGCTGGCGGCGTCTGGTATGCGACGTCGGGCCCGAAGAAAACGGCGACGGCGGCGACGCCCCCTATACAA
GCATCGAGCTCGGACGAGGCCGACTTCATCAAGAGATTTATGGAGGAGCAGGAGAAGCAAGAAAAGAAG
Transcript >Ophio5|1540
ATGGGTGGCCTCTCCTATTATACGATTGCCGGCCGCCAAGTCGGCAGCCACTACATTGTCATGGCCTGGCTAGGC
ACTCTCGCTGGCGGCGTCTGGTATGCGACGTCGGGCCCGAAGAAAACGGCGACGGCGGCGACGCCCCCTATACAA
GCATCGAGCTCGGACGAGGCCGACTTCATCAAGAGATTTATGGAGGAGCAGGAGAAGCAAGAAAAGAAGTAA
Gene >Ophio5|1540
ATGGGTGGCCTCTCCTATTATACGATTGCCGGCCGCCAAGTCGGCAGCCACTACGTTCGTGCGGCCAACTTCCGA
CGCGCCTAAAGAGAAGGACTGACAGGGCACCACAGATTGTCATGGCCTGGCTAGGCACTCTCGCTGGCGGCGTCT
GGTATGCGACGTCGGGCCCGAAGAAAACGGCGACGGCGGCGACGCCCCCTATACAAGCATCGAGCTCGGACGAGG
CCGACTTCATCAAGTGGGTGGCTTGACCCGACGACTGGAGCGTCGTGTAAGCTGACGAATCCCATAGGAGATTTA
TGGAGGAGCAGGAGAAGCAAGAAAAGAAGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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