© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|1528 |
| Gene name | |
| Location | scaffold_154:31749..33361 |
| Strand | - |
| Gene length (bp) | 1612 |
| Transcript length (bp) | 1254 |
| Coding sequence length (bp) | 1251 |
| Protein length (aa) | 417 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01480 | PWI | PWI domain | 6.7E-31 | 28 | 98 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5ZMJ9|SRRM1_CHICK | Serine/arginine repetitive matrix protein 1 OS=Gallus gallus GN=SRRM1 PE=2 SV=1 | 15 | 139 | 1.0E-28 |
| sp|Q52KI8|SRRM1_MOUSE | Serine/arginine repetitive matrix protein 1 OS=Mus musculus GN=Srrm1 PE=1 SV=2 | 15 | 143 | 2.0E-28 |
| sp|Q5R5Q2|SRRM1_PONAB | Serine/arginine repetitive matrix protein 1 OS=Pongo abelii GN=SRRM1 PE=2 SV=1 | 15 | 143 | 3.0E-28 |
| sp|Q8IYB3|SRRM1_HUMAN | Serine/arginine repetitive matrix protein 1 OS=Homo sapiens GN=SRRM1 PE=1 SV=2 | 15 | 143 | 3.0E-28 |
| sp|Q9USH5|YJQ5_SCHPO | PWI domain-containing protein C825.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC825.05c PE=1 SV=1 | 2 | 184 | 5.0E-26 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006397 | mRNA processing | Yes |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0016071 | mRNA metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0006396 | RNA processing | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0009987 | cellular process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 67 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 206 | 223 | 17 |
| 2 | 243 | 265 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1528 MDARLLKSTKFPPEFNQKVDMEKVNLHVMKKWITKRISEILGNDDDVVIELCFNLIEASRYPDVKSLQIQLTGFL DKDTAMFCKELWNLLLSGQSSPQGVPKELLEAKKLELIQEKMDADRAANARQSRDAQGSDERERRDSKPLADSWH AQGRPGDRAFGNRSRGGHVRGGQRSPSPGPRAREVAASQLRDAIATDRRLPRSRRALALAAAACLAAVDAVTLPR DADCPLRDTSVSERGAGLPALVLVLLVAVLTAAAAAWLVAVPAQARLRGRQLSSADVGPGREARRQAVTAGTIRR RPTPAVGGIIAAATGATIQSATTIAVSHLWIDAETDAASRRTTTMRTDVAEDEAKVDVAGAAGLARVDKTIPTGG MTLVPPLLSRPLRTIKQRKRLSRLSGKKACLRRNFYGRRFSR |
| Coding | >Ophio5|1528 ATGGATGCCCGACTTCTAAAGTCGACCAAGTTCCCGCCTGAGTTCAACCAAAAGGTCGACATGGAGAAGGTCAAC CTCCATGTCATGAAAAAATGGATCACCAAGAGAATCTCGGAGATTCTCGGAAACGATGACGATGTCGTGATTGAG CTGTGCTTCAACCTTATCGAAGCCTCTCGATACCCGGACGTCAAGTCACTGCAGATCCAGCTCACCGGATTTCTC GACAAAGACACCGCCATGTTCTGCAAAGAGCTTTGGAACCTACTGCTCAGCGGCCAGAGCAGCCCTCAGGGCGTG CCCAAGGAGCTACTGGAGGCAAAAAAACTAGAGCTCATACAAGAAAAGATGGACGCCGATCGGGCCGCAAACGCC CGTCAGAGCCGCGACGCGCAGGGATCCGACGAGCGAGAGCGTCGCGACTCGAAGCCGCTTGCGGACTCTTGGCAC GCGCAGGGCCGCCCTGGTGATCGTGCTTTCGGCAACCGCAGTCGGGGTGGCCATGTCCGAGGGGGGCAACGATCG CCGTCGCCGGGACCCAGAGCTCGTGAGGTCGCCGCGAGCCAGCTCCGAGACGCTATCGCGACCGATCGCCGTCTG CCGAGGAGTCGTCGCGCTCTCGCTCTCGCAGCCGCAGCATGTCTCGCGGCAGTCGACGCTGTCACACTCCCCCGA GACGCAGACTGTCCCCTGCGCGATACGAGCGTTTCCGAAAGAGGAGCAGGTCTCCCCGCCCTGGTTCTCGTTCTG CTCGTCGCGGTATTGACAGCCGCGGCCGCCGCTTGGCTCGTGGCCGTTCCCGCTCAAGCTCGTCTGAGAGGTCGC CAGCTGTCAAGCGCAGACGTCGGTCCTGGTCGCGAAGCGCGTCGGCAGGCCGTTACCGCAGGCACTATTCGTCGT CGCCCCACTCCCGCAGTCGGAGGGATTATCGCAGCCGCCACAGGAGCCACGATTCAGAGCGCAACTACCATCGCC GTGAGTCACCTGTGGATAGACGCCGAGACAGACGCAGCTTCTCGCCGGACAACGACCATGAGAACGGACGTCGCC GAGGACGAGGCAAAGGTCGACGTGGCAGGGGCCGCCGGTCTCGCAAGGGTGGACAAGACAATTCCCACCGGAGGC ATGACCCTCGTGCCGCCTCTCCTAAGCCGACCGCTTCGAACGATCAAACAGAGAAAGAGACTCAGTCGTCTCTCC GGGAAGAAAGCTTGCTTAAGGAGAAACTTCTACGGGAGAAGATTCTCAAGA |
| Transcript | >Ophio5|1528 ATGGATGCCCGACTTCTAAAGTCGACCAAGTTCCCGCCTGAGTTCAACCAAAAGGTCGACATGGAGAAGGTCAAC CTCCATGTCATGAAAAAATGGATCACCAAGAGAATCTCGGAGATTCTCGGAAACGATGACGATGTCGTGATTGAG CTGTGCTTCAACCTTATCGAAGCCTCTCGATACCCGGACGTCAAGTCACTGCAGATCCAGCTCACCGGATTTCTC GACAAAGACACCGCCATGTTCTGCAAAGAGCTTTGGAACCTACTGCTCAGCGGCCAGAGCAGCCCTCAGGGCGTG CCCAAGGAGCTACTGGAGGCAAAAAAACTAGAGCTCATACAAGAAAAGATGGACGCCGATCGGGCCGCAAACGCC CGTCAGAGCCGCGACGCGCAGGGATCCGACGAGCGAGAGCGTCGCGACTCGAAGCCGCTTGCGGACTCTTGGCAC GCGCAGGGCCGCCCTGGTGATCGTGCTTTCGGCAACCGCAGTCGGGGTGGCCATGTCCGAGGGGGGCAACGATCG CCGTCGCCGGGACCCAGAGCTCGTGAGGTCGCCGCGAGCCAGCTCCGAGACGCTATCGCGACCGATCGCCGTCTG CCGAGGAGTCGTCGCGCTCTCGCTCTCGCAGCCGCAGCATGTCTCGCGGCAGTCGACGCTGTCACACTCCCCCGA GACGCAGACTGTCCCCTGCGCGATACGAGCGTTTCCGAAAGAGGAGCAGGTCTCCCCGCCCTGGTTCTCGTTCTG CTCGTCGCGGTATTGACAGCCGCGGCCGCCGCTTGGCTCGTGGCCGTTCCCGCTCAAGCTCGTCTGAGAGGTCGC CAGCTGTCAAGCGCAGACGTCGGTCCTGGTCGCGAAGCGCGTCGGCAGGCCGTTACCGCAGGCACTATTCGTCGT CGCCCCACTCCCGCAGTCGGAGGGATTATCGCAGCCGCCACAGGAGCCACGATTCAGAGCGCAACTACCATCGCC GTGAGTCACCTGTGGATAGACGCCGAGACAGACGCAGCTTCTCGCCGGACAACGACCATGAGAACGGACGTCGCC GAGGACGAGGCAAAGGTCGACGTGGCAGGGGCCGCCGGTCTCGCAAGGGTGGACAAGACAATTCCCACCGGAGGC ATGACCCTCGTGCCGCCTCTCCTAAGCCGACCGCTTCGAACGATCAAACAGAGAAAGAGACTCAGTCGTCTCTCC GGGAAGAAAGCTTGCTTAAGGAGAAACTTCTACGGGAGAAGATTCTCAAGATGA |
| Gene | >Ophio5|1528 ATGGATGCCCGACTTCTAAAGTCGACCAAGTTCCCGCCTGAGTTCAACCAAAAGGTCGACATGGAGAAGGTCAAC CTCCATGTCATGAAAAAGTTGATTCCTACCCCTTCTCTTTAGCTTTCTTTGTACTCATACGTGGTTCTCCAGATG GATCACCAAGAGAATCTCGGAGATTCTCGGAAACGATGACGATGTCGTGATTGAGCTGTGCTTCAACCTTATCGA AGCCTCTCGATACGTTAGTCTCCCCTTCTTGATCAGCGACACTCGGCCATGGCTAACTACCTTGCAGCCGGACGT CAAGTCACTGCAGATCCAGCTCACCGGATTTCTCGACAAAGACACCGCCATGTTCTGCAAAGAGCTTTGGAACCT ACTGCTCAGCGGCCAGAGCAGCCCTCAGGGCGTGCCCAAGGAGCTACTGGAGGCAAAAAAACTAGAGCTCATACA AGAAAAGGTATATTGATTCTCCGTGTCACCAAATCTACTCGTACTGACACGCTCACTCCTCCAGATGGACGCCGA TCGGGCCGCAAACGCCCGTCAGAGCCGCGACGCGCAGGGATCCGACGAGCGAGAGCGTCGCGACTCGAAGCCGCT TGCGGACTCTTGGCACGCGCAGGGCCGCCCTGGTGATCGTGCTTTCGGCAACCGCAGTCGGGGTGGCCATGTCCG AGGGGGGCAACGATCGCCGTCGCCGGGACCCAGAGCTCGTGGTCCGCGTGACTCTTACGGCTGTGATAGCTACGT TCCCTCCCCAAGAGGTCGCCGCGAGCCAGCTCCGAGACGCTATCGCGACCGATCGCCGTCTGCCGAGGAGTCGTC GCGCTCTCGCTCTCGCAGCCGCAGCATGTCTCGCGGCAGTCGACGCTGTCACACTCCCCCGAGACGCAGACTGTC CCCTGCGCGATACGAGCGTTTCCGAAAGAGGAGCAGGTCTCCCCGCCCTGGTTCTCGTTCTGCTCGTCGCGGTAT TGACAGCCGCGGCCGCCGCTTGGCTCGTGGCCGTTCCCGCTCAAGCTCGTCTGAGAGGTCGCCAGCTGTCAAGCG CAGACGTCGGTCCTGGTCGCGAAGCGCGTCGGCAGGCCGTTACCGCAGGCACTATTCGTCGTCGCCCCACTCCCG CAGTCGGAGGGATTATCGCAGCCGCCACAGGAGCCACGATTCAGAGCGCAACTACCATCGCCGTGAGTCACCTGT GGATAGACGCCGAGACAGACGCAGCTTCTCGCCGGACAACGACCATGAGAACGGACGTCGCCGAGGACGAGGCAA AGGTCGACGTGGCAGGGGCCGCCGGTCTCGCAAGGGTGGACAAGACAATTCCCACCGGAGGCGTAACAGCTCTTC CGAATCTTCATTTTCACCTACTCGTGGCAAATCAGCTGATGTTTTGGAAGATGACCCTCGTGCCGCCTCTCCTAA GCCGACCGCTTCGAACGATCAAACAGAGAAAGAGGTGTGTGACTAGTGAGCCACGGAGGCAAAAGCGGTAGCTCT GAGTGCAGCTGTGCTCAATACTAACCCACTGGAGACGAGTAGACTCAGTCGTCTCTCCGGGAAGAAAGCTTGCTT AAGGAGAAACTTCTACGGGAGAAGATTCTCAAGATGA |